mRNA_D-dudresnayi_contig10588.666.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10588.666.1
Unique NamemRNA_D-dudresnayi_contig10588.666.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10588.666.1 vs. uniprot
Match: A0A7S3MBT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBT6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.940e-32
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 3 
Query:   36 MSHNYXXXXXXXXXXXXAVAAIAESSTWHLHDIEKLKEQTSELLDASWKDIRNKHLLNKMLDLEQPTITGKMVDFLLQEGVCESLL 293
            MS NY            AVAAIA S+TWHLHDIEKLKEQTSELLD +WKD RNKHLLNKML+LEQPTIT KM+DFLLQEGVC+SL+
Sbjct:    1 MSANYNIDSDSDEDDVEAVAAIANSTTWHLHDIEKLKEQTSELLDPTWKDTRNKHLLNKMLELEQPTITVKMIDFLLQEGVCDSLM 86
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BLAST of mRNA_D-dudresnayi_contig10588.666.1 vs. uniprot
Match: A0A482RQJ3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQJ3_9ARCH)

HSP 1 Score: 90.5 bits (223), Expect = 5.970e-21
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:  114 TWHLHDIEKLKEQTSELLDASWKDIRNKHLLNKMLDLEQPTITGKMVDFLLQEGVCESLL 293
            ++ L DIE+LKEQT ELLD +WK+ RN+HLL+KML+LEQPTIT KMVDFLLQ+ VCE L+
Sbjct:   29 SYQLQDIERLKEQTKELLDPAWKETRNRHLLHKMLELEQPTITAKMVDFLLQDKVCELLV 88
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BLAST of mRNA_D-dudresnayi_contig10588.666.1 vs. uniprot
Match: A0A835Z422_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z422_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.160e-8
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 3 
Query:  162 LLDASWKDIRNKHLLNKMLDLEQPTITGKMVDFLLQEGVCE 284
            + D++WK + + +LL++MLDLEQP IT KM++FLLQ+GVCE
Sbjct:   42 ITDSAWKRLHSHYLLSRMLDLEQPIITDKMIEFLLQDGVCE 82
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10588.666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3MBT6_9STRA3.940e-3273.26Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482RQJ3_9ARCH5.970e-2170.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835Z422_9STRA5.160e-858.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10588contigD-dudresnayi_contig10588:892..1342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size295
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10588.666.1prot_D-dudresnayi_contig10588.666.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10588 927..1342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.751672-UTR-D-dudresnayi_contig10588:891..9261622927563.751672-UTR-D-dudresnayi_contig10588:891..926Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10588 892..926 +
1690556808.708209-UTR-D-dudresnayi_contig10588:891..9261690556808.708209-UTR-D-dudresnayi_contig10588:891..926Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10588 892..926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.770241-CDS-D-dudresnayi_contig10588:926..10311622927563.770241-CDS-D-dudresnayi_contig10588:926..1031Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10588 927..1031 +
1690556808.7254472-CDS-D-dudresnayi_contig10588:926..10311690556808.7254472-CDS-D-dudresnayi_contig10588:926..1031Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10588 927..1031 +
1622927563.78208-CDS-D-dudresnayi_contig10588:1108..12161622927563.78208-CDS-D-dudresnayi_contig10588:1108..1216Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10588 1109..1216 +
1690556808.733732-CDS-D-dudresnayi_contig10588:1108..12161690556808.733732-CDS-D-dudresnayi_contig10588:1108..1216Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10588 1109..1216 +
1622927563.7926884-CDS-D-dudresnayi_contig10588:1297..13421622927563.7926884-CDS-D-dudresnayi_contig10588:1297..1342Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10588 1298..1342 +
1690556808.741566-CDS-D-dudresnayi_contig10588:1297..13421690556808.741566-CDS-D-dudresnayi_contig10588:1297..1342Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10588 1298..1342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10588.666.1

>prot_D-dudresnayi_contig10588.666.1 ID=prot_D-dudresnayi_contig10588.666.1|Name=mRNA_D-dudresnayi_contig10588.666.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=86bp
MSHNYNLDSDSDDEEVEAVAAIAESSTWHLHDIEKLKEQTSELLDASWKD
IRNKHLLNKMLDLEQPTITGKMVDFLLQEGVCESLL
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mRNA from alignment at D-dudresnayi_contig10588:892..1342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10588.666.1 ID=mRNA_D-dudresnayi_contig10588.666.1|Name=mRNA_D-dudresnayi_contig10588.666.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=451bp|location=Sequence derived from alignment at D-dudresnayi_contig10588:892..1342+ (Desmarestia dudresnayi DdudBR16 monoicous)
AATAATTGTATATCCAGCTCGAAAGTGATATTACAATGTCTCACAATTAC
AATTTAGATTCTGATTCAGATGATGAGGAAGTTGAAGCAGTGGCAGCTAT
TGCTGAAAGCTCAACATGGCATCTTCATGATATTGAAAAGGTTTGCTTCA
TTTTTGTATTGATTAATTATTACAGTTCAAACATTTAACAACATAATATT
ACCGTTATTTTTTATAGTTAAAAGAACAAACTTCAGAACTTTTAGATGCA
TCATGGAAAGATATTAGAAATAAACATCTTCTAAATAAAATGTTAGACTT
GGAGCAACCTACCATCACTGGAAAGGTTAGTATATATTAACTTGAATATA
AAGATATACAGTACACGTGTCTTACAGTAACATCATTGTTTATTTTATTA
TTATAGATGGTAGACTTTTTACTTCAAGAAGGTGTCTGTGAATCATTACT
G
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10588:892..1342+

>mRNA_D-dudresnayi_contig10588.666.1 ID=mRNA_D-dudresnayi_contig10588.666.1|Name=mRNA_D-dudresnayi_contig10588.666.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at D-dudresnayi_contig10588:892..1342+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTCACAATTACAATTTAGATTCTGATTCAGATGATGAGGAAGTTGA
AGCAGTGGCAGCTATTGCTGAAAGCTCAACATGGCATCTTCATGATATTG
AAAAGATGTCTCACAATTACAATTTAGATTCTGATTCAGATGATGAGGAA
GTTGAAGCAGTGGCAGCTATTGCTGAAAGCTCAACATGGCATCTTCATGA
TATTGAAAAGTTAAAAGAACAAACTTCAGAACTTTTAGATGCATCATGGA
AAGATATTAGAAATAAACATCTTCTAAATAAAATGTTAGACTTGGAGCAA
CCTACCATCACTGGAAAGTTAAAAGAACAAACTTCAGAACTTTTAGATGC
ATCATGGAAAGATATTAGAAATAAACATCTTCTAAATAAAATGTTAGACT
TGGAGCAACCTACCATCACTGGAAAGATGGTAGACTTTTTACTTCAAGAA
GGTGTCTGTGAATCATTACTGATGGTAGACTTTTTACTTCAAGAAGGTGT
CTGTGAATCATTACTG
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