mRNA_D-dudresnayi_contig10580.661.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10580.661.1
Unique NamemRNA_D-dudresnayi_contig10580.661.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10580.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10580contigD-dudresnayi_contig10580:69..663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.6412804-CDS-D-dudresnayi_contig10580:68..4101622927562.6412804-CDS-D-dudresnayi_contig10580:68..410Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10580 69..410 +
1690556808.5040686-CDS-D-dudresnayi_contig10580:68..4101690556808.5040686-CDS-D-dudresnayi_contig10580:68..410Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10580 69..410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.6541579-UTR-D-dudresnayi_contig10580:410..6631622927562.6541579-UTR-D-dudresnayi_contig10580:410..663Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10580 411..663 +
1690556808.5156212-UTR-D-dudresnayi_contig10580:410..6631690556808.5156212-UTR-D-dudresnayi_contig10580:410..663Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10580 411..663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10580.661.1prot_D-dudresnayi_contig10580.661.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10580 69..410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10580.661.1

>prot_D-dudresnayi_contig10580.661.1 ID=prot_D-dudresnayi_contig10580.661.1|Name=mRNA_D-dudresnayi_contig10580.661.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=114bp
PPPPPPSPSVFSTARYVPCDSVVLLIRVKTANDQKKVRGTKGTLYLVGNG
GGYNNLCAPQQVFGDRRIFMDRAAIFEHMERRGTSATCYWYGTVLSGRYT
VASAGTTFFCFVQ*
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mRNA from alignment at D-dudresnayi_contig10580:69..663+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10580.661.1 ID=mRNA_D-dudresnayi_contig10580.661.1|Name=mRNA_D-dudresnayi_contig10580.661.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=595bp|location=Sequence derived from alignment at D-dudresnayi_contig10580:69..663+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCCCCCCCCCCCCCCCCTTCCCCCTCGGTGTTCTCCACGGCCAGATATGT
ACCTTGTGACTCGGTCGTACTATTAATAAGAGTCAAAACAGCTAACGACC
AAAAAAAGGTGCGCGGAACGAAGGGCACGCTGTATCTTGTAGGTAACGGT
GGTGGATATAATAATCTTTGTGCACCTCAGCAGGTTTTTGGCGATAGGAG
AATTTTCATGGACCGGGCCGCAATATTCGAGCATATGGAAAGGCGGGGCA
CGTCTGCCACATGTTATTGGTATGGTACGGTACTGTCCGGTCGTTATACC
GTAGCGTCCGCAGGAACAACATTTTTTTGTTTTGTTCAGTAGTCCTTGGG
GGGGTAGCGGGCGGACGAAGTGCGGCGGTCGCCACCGGAGAGCGTTTACG
GCCGAGGACCCTCAGAGGGACGACGTCCCGATTCGGATCGTGGTACCGTA
TGGTAACGGTAGATGTAACGCGCCTGTGATACGACACCTGCAGGTAAGAT
TTGGGTGCGCGCAGGGAGAAGGAGGGCGGGGGCGTACTCATTTGTTGCTT
GCCTCAGTTATTTGGCCATTGACCACGCATCCCATTCGAGACGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10580:69..663+

>mRNA_D-dudresnayi_contig10580.661.1 ID=mRNA_D-dudresnayi_contig10580.661.1|Name=mRNA_D-dudresnayi_contig10580.661.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at D-dudresnayi_contig10580:69..663+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCCCCCCCCCCCCCCCCTTCCCCCTCGGTGTTCTCCACGGCCAGATATGT
ACCTTGTGACTCGGTCGTACTATTAATAAGAGTCAAAACAGCTAACGACC
AAAAAAAGGTGCGCGGAACGAAGGGCACGCTGTATCTTGTAGGTAACGGT
GGTGGATATAATAATCTTTGTGCACCTCAGCAGGTTTTTGGCGATAGGAG
AATTTTCATGGACCGGGCCGCAATATTCGAGCATATGGAAAGGCGGGGCA
CGTCTGCCACATGTTATTGGTATGGTACGGTACTGTCCGGTCGTTATACC
GTAGCGTCCGCAGGAACAACATTTTTTTGTTTTGTTCAGTAGCCCCCCCC
CCCCCCCCCTTCCCCCTCGGTGTTCTCCACGGCCAGATATGTACCTTGTG
ACTCGGTCGTACTATTAATAAGAGTCAAAACAGCTAACGACCAAAAAAAG
GTGCGCGGAACGAAGGGCACGCTGTATCTTGTAGGTAACGGTGGTGGATA
TAATAATCTTTGTGCACCTCAGCAGGTTTTTGGCGATAGGAGAATTTTCA
TGGACCGGGCCGCAATATTCGAGCATATGGAAAGGCGGGGCACGTCTGCC
ACATGTTATTGGTATGGTACGGTACTGTCCGGTCGTTATACCGTAGCGTC
CGCAGGAACAACATTTTTTTGTTTTGTTCAGTAG
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