mRNA_D-dudresnayi_contig10561.622.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10561.622.1
Unique NamemRNA_D-dudresnayi_contig10561.622.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: D7FK77_ECTSI (Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK77_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.410e-22
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFYQ 198
            SEDMFKSAMS MN+D+KKMPLGQLS AQVQRGY VLEEL+ ALK  G N+A LLETLSA+FYQ
Sbjct:  602 SEDMFKSAMSKMNIDVKKMPLGQLSSAQVQRGYDVLEELEDALKTTGRNKAALLETLSAKFYQ 664
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: A0A7L3IS65_9PASS (Poly [ADP-ribose] polymerase (Fragment) n=5 Tax=Passeriformes TaxID=9126 RepID=A0A7L3IS65_9PASS)

HSP 1 Score: 74.3 bits (181), Expect = 5.850e-14
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMF+ AM TMN+D+KKMPLG+LS  Q+ RG+  LEEL+ ALK + +  AHL E LS+RFY
Sbjct:  199 SRDMFRDAMQTMNIDVKKMPLGKLSKQQIARGFEALEELEAALKEQPSQAAHL-EELSSRFY 259
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: UPI000E1D7494 (poly [ADP-ribose] polymerase 3 isoform X3 n=2 Tax=Apteryx rowi TaxID=308060 RepID=UPI000E1D7494)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMF+ AM TMN+D+KKMPLG+LS  Q+ +G+  LEEL+ AL+A+ A   HL E LS+RFY
Sbjct:  139 SNDMFRDAMQTMNIDVKKMPLGKLSKQQIAKGFEALEELEAALRAQPARATHL-EELSSRFY 199
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: A0A7L1N5M3_RHICY (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1N5M3_RHICY)

HSP 1 Score: 72.4 bits (176), Expect = 2.790e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMFK AM TMN+D+KKMPLG+LS  Q+ RG+  LEEL+ AL+ +    AHL E LS+RFY
Sbjct:  199 SSDMFKDAMQTMNIDVKKMPLGKLSKQQIARGFETLEELEAALQEQHPATAHL-EELSSRFY 259
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: A0A7K9BB75_DRONO (Poly [ADP-ribose] polymerase (Fragment) n=7 Tax=Palaeognathae TaxID=8783 RepID=A0A7K9BB75_DRONO)

HSP 1 Score: 72.0 bits (175), Expect = 3.810e-13
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMF+ AM TMN+D+KKMPLG+L+  Q+ +G+  LEEL+ AL+ + A  AHL E LS+RFY
Sbjct:  199 SNDMFRDAMQTMNIDVKKMPLGKLTKQQIAKGFEALEELEAALREQPARAAHL-EQLSSRFY 259
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: A0A7L0E5A6_TROML (Poly [ADP-ribose] polymerase (Fragment) n=3 Tax=Trogonidae TaxID=56309 RepID=A0A7L0E5A6_TROML)

HSP 1 Score: 71.6 bits (174), Expect = 5.200e-13
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMF+ AM TMN+D+KKMPLG LS  Q+ RG+  LEEL+ AL+ +    AHL E LS+RFY
Sbjct:  197 SSDMFRDAMQTMNIDVKKMPLGNLSKQQIARGFEALEELEAALQEQPPKAAHL-EDLSSRFY 257
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: A0A8C4XIK3_FALTI (Poly [ADP-ribose] polymerase n=11 Tax=Falco TaxID=8952 RepID=A0A8C4XIK3_FALTI)

HSP 1 Score: 71.2 bits (173), Expect = 7.110e-13
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMF+ AM TMN+++KKMPLG+LS  Q+ RG+ VLEEL+ AL+ +  ++A LLE LS+RFY
Sbjct:  199 SSDMFQDAMQTMNINVKKMPLGKLSKQQIARGFEVLEELEAALREQ-PSQAALLEDLSSRFY 259
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: A0A7K6U6X4_9AVES (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Aegotheles bennettii TaxID=48278 RepID=A0A7K6U6X4_9AVES)

HSP 1 Score: 71.2 bits (173), Expect = 7.110e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMF+ AM TMN+D+KKMPLG+LS  Q+ +G+  LEEL+ AL+ +    AHL E LS+RFY
Sbjct:  197 SSDMFRDAMQTMNIDVKKMPLGKLSKQQIAKGFEALEELEAALQEQPPQAAHL-EALSSRFY 257
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BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: UPI000FCD2BB5 (poly [ADP-ribose] polymerase 3 isoform X1 n=3 Tax=Neopelma chrysocephalum TaxID=114329 RepID=UPI000FCD2BB5)

HSP 1 Score: 70.9 bits (172), Expect = 9.770e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMF+ AM TMN+D+KKMPLG+LS  Q+ RG+  LEEL+ AL+ +    +HL E LS+RFY
Sbjct:  278 SSDMFRDAMQTMNIDVKKMPLGKLSKQQIARGFEALEELEAALQEQPPQASHL-EELSSRFY 338
[Close]
BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Match: A0A7L2IWV4_9PICI (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Semnornis frantzii TaxID=91796 RepID=A0A7L2IWV4_9PICI)

HSP 1 Score: 70.5 bits (171), Expect = 1.120e-12
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   10 SEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARGANRAHLLETLSARFY 195
            S DMF+ AM TMN+D+KK+PLG+LS  Q+ RG+  LEEL+ AL+ +    AHL E LS+RFY
Sbjct:   34 SNDMFQDAMQTMNIDVKKLPLGKLSKQQIARGFEALEELEAALQEQPPKAAHL-EDLSSRFY 94
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10561.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK77_ECTSI2.410e-2279.37Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus Ta... [more]
A0A7L3IS65_9PASS5.850e-1459.68Poly [ADP-ribose] polymerase (Fragment) n=5 Tax=Pa... [more]
UPI000E1D74941.070e-1358.06poly [ADP-ribose] polymerase 3 isoform X3 n=2 Tax=... [more]
A0A7L1N5M3_RHICY2.790e-1359.68Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Rh... [more]
A0A7K9BB75_DRONO3.810e-1356.45Poly [ADP-ribose] polymerase (Fragment) n=7 Tax=Pa... [more]
A0A7L0E5A6_TROML5.200e-1358.06Poly [ADP-ribose] polymerase (Fragment) n=3 Tax=Tr... [more]
A0A8C4XIK3_FALTI7.110e-1358.06Poly [ADP-ribose] polymerase n=11 Tax=Falco TaxID=... [more]
A0A7K6U6X4_9AVES7.110e-1356.45Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Ae... [more]
UPI000FCD2BB59.770e-1356.45poly [ADP-ribose] polymerase 3 isoform X1 n=3 Tax=... [more]
A0A7L2IWV4_9PICI1.120e-1256.45Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10561contigD-dudresnayi_contig10561:491..1633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D7FK77
Preferred namePARP3
KEGG koko:K10798
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
GOsGO:0000723,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0003950,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0015630,GO:0016043,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016886,GO:0019219,GO:0019222,GO:0019538,GO:0022616,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0032200,GO:0032886,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0035861,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051103,GO:0051105,GO:0051106,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051338,GO:0051348,GO:0051493,GO:0051641,GO:0051716,GO:0051726,GO:0051972,GO:0051974,GO:0060236,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090224,GO:0090304,GO:0090734,GO:0140097,GO:1901360,GO:1901564,GO:1901576,GO:1905661,GO:1905662,GO:1990166,GO:2000112,GO:2000113,GO:2000278,GO:2000279
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGsKOG1037@1,KOG1037@2759
EC2.4.2.30
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927559.6909351-CDS-D-dudresnayi_contig10561:490..5831622927559.6909351-CDS-D-dudresnayi_contig10561:490..583Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10561 491..583 +
1690556807.2288485-CDS-D-dudresnayi_contig10561:490..5831690556807.2288485-CDS-D-dudresnayi_contig10561:490..583Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10561 491..583 +
1622927559.7096274-CDS-D-dudresnayi_contig10561:1525..16331622927559.7096274-CDS-D-dudresnayi_contig10561:1525..1633Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10561 1526..1633 +
1690556807.2383468-CDS-D-dudresnayi_contig10561:1525..16331690556807.2383468-CDS-D-dudresnayi_contig10561:1525..1633Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10561 1526..1633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10561.622.1prot_D-dudresnayi_contig10561.622.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10561 491..1633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10561.622.1

>prot_D-dudresnayi_contig10561.622.1 ID=prot_D-dudresnayi_contig10561.622.1|Name=mRNA_D-dudresnayi_contig10561.622.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=67bp
MNLSEDMFKSAMSTMNVDIKKMPLGQLSMAQVQRGYSVLEELDLALKARG
ANRAHLLETLSARFYQA
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mRNA from alignment at D-dudresnayi_contig10561:491..1633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10561.622.1 ID=mRNA_D-dudresnayi_contig10561.622.1|Name=mRNA_D-dudresnayi_contig10561.622.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1143bp|location=Sequence derived from alignment at D-dudresnayi_contig10561:491..1633+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAATCTCAGCGAGGACATGTTCAAGTCGGCCATGTCCACCATGAACGT
GGACATCAAGAAGATGCCTCTCGGGCAGCTGAGCATGGCACAGGTGAGGA
GGCCGCAAGCCGCAGCAGTGCCAGCCGCTGCCGAAAATATGCTCGGTATC
GTTGAGAAACGTTTCTTTTTGTTTGAATCCCATTTGTTATCTTCGCCGCA
TTCTTTCTCTATGGATTCTTTCTCTATGGATGGCTCCATCTCTCTTTTTC
GTAACTCAGATCCGGGGTCACATAGCAGACTCTCCTTCCCCCTCCCCACT
ACGGTAAGAGCGAGCCTATATTGTTGTTATCGTGAGAAGGGTGCGGCACT
TTCTTCCCTCGTTGGCTGTGATGGAATTGTACTTCATTAGTTGTTTATTT
TGTACAGGGCTGCTATGGCAAAAGGCTGGGGCCACCGCAAGCATGCACGA
TATGGGTTGACAAGCGGCGTACCAGCATCTATTTTGTATTATGTCGCTAA
AATATTGCAAGGGATAGGTTGCGGTTCGTTATGTTTTTTTTTTTTTTTTC
CCGTGTTTATTCTATGGCACCCGTTTTTTATCACTGTAAAGTCGGTGCAA
CATGCGAGGCAGAGCATTGTTGTGCCTTCCCCACCTTGTGTAAAGGGAAG
CGATGAAGCGATAGGGCAGCGCGAGTCCTCCCCCCATCCCCACGCCATCC
TAGGAGATAGATGGTGATGGTGATGATGGTGACGATAAAAAGGCGAACGG
GAATGGGATAAGACAAGCAAAGAGTTTTTATGTAAAATACGGCAAACACG
TAAAGATCGCCCAAATGTTGGAGGTGTCTCTATTGGGAGCAGGAACGGTT
CTCCACCTCGAAAGGGATGCGTGGTCAATGGTGAAATGACTAAGGCAAGC
AACAAATGAGCACGCCCCCACCCAAGGCGAGCAACATATCGGGCGGGGAC
AAATGACTAAGGCAAGCAACGAAAACCAGCCAACATACGCCTTGTGATTG
CTTACGCGTGTGTGCGTTTGCGTGCTTTATTTCAGGTGCAGCGCGGCTAC
TCGGTCCTGGAGGAGCTGGATTTGGCGCTCAAGGCGAGGGGGGCGAACCG
GGCCCACCTGCTCGAGACTCTATCCGCTAGGTTCTACCAGGCT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10561:491..1633+

>mRNA_D-dudresnayi_contig10561.622.1 ID=mRNA_D-dudresnayi_contig10561.622.1|Name=mRNA_D-dudresnayi_contig10561.622.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at D-dudresnayi_contig10561:491..1633+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAATCTCAGCGAGGACATGTTCAAGTCGGCCATGTCCACCATGAACGT
GGACATCAAGAAGATGCCTCTCGGGCAGCTGAGCATGGCACAGATGAATC
TCAGCGAGGACATGTTCAAGTCGGCCATGTCCACCATGAACGTGGACATC
AAGAAGATGCCTCTCGGGCAGCTGAGCATGGCACAGGTGCAGCGCGGCTA
CTCGGTCCTGGAGGAGCTGGATTTGGCGCTCAAGGCGAGGGGGGCGAACC
GGGCCCACCTGCTCGAGACTCTATCCGCTAGGTTCTACCAGGCTGTGCAG
CGCGGCTACTCGGTCCTGGAGGAGCTGGATTTGGCGCTCAAGGCGAGGGG
GGCGAACCGGGCCCACCTGCTCGAGACTCTATCCGCTAGGTTCTACCAGG
CT
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