mRNA_D-dudresnayi_contig10546.600.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10546.600.1
Unique NamemRNA_D-dudresnayi_contig10546.600.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10546.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10546contigD-dudresnayi_contig10546:5788..6183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size397
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.8413656-UTR-D-dudresnayi_contig10546:5787..58111622927557.8413656-UTR-D-dudresnayi_contig10546:5787..5811Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10546 5788..5811 +
1690556806.4654229-UTR-D-dudresnayi_contig10546:5787..58111690556806.4654229-UTR-D-dudresnayi_contig10546:5787..5811Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10546 5788..5811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.8540533-CDS-D-dudresnayi_contig10546:5811..61831622927557.8540533-CDS-D-dudresnayi_contig10546:5811..6183Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10546 5812..6183 +
1690556806.4741025-CDS-D-dudresnayi_contig10546:5811..61831690556806.4741025-CDS-D-dudresnayi_contig10546:5811..6183Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10546 5812..6183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10546.600.1prot_D-dudresnayi_contig10546.600.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10546 5812..6183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10546.600.1

>prot_D-dudresnayi_contig10546.600.1 ID=prot_D-dudresnayi_contig10546.600.1|Name=mRNA_D-dudresnayi_contig10546.600.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=124bp
MQLMTRCLDANGAFLAFATQLEERYQSAQNDDRRHVRDSEDRDVKHQEHM
NRLDVQNEQDSRKLAVETKRLAEELRAREDAMKRRERSKNDGRLARLWSE
DRDFLRLLSLVNVAIAASTVAWRR
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mRNA from alignment at D-dudresnayi_contig10546:5788..6183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10546.600.1 ID=mRNA_D-dudresnayi_contig10546.600.1|Name=mRNA_D-dudresnayi_contig10546.600.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at D-dudresnayi_contig10546:5788..6183+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGTAGAGGGGTTGACGAGCGTCGTATGCAGCTGATGACGAGGTGCCTCGA
CGCTAACGGGGCGTTTCTGGCGTTCGCTACGCAGCTGGAGGAGAGGTACC
AGAGTGCCCAGAACGATGATCGCAGGCATGTGAGAGACAGCGAGGACAGA
GATGTGAAGCACCAGGAACACATGAACCGACTCGACGTTCAGAACGAGCA
GGACAGTCGAAAGCTGGCCGTGGAGACGAAGCGCCTGGCCGAGGAGCTGA
GGGCTCGGGAAGACGCGATGAAGAGACGCGAGAGAAGCAAAAACGACGGG
CGACTCGCGAGGCTCTGGTCGGAGGACCGCGACTTCTTGCGTCTCCTGTC
CCTGGTGAACGTTGCCATCGCGGCGAGCACGGTGGCCTGGCGCAGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10546:5788..6183+

>mRNA_D-dudresnayi_contig10546.600.1 ID=mRNA_D-dudresnayi_contig10546.600.1|Name=mRNA_D-dudresnayi_contig10546.600.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at D-dudresnayi_contig10546:5788..6183+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCAGCTGATGACGAGGTGCCTCGACGCTAACGGGGCGTTTCTGGCGTT
CGCTACGCAGCTGGAGGAGAGGTACCAGAGTGCCCAGAACGATGATCGCA
GGCATGTGAGAGACAGCGAGGACAGAGATGTGAAGCACCAGGAACACATG
AACCGACTCGACGTTCAGAACGAGCAGGACAGTCGAAAGCTGGCCGTGGA
GACGAAGCGCCTGGCCGAGGAGCTGAGGGCTCGGGAAGACGCGATGAAGA
GACGCGAGAGAAGCAAAAACGACGGGCGACTCGCGAGGCTCTGGTCGGAG
GACCGCGACTTCTTGCGTCTCCTGTCCCTGGTGAACGTTGCCATCGCGGC
GAGCACGGTGGCCTGGCGCAGAATGCAGCTGATGACGAGGTGCCTCGACG
CTAACGGGGCGTTTCTGGCGTTCGCTACGCAGCTGGAGGAGAGGTACCAG
AGTGCCCAGAACGATGATCGCAGGCATGTGAGAGACAGCGAGGACAGAGA
TGTGAAGCACCAGGAACACATGAACCGACTCGACGTTCAGAACGAGCAGG
ACAGTCGAAAGCTGGCCGTGGAGACGAAGCGCCTGGCCGAGGAGCTGAGG
GCTCGGGAAGACGCGATGAAGAGACGCGAGAGAAGCAAAAACGACGGGCG
ACTCGCGAGGCTCTGGTCGGAGGACCGCGACTTCTTGCGTCTCCTGTCCC
TGGTGAACGTTGCCATCGCGGCGAGCACGGTGGCCTGGCGCAGA
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