mRNA_D-dudresnayi_contig10540.592.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10540.592.1
Unique NamemRNA_D-dudresnayi_contig10540.592.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10540.592.1 vs. uniprot
Match: A0A7S3GTM8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTM8_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.600e-41
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    4 WTTAEVANWLVTIGYNDLIPIFHRANINGLALTRLNDNLLREIGVLNVGTRLQFMNEVIKIQAVSRSSWRNTILWKGEEYRPN 252
            W   EVANWLV+IGYNDL+P+FHRANINGLAL+RLNDNLLREIGV NVGTRLQFMNEV+KIQA++RS WRN +LW   EYRP+
Sbjct:   51 WQVDEVANWLVSIGYNDLVPVFHRANINGLALSRLNDNLLREIGVANVGTRLQFMNEVLKIQAIARSDWRNRMLWTETEYRPS 133
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BLAST of mRNA_D-dudresnayi_contig10540.592.1 vs. uniprot
Match: A0A7S3H5D8_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5D8_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.600e-39
Identity = 61/82 (74.39%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    4 WTTAEVANWLVTIGYNDLIPIFHRANINGLALTRLNDNLLREIGVLNVGTRLQFMNEVIKIQAVSRSSWRNTILWKGEEYRP 249
            W  +EV+ WLVTIGYNDL+P+FH++NING ALTRL+D LL+EIGVLNVGTRLQF+NEVI+IQA+SR+ WRN I+W GEEYRP
Sbjct:   36 WDASEVSKWLVTIGYNDLVPLFHQSNINGAALTRLDDRLLKEIGVLNVGTRLQFLNEVIRIQAISRAEWRNHIVWTGEEYRP 117
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BLAST of mRNA_D-dudresnayi_contig10540.592.1 vs. uniprot
Match: A0A066V8X7_TILAU (Uncharacterized protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066V8X7_TILAU)

HSP 1 Score: 50.4 bits (119), Expect = 3.080e-5
Identity = 22/62 (35.48%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:    4 WTTAEVANWLVTIGYNDLIPIFHRANINGLALTRLNDNLLREIGVLNVGTRLQFMNEVIKIQ 189
            W   +V  WLV++        F    ING  L  L+DN L+++G+L+VG RL  +N + K++
Sbjct:  197 WELEDVRAWLVSVNCGQYADKFEENGINGEVLHLLDDNALKDMGILSVGQRLHILNGIFKLK 258
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BLAST of mRNA_D-dudresnayi_contig10540.592.1 vs. uniprot
Match: A0A1E4TBL8_9ASCO (Uncharacterized protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TBL8_9ASCO)

HSP 1 Score: 50.1 bits (118), Expect = 3.940e-5
Identity = 23/63 (36.51%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    4 WTTAEVANWLVTIGYNDLIPIFHRANINGLALTRLNDNLLREIGVLNVGTRLQFMNEVIKIQA 192
            W+  +V+ +L ++G +  +P+F   ++ G  L RLN +LLREIGV+ VG RL  +  +  ++A
Sbjct:   12 WSLDDVSVYLSSLGLDQYLPLFKEHDVTGDVLIRLNHSLLREIGVVVVGDRLDILLGIYALKA 74
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10540.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3GTM8_9STRA3.600e-4178.31Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3H5D8_9STRA1.600e-3974.39Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A066V8X7_TILAU3.080e-535.48Uncharacterized protein n=1 Tax=Tilletiaria anomal... [more]
A0A1E4TBL8_9ASCO3.940e-536.51Uncharacterized protein n=1 Tax=Tortispora caseino... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10540contigD-dudresnayi_contig10540:10009..10260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog227086.JGI_V11_85618
EggNOG free text desc.Sterile alpha motif.
EggNOG OGs2BF0W@1,2S15W@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.418835-CDS-D-dudresnayi_contig10540:10008..102601622927557.418835-CDS-D-dudresnayi_contig10540:10008..10260Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10540 10009..10260 -
1690556806.302426-CDS-D-dudresnayi_contig10540:10008..102601690556806.302426-CDS-D-dudresnayi_contig10540:10008..10260Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10540 10009..10260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10540.592.1prot_D-dudresnayi_contig10540.592.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10540 10009..10260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10540.592.1

>prot_D-dudresnayi_contig10540.592.1 ID=prot_D-dudresnayi_contig10540.592.1|Name=mRNA_D-dudresnayi_contig10540.592.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=84bp
HWTTAEVANWLVTIGYNDLIPIFHRANINGLALTRLNDNLLREIGVLNVG
TRLQFMNEVIKIQAVSRSSWRNTILWKGEEYRPN
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mRNA from alignment at D-dudresnayi_contig10540:10009..10260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10540.592.1 ID=mRNA_D-dudresnayi_contig10540.592.1|Name=mRNA_D-dudresnayi_contig10540.592.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at D-dudresnayi_contig10540:10009..10260- (Desmarestia dudresnayi DdudBR16 monoicous)
CATTGGACAACAGCAGAAGTTGCTAACTGGCTTGTAACCATAGGTTATAA
TGATTTGATTCCTATTTTTCATCGTGCTAATATAAACGGTTTAGCTTTAA
CAAGACTAAATGATAATTTATTAAGAGAAATAGGAGTGTTAAATGTTGGT
ACACGTCTTCAATTTATGAATGAAGTTATTAAAATACAAGCAGTATCACG
TTCAAGTTGGAGAAATACAATTTTATGGAAAGGTGAAGAATATCGACCAA
AT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10540:10009..10260-

>mRNA_D-dudresnayi_contig10540.592.1 ID=mRNA_D-dudresnayi_contig10540.592.1|Name=mRNA_D-dudresnayi_contig10540.592.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at D-dudresnayi_contig10540:10009..10260- (Desmarestia dudresnayi DdudBR16 monoicous)
CATTGGACAACAGCAGAAGTTGCTAACTGGCTTGTAACCATAGGTTATAA
TGATTTGATTCCTATTTTTCATCGTGCTAATATAAACGGTTTAGCTTTAA
CAAGACTAAATGATAATTTATTAAGAGAAATAGGAGTGTTAAATGTTGGT
ACACGTCTTCAATTTATGAATGAAGTTATTAAAATACAAGCAGTATCACG
TTCAAGTTGGAGAAATACAATTTTATGGAAAGGTGAAGAATATCGACCAA
ATCATTGGACAACAGCAGAAGTTGCTAACTGGCTTGTAACCATAGGTTAT
AATGATTTGATTCCTATTTTTCATCGTGCTAATATAAACGGTTTAGCTTT
AACAAGACTAAATGATAATTTATTAAGAGAAATAGGAGTGTTAAATGTTG
GTACACGTCTTCAATTTATGAATGAAGTTATTAAAATACAAGCAGTATCA
CGTTCAAGTTGGAGAAATACAATTTTATGGAAAGGTGAAGAATATCGACC
AAAT
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