mRNA_D-dudresnayi_contig10419.452.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10419.452.1
Unique NamemRNA_D-dudresnayi_contig10419.452.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: D7FQ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ42_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 4.860e-43
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 ISACRKLGWKAVVQKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQKEQEG 252
            +SACR+L WKAVVQKYVERPLLVQG+KFDIRQWVLVTSCNPLV+WGFDESY RFSSR FTM A SLSDR +HLCNHSVQK+Q G
Sbjct:   84 VSACRQLEWKAVVQKYVERPLLVQGYKFDIRQWVLVTSCNPLVVWGFDESYTRFSSRPFTMDAPSLSDRLVHLCNHSVQKQQNG 167          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: A0A6H5KWV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 5.660e-41
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    1 ISACRKLGWKAVVQKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQKEQ 246
            +SACR+L WKAVVQKYVERPLLVQG+KFDIRQWVLVTSCNPLV+WGF+ESY RFSSR FTM A SLSDR +HLCNHSVQK+Q
Sbjct:  259 VSACRQLEWKAVVQKYVERPLLVQGYKFDIRQWVLVTSCNPLVVWGFEESYTRFSSRPFTMDAPSLSDRLVHLCNHSVQKQQ 340          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: A0A7S2G7S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7S0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.210e-27
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   40 QKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQKEQEGG 255
            QKY+ERPLLVQ  KFDIR WVLVTS  PLV+WGF E Y RFSS+ F++ + +L+DR +HLCN+SVQK+ EGG
Sbjct:    1 QKYIERPLLVQRRKFDIRLWVLVTSTVPLVVWGFSECYLRFSSQAFSLESGALADRMVHLCNYSVQKDAEGG 72          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: A0A5A8D9H7_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9H7_CAFRO)

HSP 1 Score: 104 bits (259), Expect = 1.620e-23
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   34 VVQKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQKEQEGGFAMSEIDSN 282
            VVQKY+ERPLLV+G KFDIRQWVLVTS NPL +W + +SY RF  R F++ AS+L DR++HL N+S+QK  E  F  S+I  N
Sbjct:  584 VVQKYIERPLLVRGRKFDIRQWVLVTSWNPLTVWFYADSYLRFCVRPFSLAASALRDRYVHLANNSIQKHAEE-FEASDIAGN 665          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: A0A7S3JS53_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS53_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.070e-21
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 ISACRKLGWKAVVQKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQKEQEGGFAMSEIDSNNPPPAASN 306
            IS  ++  +K VVQKY+ERPLLV+G KFDIRQW+L+T  NPL ++GF   YARF+S  + ++  SL +RF HLCN SVQ   +      +I +++ PP  +N
Sbjct:  130 ISQAQQRQYKVVVQKYIERPLLVRGRKFDIRQWILITDTNPLTVYGFSRCYARFASESWNLN--SLHNRFAHLCNFSVQTFSQ----QQDITADDFPPFQNN 225          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: A0A835ZKD6_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKD6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.290e-21
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    4 SACRKLGWKAVVQKYVERPLLVQGF-KFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQ 237
             A   L  + V+QKYVERPLL+ G  KFD+RQWV+VTS  PLV+WG+ E+YAR +SR ++  A+   DRF+HLCNH+VQ
Sbjct:  270 EASAALRHRVVIQKYVERPLLLPGGRKFDLRQWVMVTSVAPLVVWGYSEAYARLASRPYSSDAAHAGDRFMHLCNHAVQ 348          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: L1JLX1_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JLX1_GUITC)

HSP 1 Score: 92.4 bits (228), Expect = 1.250e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   13 RKLGWKAVVQKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQKEQEG-----GFAMSEIDS 279
            +++ W  VVQKY+ERP L+   KFDIRQWV+VT  NPL +W +DE Y RFS   F+M    L D + HLCN+S+QKE E        +M ++DS
Sbjct:   47 KEMHW--VVQKYLERPFLINRRKFDIRQWVMVTDWNPLTVWFYDECYLRFSMSDFSM--KDLEDNYTHLCNNSIQKEGENFEQVKNSSMWDLDS 136          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: A0A812BAY5_SEPPH (TTLL3_8 n=2 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BAY5_SEPPH)

HSP 1 Score: 95.9 bits (237), Expect = 1.330e-20
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   28 KAVVQKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQKEQEGGFAMSEIDSNN 285
            K V+QKY+ERPLL+   KFDIRQW LVT  NPL +W + +SY RF S++FT+   S  D  IHLCN++VQK  + G    E+  NN
Sbjct:  332 KYVIQKYIERPLLIYNCKFDIRQWFLVTDWNPLTMWFYRDSYLRFCSQQFTL---SKFDESIHLCNNAVQKNYKNGPRAKELPENN 414          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: A0A8K1CQH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQH6_PYTOL)

HSP 1 Score: 94.0 bits (232), Expect = 5.440e-20
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    7 ACRKLGWKAVVQKYVERPLLVQ-GFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQK 240
            A RK+ W  VVQKYVERPLL+Q G KFD+RQWVL+TS  PL ++ + E Y RF S  FT+    LSD+F+HL N+SVQK
Sbjct:  273 AGRKVSW--VVQKYVERPLLLQDGRKFDVRQWVLITSLEPLQVYWYHECYLRFCSSPFTLDVDQLSDQFVHLSNYSVQK 349          
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Match: A0A8J1T7P8_OWEFU (Ofus.G012850 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1T7P8_OWEFU)

HSP 1 Score: 93.6 bits (231), Expect = 9.700e-20
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   34 VVQKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDESYARFSSRRFTMHASSLSDRFIHLCNHSVQKEQEGGFAMSEIDSNN 285
            VVQKY+ERPLLV   KFDIRQW LVT  NPL +W + +SY RFSS+ +T+   +L +R IHLCN+SVQK    G   + +  +N
Sbjct:  712 VVQKYIERPLLVYNTKFDIRQWFLVTDWNPLTVWLYQDSYLRFSSQEYTL--DNLDNRAIHLCNNSVQKYYTVGERSTSLPDDN 793          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10419.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ42_ECTSI4.860e-4384.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWV8_9PHAE5.660e-4184.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G7S0_9STRA2.210e-2766.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A5A8D9H7_CAFRO1.620e-2360.24Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S3JS53_9STRA1.070e-2148.04Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835ZKD6_9STRA2.290e-2156.96Tubulin-tyrosine ligase family-domain-containing p... [more]
L1JLX1_GUITC1.250e-2048.94Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A812BAY5_SEPPH1.330e-2052.33TTLL3_8 n=2 Tax=Sepia pharaonis TaxID=158019 RepID... [more]
A0A8K1CQH6_PYTOL5.440e-2059.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J1T7P8_OWEFU9.700e-2053.57Ofus.G012850 protein n=1 Tax=Owenia fusiformis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10419contigD-dudresnayi_contig10419:4043..5213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog2880.D7FQ42
KEGG koko:K16608
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10419.452.1prot_D-dudresnayi_contig10419.452.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10419 4043..5213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.4358983-CDS-D-dudresnayi_contig10419:4042..42281622927541.4358983-CDS-D-dudresnayi_contig10419:4042..4228Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 4043..4228 -
1690556799.779494-CDS-D-dudresnayi_contig10419:4042..42281690556799.779494-CDS-D-dudresnayi_contig10419:4042..4228Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 4043..4228 -
1622927541.4496884-CDS-D-dudresnayi_contig10419:4619..47331622927541.4496884-CDS-D-dudresnayi_contig10419:4619..4733Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 4620..4733 -
1690556799.793454-CDS-D-dudresnayi_contig10419:4619..47331690556799.793454-CDS-D-dudresnayi_contig10419:4619..4733Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 4620..4733 -
1622927541.4656162-CDS-D-dudresnayi_contig10419:5141..52131622927541.4656162-CDS-D-dudresnayi_contig10419:5141..5213Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 5142..5213 -
1690556799.8023837-CDS-D-dudresnayi_contig10419:5141..52131690556799.8023837-CDS-D-dudresnayi_contig10419:5141..5213Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 5142..5213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10419.452.1

>prot_D-dudresnayi_contig10419.452.1 ID=prot_D-dudresnayi_contig10419.452.1|Name=mRNA_D-dudresnayi_contig10419.452.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=124bp
ISACRKLGWKAVVQKYVERPLLVQGFKFDIRQWVLVTSCNPLVLWGFDES
YARFSSRRFTMHASSLSDRFIHLCNHSVQKEQEGGFAMSEIDSNNPPPAA
SNSGYAPWAGFGPHQREHGEGGGA
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mRNA from alignment at D-dudresnayi_contig10419:4043..5213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10419.452.1 ID=mRNA_D-dudresnayi_contig10419.452.1|Name=mRNA_D-dudresnayi_contig10419.452.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1171bp|location=Sequence derived from alignment at D-dudresnayi_contig10419:4043..5213- (Desmarestia dudresnayi DdudBR16 monoicous)
ATCTCGGCCTGCCGAAAGCTCGGGTGGAAAGCGGTGGTGCAGAAGTACGT GGAACGCCCGCTGCTTGTCCAGGTTAATTTTGTAGCGATCGTGGGAGTAC TGTATCATCTGTGAACAGATCGCCTCTTTCATGCGCTACGACAGTAGTGC TACGCAGAATGTTGAAACGTGTAATACCGGAAACGAGTTGTGGCCAATAT GTAGATAATGTATTGTGCTGTACCCCAATGTCTCTTCGTACAGTACGTAG TTTCGCCGGAGTTGACCCGGATGCCTTGCATCCGCAGTGATGGTGACACC GCCCGGCAATGCTTAGCCGTATGCTGCAGATGGTGGGACTCGCTGCCTTG ACCTTCGTCTTTGCGAAAACTCTCCAACAGGCTGTGATGATCGCCAATTG AGGACGCCCCCCCCCTTTCCCCGCGCGTCGTCTCGCCTCCCACGCCCCTC CTCTCCAAACATGTGTCCGACAAAATCAAGGGGTTCAAGTTTGACATTCG TCAGTGGGTGCTGGTGACGTCATGCAATCCGCTGGTGCTCTGGGGTTTCG ACGAGAGCTACGCTCGTTTCAGCTCCAGGCGGTTCACCATGCATGTAAGA CTTGGGCGTACTTTTTCGGTTTAAAATCCGGTGGTGCATCGCGCATTATG TGTGTAAGCAGACTACAGATACATACAGCATGTATGTAGAGACGCACGCA AAATTGAAGTGGTAATGAAAGAGAGAAGGTATCCTTTTACAATATACCAG TACGTTCTGCACCCTTGGATGTAGTCGGGAACCATCATCGTGGGGCGCCT GTTGGCAGCACAATACCGAATGATCGACCATCGAGAATCCCTCCTCCTGC GAGGGACAACGGTGCTCCATCCCTCGAGGAACGTGTTACTAATGGTCTAC TACGACGAACAGCGAAGATATTTATGAACCTCATCCGTATACCCCCCCCC CCCGGGCCTCGCCCCCCCGCTGCGTCCGGTCACAGGCCTCAAGCCTATCC GACAGGTTCATACACCTCTGCAACCACTCGGTCCAGAAAGAACAAGAAGG GGGCTTTGCGATGTCGGAGATCGATTCAAATAACCCACCCCCTGCTGCAA GCAACAGCGGGTATGCTCCATGGGCAGGCTTCGGACCACATCAACGCGAA CACGGAGAAGGAGGGGGAGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10419:4043..5213-

>mRNA_D-dudresnayi_contig10419.452.1 ID=mRNA_D-dudresnayi_contig10419.452.1|Name=mRNA_D-dudresnayi_contig10419.452.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at D-dudresnayi_contig10419:4043..5213- (Desmarestia dudresnayi DdudBR16 monoicous)
ATCTCGGCCTGCCGAAAGCTCGGGTGGAAAGCGGTGGTGCAGAAGTACGT
GGAACGCCCGCTGCTTGTCCAGATCTCGGCCTGCCGAAAGCTCGGGTGGA
AAGCGGTGGTGCAGAAGTACGTGGAACGCCCGCTGCTTGTCCAGGGGTTC
AAGTTTGACATTCGTCAGTGGGTGCTGGTGACGTCATGCAATCCGCTGGT
GCTCTGGGGTTTCGACGAGAGCTACGCTCGTTTCAGCTCCAGGCGGTTCA
CCATGCATGGGTTCAAGTTTGACATTCGTCAGTGGGTGCTGGTGACGTCA
TGCAATCCGCTGGTGCTCTGGGGTTTCGACGAGAGCTACGCTCGTTTCAG
CTCCAGGCGGTTCACCATGCATGCCTCAAGCCTATCCGACAGGTTCATAC
ACCTCTGCAACCACTCGGTCCAGAAAGAACAAGAAGGGGGCTTTGCGATG
TCGGAGATCGATTCAAATAACCCACCCCCTGCTGCAAGCAACAGCGGGTA
TGCTCCATGGGCAGGCTTCGGACCACATCAACGCGAACACGGAGAAGGAG
GGGGAGCGGCCTCAAGCCTATCCGACAGGTTCATACACCTCTGCAACCAC
TCGGTCCAGAAAGAACAAGAAGGGGGCTTTGCGATGTCGGAGATCGATTC
AAATAACCCACCCCCTGCTGCAAGCAACAGCGGGTATGCTCCATGGGCAG
GCTTCGGACCACATCAACGCGAACACGGAGAAGGAGGGGGAGCG
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