mRNA_D-dudresnayi_contig10415.447.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10415.447.1
Unique NamemRNA_D-dudresnayi_contig10415.447.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10415.447.1 vs. uniprot
Match: A0A7S3GN39_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN39_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.990e-47
Identity = 79/122 (64.75%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:    1 CVLEVRVDAFTGAVTATQTKGRCLAEASASFWGRLQVAFVLLLPFLLIGLYYLYSYASDWYTTHQHTAWLVDFYEKNAPEKLKDPEFVARTIAKYKDRMFLLWRGLERSYHVKWVPPHSIVD 366
            C L VR+D  TG V ATQ KG+ ++ A + FWGRLQ+AFVL+LPF LI L+Y   + + WY T QHTAWL+DFY+KNAPEKLKDP++VARTI+KY+ RMF LWRGLER+Y VKW PP SI+D
Sbjct:  610 CGLSVRLDPATGGVCATQIKGKTISAARSEFWGRLQLAFVLVLPFALIALWYYSGFITKWYVTRQHTAWLLDFYQKNAPEKLKDPQYVARTISKYEGRMFQLWRGLERTYKVKWQPPQSILD 731
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10415.447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3GN39_9STRA2.990e-4764.75Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10415contigD-dudresnayi_contig10415:4542..5029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.7434385-CDS-D-dudresnayi_contig10415:4541..46671622927540.7434385-CDS-D-dudresnayi_contig10415:4541..4667Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 4542..4667 -
1690556799.5082448-CDS-D-dudresnayi_contig10415:4541..46671690556799.5082448-CDS-D-dudresnayi_contig10415:4541..4667Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 4542..4667 -
1622927540.7561502-CDS-D-dudresnayi_contig10415:4789..50291622927540.7561502-CDS-D-dudresnayi_contig10415:4789..5029Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 4790..5029 -
1690556799.5194376-CDS-D-dudresnayi_contig10415:4789..50291690556799.5194376-CDS-D-dudresnayi_contig10415:4789..5029Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 4790..5029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10415.447.1prot_D-dudresnayi_contig10415.447.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10415 4542..5029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10415.447.1

>prot_D-dudresnayi_contig10415.447.1 ID=prot_D-dudresnayi_contig10415.447.1|Name=mRNA_D-dudresnayi_contig10415.447.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=122bp
CVLEVRVDAFTGAVTATQTKGRCLAEASASFWGRLQVAFVLLLPFLLIGL
YYLYSYASDWYTTHQHTAWLVDFYEKNAPEKLKDPEFVARTIAKYKDRMF
LLWRGLERSYHVKWVPPHSIVD
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mRNA from alignment at D-dudresnayi_contig10415:4542..5029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10415.447.1 ID=mRNA_D-dudresnayi_contig10415.447.1|Name=mRNA_D-dudresnayi_contig10415.447.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=488bp|location=Sequence derived from alignment at D-dudresnayi_contig10415:4542..5029- (Desmarestia dudresnayi DdudBR16 monoicous)
TGCGTGCTGGAGGTGCGGGTGGACGCATTCACTGGTGCTGTAACTGCCAC
ACAAACCAAGGGACGTTGCTTGGCGGAAGCATCTGCTTCTTTTTGGGGTC
GGTTGCAGGTCGCATTTGTGCTGTTGCTGCCCTTCCTGCTGATCGGGCTA
TACTATTTGTACAGCTACGCCTCTGACTGGTACACCACGCACCAACACAC
TGCATGGCTGGTGGATTTTTATGAAAAGAACGCACCCGAGGTAAGACCTG
CTGATGCTTGTGGATTCTTCATAGTTATTCTTCGGTTCTTTCAACACACC
CTCTTTCTATCTATTGTGCTAGCTCATTTGGTATTGCTCGTTTTGCGTTG
TTTTTCCTCTAGAAACTCAAAGATCCAGAGTTTGTGGCGCGTACGATTGC
CAAGTACAAGGACCGCATGTTCCTACTGTGGCGCGGCCTTGAGCGCAGCT
ACCATGTCAAGTGGGTGCCGCCGCACAGCATCGTGGAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10415:4542..5029-

>mRNA_D-dudresnayi_contig10415.447.1 ID=mRNA_D-dudresnayi_contig10415.447.1|Name=mRNA_D-dudresnayi_contig10415.447.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at D-dudresnayi_contig10415:4542..5029- (Desmarestia dudresnayi DdudBR16 monoicous)
TGCGTGCTGGAGGTGCGGGTGGACGCATTCACTGGTGCTGTAACTGCCAC
ACAAACCAAGGGACGTTGCTTGGCGGAAGCATCTGCTTCTTTTTGGGGTC
GGTTGCAGGTCGCATTTGTGCTGTTGCTGCCCTTCCTGCTGATCGGGCTA
TACTATTTGTACAGCTACGCCTCTGACTGGTACACCACGCACCAACACAC
TGCATGGCTGGTGGATTTTTATGAAAAGAACGCACCCGAGTGCGTGCTGG
AGGTGCGGGTGGACGCATTCACTGGTGCTGTAACTGCCACACAAACCAAG
GGACGTTGCTTGGCGGAAGCATCTGCTTCTTTTTGGGGTCGGTTGCAGGT
CGCATTTGTGCTGTTGCTGCCCTTCCTGCTGATCGGGCTATACTATTTGT
ACAGCTACGCCTCTGACTGGTACACCACGCACCAACACACTGCATGGCTG
GTGGATTTTTATGAAAAGAACGCACCCGAGAAACTCAAAGATCCAGAGTT
TGTGGCGCGTACGATTGCCAAGTACAAGGACCGCATGTTCCTACTGTGGC
GCGGCCTTGAGCGCAGCTACCATGTCAAGTGGGTGCCGCCGCACAGCATC
GTGGACAAACTCAAAGATCCAGAGTTTGTGGCGCGTACGATTGCCAAGTA
CAAGGACCGCATGTTCCTACTGTGGCGCGGCCTTGAGCGCAGCTACCATG
TCAAGTGGGTGCCGCCGCACAGCATCGTGGAC
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