mRNA_D-dudresnayi_contig10415.446.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10415.446.1
Unique NamemRNA_D-dudresnayi_contig10415.446.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: A0A642V6Q8_9ASCO (HMG box domain-containing protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V6Q8_9ASCO)

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-17
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   19 GKAKKPKKDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            G A K KKD NAPK +L++YMFFA E+R  + ++ PG+S  +V +  G RWK L+ E++ PYED  KADK+RY
Sbjct:   14 GAAPKKKKDPNAPKRSLSAYMFFANEQRDTVRSENPGISFGQVGRVLGERWKALTDEEKRPYEDKAKADKQRY 86          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: A0A3A2Z5I3_9EURO (HMG box domain-containing protein n=5 Tax=Aspergillus TaxID=5052 RepID=A0A3A2Z5I3_9EURO)

HSP 1 Score: 79.3 bits (194), Expect = 2.530e-17
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   19 GKAKKPKKDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            G  ++ KKD NAPK  L++YMFFA E+R K+  D PG+S  +V K  G +WK LS E R PYE+   ADK+RY
Sbjct:   14 GTVERKKKDPNAPKRGLSAYMFFANEQREKVREDNPGISFGQVGKMLGEKWKNLSDEDRRPYEEKAAADKKRY 86          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: C9SMP9_VERA1 (Nucleosome binding protein n=6 Tax=Verticillium TaxID=1036719 RepID=C9SMP9_VERA1)

HSP 1 Score: 77.0 bits (188), Expect = 1.800e-16
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   22 KAKKPKKDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            KAK+ KKD NAPK  L++YMFFA E+R  +  + PG+S  +V K  G RWK L+ +QR PYE    ADK+RY
Sbjct:   14 KAKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRGPYEAKAVADKKRY 85          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: A0A7S2FX93_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FX93_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.430e-16
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   16 KGKAKKPK--KDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            KGK KK K  KD NAPK A  +Y FF  + R    A+ PGLSVTE+SK  GA+WKEL+ E+++ +E+  KADKERY
Sbjct:   50 KGKGKKGKAAKDPNAPKRATTAYFFFLADTRETAKAENPGLSVTELSKVIGAKWKELTPEEKSKFEEKAKADKERY 125          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: J4C8N9_THEOR (High-mobility-group protein n=3 Tax=Theileria orientalis TaxID=68886 RepID=J4C8N9_THEOR)

HSP 1 Score: 75.9 bits (185), Expect = 4.050e-16
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   22 KAKKPKKDKNAPKGALASYMFFAKEERSKILADTPGLS--VTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            K K+ KKD NAPK AL+SYMFFAKE+R++++ + P L+  V  V K  GA W  L   ++APYE L +AD+ERY
Sbjct:   11 KGKRTKKDPNAPKRALSSYMFFAKEKRNELIKENPDLAKDVATVGKLVGAAWNSLDDSEKAPYEKLAEADRERY 84          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: A0A0A1MTG4_RHIZD (HMG box domain-containing protein n=4 Tax=Rhizopus TaxID=4842 RepID=A0A0A1MTG4_RHIZD)

HSP 1 Score: 75.9 bits (185), Expect = 4.500e-16
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   22 KAKKPKKDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            K K+ KKD NAPK AL++YMFF++  R K++ + PG    E+ K  GARWKELS E++ P+ +  +ADK+RY
Sbjct:   18 KKKRGKKDPNAPKRALSAYMFFSQANREKVIKENPGAKFGEIGKILGARWKELSDEEKKPFVEQAEADKKRY 89          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: A0A0G4KN10_9PEZI (Uncharacterized protein n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4KN10_9PEZI)

HSP 1 Score: 80.1 bits (196), Expect = 7.250e-16
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   22 KAKKPKKDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            KAK+ KKD NAPK  L++YMFFA E+R  + A+ PG+S  +V +  G RWK LS +QRAPYE    ADK+RY
Sbjct:  119 KAKRAKKDPNAPKRGLSAYMFFANEQRENVRAEHPGISFGQVGRNLGERWKGLSEKQRAPYEAKAVADKKRY 190          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: A0A1E5RE12_9ASCO (Non-histone chromosomal protein 6 n=1 Tax=Hanseniaspora osmophila TaxID=56408 RepID=A0A1E5RE12_9ASCO)

HSP 1 Score: 75.1 bits (183), Expect = 8.360e-16
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   37 KKDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            KKD NAPK AL++YMFFA E R  + A+ PG+S  +V K  G +WK+LS +++APY+    ADK+RY
Sbjct:   16 KKDPNAPKRALSAYMFFANENRDIVRAENPGISFGQVGKMLGEKWKQLSEDEKAPYDAKAGADKKRY 82          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: A0A7S2CA52_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CA52_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 9.690e-16
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   16 KGKAKKPK--KDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            KGK KK K  KD NAPK A  +Y FF  + R    A+ PGLSVTE+SK  GA+WKEL+ E+++ +E+  KADKERY
Sbjct:  119 KGKGKKGKAAKDPNAPKRATTAYFFFLADTRETAKAENPGLSVTELSKVIGAKWKELTPEEKSKFEEKAKADKERY 194          
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Match: A0A2J8FET8_VERDA (HMG box domain-containing protein n=1 Tax=Verticillium dahliae TaxID=27337 RepID=A0A2J8FET8_VERDA)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   22 KAKKPKKDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVSKQAGARWKELSAEQRAPYEDLFKADKERY 237
            KAK+ KKD NAPK  L++YMFFA E+R  +  + PG+S  +V K  G RWK L+ +QR PYE    ADK+RY
Sbjct:   88 KAKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRGPYEAKAVADKKRY 159          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10415.446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A642V6Q8_9ASCO1.100e-1752.05HMG box domain-containing protein n=1 Tax=Trichomo... [more]
A0A3A2Z5I3_9EURO2.530e-1752.05HMG box domain-containing protein n=5 Tax=Aspergil... [more]
C9SMP9_VERA11.800e-1652.78Nucleosome binding protein n=6 Tax=Verticillium Ta... [more]
A0A7S2FX93_9STRA2.430e-1655.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
J4C8N9_THEOR4.050e-1652.70High-mobility-group protein n=3 Tax=Theileria orie... [more]
A0A0A1MTG4_RHIZD4.500e-1650.00HMG box domain-containing protein n=4 Tax=Rhizopus... [more]
A0A0G4KN10_9PEZI7.250e-1655.56Uncharacterized protein n=1 Tax=Verticillium longi... [more]
A0A1E5RE12_9ASCO8.360e-1652.24Non-histone chromosomal protein 6 n=1 Tax=Hansenia... [more]
A0A7S2CA52_9STRA9.690e-1655.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2J8FET8_VERDA1.060e-1552.78HMG box domain-containing protein n=1 Tax=Verticil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10415contigD-dudresnayi_contig10415:432..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score83.6
Seed ortholog evalue5.2e-14
Seed eggNOG ortholog33188.XP_002582654.1
Preferred nameNHP6
GOsGO:0000228,GO:0000785,GO:0000790,GO:0001192,GO:0001195,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006383,GO:0006384,GO:0006385,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031497,GO:0031974,GO:0031981,GO:0032774,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0070898,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Non-histone chromosomal protein 6
EggNOG OGs20HTP@147545,3A6QT@33154,3B3QK@33183,3P5CR@4751,3QX7Y@4890,COG5648@1,KOG0381@2759
COG Functional cat.K
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size267
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10415.446.1prot_D-dudresnayi_contig10415.446.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10415 432..832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.9749937-CDS-D-dudresnayi_contig10415:431..4921622927540.9749937-CDS-D-dudresnayi_contig10415:431..492Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 432..492 +
1690556799.5634778-CDS-D-dudresnayi_contig10415:431..4921690556799.5634778-CDS-D-dudresnayi_contig10415:431..492Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 432..492 +
1622927541.0248456-CDS-D-dudresnayi_contig10415:560..6071622927541.0248456-CDS-D-dudresnayi_contig10415:560..607Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 561..607 +
1690556799.58105-CDS-D-dudresnayi_contig10415:560..6071690556799.58105-CDS-D-dudresnayi_contig10415:560..607Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 561..607 +
1622927541.0403733-CDS-D-dudresnayi_contig10415:673..8321622927541.0403733-CDS-D-dudresnayi_contig10415:673..832Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 674..832 +
1690556799.6001155-CDS-D-dudresnayi_contig10415:673..8321690556799.6001155-CDS-D-dudresnayi_contig10415:673..832Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10415 674..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10415.446.1

>prot_D-dudresnayi_contig10415.446.1 ID=prot_D-dudresnayi_contig10415.446.1|Name=mRNA_D-dudresnayi_contig10415.446.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=89bp
KEESAKGKAKKPKKDKNAPKGALASYMFFAKEERSKILADTPGLSVTEVS
KQAGARWKELSAEQRAPYEDLFKADKERYILYCIYIYI*
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mRNA from alignment at D-dudresnayi_contig10415:432..832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10415.446.1 ID=mRNA_D-dudresnayi_contig10415.446.1|Name=mRNA_D-dudresnayi_contig10415.446.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=401bp|location=Sequence derived from alignment at D-dudresnayi_contig10415:432..832+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAGGAAGAGAGTGCGAAAGGTAAAGCTAAGAAACCCAAGAAGGATAAGAA CGCACCCAAAGGTAGCCTTTTTGCAGGAAGTGGAGTGCTAATATTTCTTA CTGACTCTGTATTTTTTGCTTTCCTGCAGGTGCTTTGGCCTCTTATATGT TCTTCGCCAAGGAGGAGCGCAGCAAGGTGAGTAACCCGAGACATTAGAGT GAGCTGCTGACTGGACCCTTACTTTCTCCACATTTATCATAGATTCTGGC GGATACCCCCGGGCTGTCCGTCACGGAGGTGAGCAAGCAGGCCGGGGCGC GATGGAAAGAGCTCAGCGCGGAACAGCGCGCACCCTATGAAGATTTATTC AAGGCTGACAAAGAAAGGTACATATTATACTGTATATATATATACATATA G
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10415:432..832+

>mRNA_D-dudresnayi_contig10415.446.1 ID=mRNA_D-dudresnayi_contig10415.446.1|Name=mRNA_D-dudresnayi_contig10415.446.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at D-dudresnayi_contig10415:432..832+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAGGAAGAGAGTGCGAAAGGTAAAGCTAAGAAACCCAAGAAGGATAAGAA
CGCACCCAAAGAAGGAAGAGAGTGCGAAAGGTAAAGCTAAGAAACCCAAG
AAGGATAAGAACGCACCCAAAGGTGCTTTGGCCTCTTATATGTTCTTCGC
CAAGGAGGAGCGCAGCAAGGTGCTTTGGCCTCTTATATGTTCTTCGCCAA
GGAGGAGCGCAGCAAGATTCTGGCGGATACCCCCGGGCTGTCCGTCACGG
AGGTGAGCAAGCAGGCCGGGGCGCGATGGAAAGAGCTCAGCGCGGAACAG
CGCGCACCCTATGAAGATTTATTCAAGGCTGACAAAGAAAGGTACATATT
ATACTGTATATATATATACATATAGATTCTGGCGGATACCCCCGGGCTGT
CCGTCACGGAGGTGAGCAAGCAGGCCGGGGCGCGATGGAAAGAGCTCAGC
GCGGAACAGCGCGCACCCTATGAAGATTTATTCAAGGCTGACAAAGAAAG
GTACATATTATACTGTATATATATATACATATAG
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