mRNA_D-dudresnayi_contig10408.441.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10408.441.1
Unique NamemRNA_D-dudresnayi_contig10408.441.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10408.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10408contigD-dudresnayi_contig10408:2221..2946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size324
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10408.441.1prot_D-dudresnayi_contig10408.441.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10408 2221..2906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.4126587-CDS-D-dudresnayi_contig10408:2220..24401622927540.4126587-CDS-D-dudresnayi_contig10408:2220..2440Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10408 2221..2440 +
1690556799.4014318-CDS-D-dudresnayi_contig10408:2220..24401690556799.4014318-CDS-D-dudresnayi_contig10408:2220..2440Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10408 2221..2440 +
1622927540.4250035-CDS-D-dudresnayi_contig10408:2802..29061622927540.4250035-CDS-D-dudresnayi_contig10408:2802..2906Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10408 2803..2906 +
1690556799.4133303-CDS-D-dudresnayi_contig10408:2802..29061690556799.4133303-CDS-D-dudresnayi_contig10408:2802..2906Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10408 2803..2906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.4353075-UTR-D-dudresnayi_contig10408:2906..29461622927540.4353075-UTR-D-dudresnayi_contig10408:2906..2946Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10408 2907..2946 +
1690556799.423298-UTR-D-dudresnayi_contig10408:2906..29461690556799.423298-UTR-D-dudresnayi_contig10408:2906..2946Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10408 2907..2946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10408.441.1

>prot_D-dudresnayi_contig10408.441.1 ID=prot_D-dudresnayi_contig10408.441.1|Name=mRNA_D-dudresnayi_contig10408.441.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=108bp
VGGVAPPITRPEAEWICGLASGISGVCGGANNWRHKYKLTSPGWGVDRYL
FNEHYNIISQEEFEVSRTFWYSDDGCTRSKKICGANEYCRSRVRGNKRDN
LRRGVAD*
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mRNA from alignment at D-dudresnayi_contig10408:2221..2946+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10408.441.1 ID=mRNA_D-dudresnayi_contig10408.441.1|Name=mRNA_D-dudresnayi_contig10408.441.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=726bp|location=Sequence derived from alignment at D-dudresnayi_contig10408:2221..2946+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTCGGGGGAGTTGCGCCACCAATCACGCGACCGGAAGCTGAGTGGATATG
TGGCCTCGCGTCAGGTATCAGTGGTGTATGCGGTGGCGCCAACAACTGGC
GACACAAGTACAAATTGACCTCGCCGGGCTGGGGCGTCGACAGATATCTC
TTCAACGAGCACTACAACATCATCAGTCAGGAGGAGTTTGAAGTATCGCG
TACGTTCTGGTACAGTGACGGTGAGAGCAGGCGTTGTCGCGGTATTACTC
ACAGGGTTGTGTTTGGGGAAGGAGGGACATTTTGGCAAAAACCTGAACTA
TGGACATTATAGTTAAAAAAAAACGCCGCGCATGTTATAGACTACAGTAT
ATGCCGTAATTTTAACCGATTAAAGTCCGACACATAATTACGTATTCTTC
GTTTTTTCGTTATTTTCTTGTGTTGAATGCATGGTGCCACTACAGCGAGG
ACAAGGTGGTCCCGCCTGTTCTGTTGGCGTCGGGCGTTCAGTATTTGTAG
CGGTTATATAATTGAAGATACTTCTCCCTCCCAGTCCCGTTACACCATAT
TGCCGTGACATGCCTTTGTTACAAATTGGCAGATGGTTGCACGCGGAGCA
AGAAGATATGCGGAGCGAATGAGTATTGTCGGTCGCGAGTCCGGGGGAAT
AAACGTGATAACTTGAGGCGAGGAGTGGCGGATTGATGGAAAGCCGCGTT
AAACGAAGGAGCCGGAGAGAAGGAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10408:2221..2946+

>mRNA_D-dudresnayi_contig10408.441.1 ID=mRNA_D-dudresnayi_contig10408.441.1|Name=mRNA_D-dudresnayi_contig10408.441.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at D-dudresnayi_contig10408:2221..2946+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTCGGGGGAGTTGCGCCACCAATCACGCGACCGGAAGCTGAGTGGATATG
TGGCCTCGCGTCAGGTATCAGTGGTGTATGCGGTGGCGCCAACAACTGGC
GACACAAGTACAAATTGACCTCGCCGGGCTGGGGCGTCGACAGATATCTC
TTCAACGAGCACTACAACATCATCAGTCAGGAGGAGTTTGAAGTATCGCG
TACGTTCTGGTACAGTGACGGTCGGGGGAGTTGCGCCACCAATCACGCGA
CCGGAAGCTGAGTGGATATGTGGCCTCGCGTCAGGTATCAGTGGTGTATG
CGGTGGCGCCAACAACTGGCGACACAAGTACAAATTGACCTCGCCGGGCT
GGGGCGTCGACAGATATCTCTTCAACGAGCACTACAACATCATCAGTCAG
GAGGAGTTTGAAGTATCGCGTACGTTCTGGTACAGTGACGATGGTTGCAC
GCGGAGCAAGAAGATATGCGGAGCGAATGAGTATTGTCGGTCGCGAGTCC
GGGGGAATAAACGTGATAACTTGAGGCGAGGAGTGGCGGATTGAATGGTT
GCACGCGGAGCAAGAAGATATGCGGAGCGAATGAGTATTGTCGGTCGCGA
GTCCGGGGGAATAAACGTGATAACTTGAGGCGAGGAGTGGCGGATTGA
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