mRNA_D-dudresnayi_contig10407.439.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10407.439.1
Unique NamemRNA_D-dudresnayi_contig10407.439.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10407.439.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 5.110e-41
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = -1 
Query:    4 SWICPTSAYAMEAVRAEANVVALSCPSFFTREHAYLLFFSGGQGGRVSSLYSLWDH*DVEFSDMSSDEAKVCSHDRLELEGALDQARESVVRQLATSRCEPPDVLRFPVAADSDEGDDN 360
            +WICPTSA+AMEA RA+A   AL  PS FTR+ AYLLFFSGGQGGRVSS ++ WD+ D EFS+M+ D+AKVCSHDR ELEGA+D ARE ++R +A S   P  V+ FPV ADSD G D+
Sbjct:  511 TWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVSSSFAKWDYQDREFSEMTVDQAKVCSHDRQELEGAMDIARERIMRDIAESHRAPAGVVNFPVDADSDAGSDS 629
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BLAST of mRNA_D-dudresnayi_contig10407.439.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.200e-35
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -1 
Query:   19 SWICPTSAYAMEAVRAEANVVALSCPSFFTREHAYLLFFSGGQGGRVSSLYSLWDH*DVEFSDMSSDEAKVCSHDRLELEGALDQARESVVRQLATSRCEPPDVLRFPVAADSD 360
            SWICP+SA+ M+A RA+A  +AL CPS F R+HAYLLFF+GGQG R+ + +  WD  D EF+DM+ D+AKVCSHD LELEGA+D ARE  VR++A +R   P V  F    DSD
Sbjct:  162 SWICPSSAFPMDAARADAFGIALFCPSLFIRKHAYLLFFAGGQGDRIITSHEDWDTQDREFADMTVDQAKVCSHDHLELEGAMDAARERAVREVANARRYLPGVANFGFGPDSD 275
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BLAST of mRNA_D-dudresnayi_contig10407.439.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.580e-22
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = -1 
Query:  151 SWICPTSAYAMEAVRAEANVVALSCPSFFTREHAYLLFFSGGQGGRVSSLYSLWDH*DVEFSDMSSDEAK 360
            +WICPTSA+AMEA RA+A   AL  PS FTR+ AYLLFFSGGQGGRVSS +  WD+ D EFS+M+ D+AK
Sbjct:  243 TWICPTSAFAMEAARADAYFTALISPSLFTRKDAYLLFFSGGQGGRVSSSFEKWDYQDREFSEMTVDQAK 312
[Close]
BLAST of mRNA_D-dudresnayi_contig10407.439.1 vs. uniprot
Match: D8LBK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK2_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 7.730e-14
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = -1 
Query:  217 SWICPTSAYAMEAVRAEANVVALSCPSFFTREHAYLLFFSGGQGGRVS 360
            +WICPTSA+AMEA RA+A   AL  PS FTR+ AYLLFFSGGQGGRVS
Sbjct:  336 TWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVS 383
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10407.439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FPH8_ECTSI5.110e-4163.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8U7_ECTSI1.200e-3557.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6N0_ECTSI4.580e-2267.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBK2_ECTSI7.730e-1475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10407contigD-dudresnayi_contig10407:10555..10914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.2936552-CDS-D-dudresnayi_contig10407:10554..109141622927540.2936552-CDS-D-dudresnayi_contig10407:10554..10914Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10407 10555..10914 +
1690556799.3383665-CDS-D-dudresnayi_contig10407:10554..109141690556799.3383665-CDS-D-dudresnayi_contig10407:10554..10914Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10407 10555..10914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10407.439.1prot_D-dudresnayi_contig10407.439.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10407 10555..10914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10407.439.1

>prot_D-dudresnayi_contig10407.439.1 ID=prot_D-dudresnayi_contig10407.439.1|Name=mRNA_D-dudresnayi_contig10407.439.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=120bp
GVVIAFIAVGGDGEAKNVRRFAAGCRKLPHDAFARLVQGALKLQPVVRAN
LSFVGGHVRELHVLVVPEAVQGAHTPSLPARKEQEVGVFAREERWARQGD
NIRLRSHCLHGVGTCGAYPG
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mRNA from alignment at D-dudresnayi_contig10407:10555..10914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10407.439.1 ID=mRNA_D-dudresnayi_contig10407.439.1|Name=mRNA_D-dudresnayi_contig10407.439.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at D-dudresnayi_contig10407:10555..10914+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGTGTTGTCATCGCCTTCATCGCTGTCGGCGGCGACGGGGAAGCGAAGAA
CGTCAGGAGGTTCGCAGCGGGATGTCGCAAGTTGCCGCACGACGCTTTCG
CGCGCCTGGTCCAAGGCGCCCTCAAGCTCCAACCTGTCGTGAGAGCAAAC
CTTAGCTTCGTCGGAGGACATGTCCGAGAACTCCACGTCTTAGTGGTCCC
AGAGGCTGTACAAGGAGCTCACACGCCCTCCCTGCCCGCCAGAAAAGAAC
AGGAGGTAGGCGTGTTCGCGCGTGAAGAAAGATGGGCACGACAAGGCGAC
AACATTCGCCTCCGCTCGCACTGCCTCCATGGCGTAGGCACTTGTGGGGC
ATATCCAGGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10407:10555..10914+

>mRNA_D-dudresnayi_contig10407.439.1 ID=mRNA_D-dudresnayi_contig10407.439.1|Name=mRNA_D-dudresnayi_contig10407.439.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at D-dudresnayi_contig10407:10555..10914+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGTGTTGTCATCGCCTTCATCGCTGTCGGCGGCGACGGGGAAGCGAAGAA
CGTCAGGAGGTTCGCAGCGGGATGTCGCAAGTTGCCGCACGACGCTTTCG
CGCGCCTGGTCCAAGGCGCCCTCAAGCTCCAACCTGTCGTGAGAGCAAAC
CTTAGCTTCGTCGGAGGACATGTCCGAGAACTCCACGTCTTAGTGGTCCC
AGAGGCTGTACAAGGAGCTCACACGCCCTCCCTGCCCGCCAGAAAAGAAC
AGGAGGTAGGCGTGTTCGCGCGTGAAGAAAGATGGGCACGACAAGGCGAC
AACATTCGCCTCCGCTCGCACTGCCTCCATGGCGTAGGCACTTGTGGGGC
ATATCCAGGAGGTGTTGTCATCGCCTTCATCGCTGTCGGCGGCGACGGGG
AAGCGAAGAACGTCAGGAGGTTCGCAGCGGGATGTCGCAAGTTGCCGCAC
GACGCTTTCGCGCGCCTGGTCCAAGGCGCCCTCAAGCTCCAACCTGTCGT
GAGAGCAAACCTTAGCTTCGTCGGAGGACATGTCCGAGAACTCCACGTCT
TAGTGGTCCCAGAGGCTGTACAAGGAGCTCACACGCCCTCCCTGCCCGCC
AGAAAAGAACAGGAGGTAGGCGTGTTCGCGCGTGAAGAAAGATGGGCACG
ACAAGGCGACAACATTCGCCTCCGCTCGCACTGCCTCCATGGCGTAGGCA
CTTGTGGGGCATATCCAGGA
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