mRNA_D-dudresnayi_contig10393.421.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10393.421.1
Unique NamemRNA_D-dudresnayi_contig10393.421.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10393.421.1 vs. uniprot
Match: D7G7X5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X5_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 8.350e-56
Identity = 107/156 (68.59%), Postives = 121/156 (77.56%), Query Frame = 1 
Query:    1 VRAIKGAMTERPVDPMETTMGENQLPKIPQDSVHRGHMESYLAAKASLRTATTIVDYLAALQDLRMAVKKQQGV-LSRAGE-DTPLGVPVKWVKQQLPGAERAYQVPTRHRGKSELAQLWKDMKRDTVSINRRVLKGERGPEAIVGALTRCILAQA 462
            V AIK AMTERPV+P ET +GE+QLP IP DS HR HMESYL+A+  LR AT+  DYL+AL+ L   V +  G  L   GE D+ +GVPVKWVKQQLPG+ER YQ   R RGKSELAQLWKDMKRDTVSIN RV+ GERGPE I+GALTRCILAQA
Sbjct:   52 VSAIKAAMTERPVNPDETILGEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGTGGGLQEGGEKDSSMGVPVKWVKQQLPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQA 207
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BLAST of mRNA_D-dudresnayi_contig10393.421.1 vs. uniprot
Match: A0A7S4HSG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSG3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.960e-11
Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 1 
Query:   82 IPQDSVHRGHMESYLAAKASLRTATTIVDYLAALQDLRM-------------------AVKKQQGVLSRAGEDTPLGVPVKWVKQQLPGAERAYQVPT-RHRGKSE-LAQLWKDMKRDTVSINRRVLKGE--RGPEAIVGALTRCILAQAR 465
            +P  S +R  +E YLA +++++ A++   Y+ AL  L +                   +     G          L VPV+W+K+Q+  A     V   R  G S  +AQLWKDM RD+V+IN  +LKG+   GPE IVGALTR I++  R
Sbjct:    3 VPSRSPYRADLEQYLAVQSAVKKASSREAYMRALSVLMLPGGAGGGGSVLPSPPSDLASQASDAGSAQSQPSGRSLNVPVQWIKEQVEVASGGDGVRAFREEGVSTGIAQLWKDMSRDSVTINGELLKGDSPHGPECIVGALTRSIMSHDR 153
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BLAST of mRNA_D-dudresnayi_contig10393.421.1 vs. uniprot
Match: A0A7S2U7T9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.990e-10
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 1 
Query:   49 ETTMGENQLP--KIPQDSVHRGHMESYLAAKASLRTATTIVDYLAALQDLRMAVKKQQGVLSRAGEDTPLGVPVKWVKQQLPGAERAYQVPTRHRGKSE---LAQLWKDMKRDTVSINRRVLKGE--RGPEAIVGALTRCIL 453
            E   G+++ P   IP  S  +  +  YL  +  ++TA +   YL +L       K+  GV        PL VPV+W+++ +  +  +       R +     + QLWKDM RD+VSIN ++ KG+   GPE I+GAL RCI+
Sbjct:  147 EAKKGKSRRPGSSIPAQSPFKNDLIHYLKVQTKIKTARSKTHYLGSL-------KRCVGV--------PLNVPVQWIREHVESSSSSITGAEAFREEDVSVGMKQLWKDMLRDSVSINGKIYKGDDPHGPERIMGALARCIM 273
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BLAST of mRNA_D-dudresnayi_contig10393.421.1 vs. uniprot
Match: A0A6U3S3W6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S3W6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.780e-10
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 1 
Query:   82 IPQDSVHRGHMESYLAAKASLRTATTIVDYLAALQDLRMAVKKQQGVLSRAGEDTPLGVPVKWVKQQLP------GAERAYQVPTRHRGKSELAQLWKDMKRDTVSINRRVLKGE--RGPEAIVGALTRCIL 453
            +P +S ++ ++E YL  +  ++ AT+  +Y+  L  L        GV        PL VPV+W+K+ +        A +A++  +   G   ++QLWKDM RD+VSIN  +  G+   GPE I+G LTRCI+
Sbjct:  186 VPPNSPYKQNLEEYLRVQKGVKNATSKEEYVGMLSLLC-------GV--------PLNVPVQWIKEHVETLSSSQNASKAFEEDSVSNG---ISQLWKDMLRDSVSINGDLFAGDSGHGPEQIIGELTRCIM 299
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BLAST of mRNA_D-dudresnayi_contig10393.421.1 vs. uniprot
Match: A0A1E7ETM5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETM5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.020e-9
Identity = 45/163 (27.61%), Postives = 81/163 (49.69%), Query Frame = 1 
Query:    1 VRAIKGAMTERPVDPMETTMGENQLPKIPQDSVHRGHMESYLAAKASLRTATTIVDYLAALQDLRMAVKKQQGVLSRAGEDTPLGVPVKWVKQQLPGAERAYQVPTRHRG------KSELAQLWKDMKRDTVSINRRVLKGE--RGPEAIVGALTRCILAQAR 465
            + AI  AM  R ++  ++     +   +   S ++  ++ YL  KA+L+ + +  +Y+              G+++ +G D PL +PV+W+ +QL                      S + QLW+D++RDT+ IN+ +  G+   GPE I+GALTR I+A +R
Sbjct:  209 LEAINDAMIGRSIN-QDSDNVHGRSGNVNSRSPYKDDLKLYLKIKANLKNSKSKKEYI-------------DGLINLSGRD-PLNIPVRWIMEQLENKNNGRTEDNTVGAFVETSINSSVEQLWRDLRRDTIRINKELFLGDSGHGPEKIIGALTRDIVAVSR 356
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BLAST of mRNA_D-dudresnayi_contig10393.421.1 vs. uniprot
Match: A0A7S1FMB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMB8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.390e-7
Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:   82 IPQDSVHRGHMESYLAAKASLRTATTIVDYLAALQDLRMAVKKQQGVLSRAGEDTPLGVPVKWVKQQLPGAERAYQVPTRHRGKSELAQLWKDMKRDTVSINRRVLKGER-GPEAIVGALTRCIL 453
            +P  S ++  +E +   + ++R A    +YL     L                +  L +PV W+++Q+  ++ A+Q      G + ++QLWKD+KRDTVSIN  V++G+  GPE I G+LT  IL
Sbjct:  566 VPLSSPYKKDIEQFTQRQTAVREAKIRSEYLDVFSGLW---------------NYSLSIPVFWIRKQM-NSDVAFQ----EEGIASISQLWKDLKRDTVSINGHVIRGDTDGPERIFGSLTTAIL 670
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10393.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G7X5_ECTSI8.350e-5668.59PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S4HSG3_9STRA1.960e-1134.44Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2U7T9_9STRA4.990e-1033.10Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U3S3W6_9STRA6.780e-1034.09Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7ETM5_9STRA8.020e-927.61Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1FMB8_9STRA2.390e-732.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10393contigD-dudresnayi_contig10393:7637..10261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.9e-46
Seed eggNOG ortholog2880.D7G7X5
EggNOG OGs2DN4Z@1,2S66D@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_010540.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size466
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10393.421.1prot_D-dudresnayi_contig10393.421.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10393 7637..10240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.968083-CDS-D-dudresnayi_contig10393:7636..77921622927538.968083-CDS-D-dudresnayi_contig10393:7636..7792Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10393 7637..7792 -
1690556798.7538264-CDS-D-dudresnayi_contig10393:7636..77921690556798.7538264-CDS-D-dudresnayi_contig10393:7636..7792Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10393 7637..7792 -
1622927538.9803479-CDS-D-dudresnayi_contig10393:8761..89511622927538.9803479-CDS-D-dudresnayi_contig10393:8761..8951Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10393 8762..8951 -
1690556798.769903-CDS-D-dudresnayi_contig10393:8761..89511690556798.769903-CDS-D-dudresnayi_contig10393:8761..8951Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10393 8762..8951 -
1622927538.9932353-CDS-D-dudresnayi_contig10393:10142..102401622927538.9932353-CDS-D-dudresnayi_contig10393:10142..10240Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10393 10143..10240 -
1690556798.7799551-CDS-D-dudresnayi_contig10393:10142..102401690556798.7799551-CDS-D-dudresnayi_contig10393:10142..10240Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10393 10143..10240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.0065575-UTR-D-dudresnayi_contig10393:10240..102611622927539.0065575-UTR-D-dudresnayi_contig10393:10240..10261Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10393 10241..10261 -
1690556798.7894711-UTR-D-dudresnayi_contig10393:10240..102611690556798.7894711-UTR-D-dudresnayi_contig10393:10240..10261Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10393 10241..10261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10393.421.1

>prot_D-dudresnayi_contig10393.421.1 ID=prot_D-dudresnayi_contig10393.421.1|Name=mRNA_D-dudresnayi_contig10393.421.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=148bp
MTERPVDPMETTMGENQLPKIPQDSVHRGHMESYLAAKASLRTATTIVDY
LAALQDLRMAVKKQQGVLSRAGEDTPLGVPVKWVKQQLPGAERAYQVPTR
HRGKSELAQLWKDMKRDTVSINRRVLKGERGPEAIVGALTRCILAQAR
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mRNA from alignment at D-dudresnayi_contig10393:7637..10261-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10393.421.1 ID=mRNA_D-dudresnayi_contig10393.421.1|Name=mRNA_D-dudresnayi_contig10393.421.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2625bp|location=Sequence derived from alignment at D-dudresnayi_contig10393:7637..10261- (Desmarestia dudresnayi DdudBR16 monoicous)
GTGAGGGCGATCAAAGGGGCGATGACGGAGCGCCCGGTGGACCCTATGGA
GACTACCATGGGGGAGAACCAGCTGCCAAAAATTCCGCAGGACTCGGTCC
ATCGCGGACATATGGAGAGGTGATGACGATGAGTCTCCCCATAGCACGTT
TCTCCTGACCTGCGCAAAAGCACGATGTTATGTTACACGAGCATAAATTG
GATAGCGTTGGCTATACCCTAGCCGAACAACGGCTGTAAAAGTTGTTGTC
AAACGTGCACGTAAAAGTCTCAAAAGCTGGCTTGTCCACACACGTACATA
TAATTACTCTGAAATGAGCATACGCCAATTGAAATGGTATCGTTTTCCAA
TCGCCCTAAGCACAACAGAGTACAACAACAACACAGCAACAAAAACACAC
CATGTCGACGAGGCACTCACTGTTTTTGTATGAACCTCTGAATAAATGTG
CTCTGAAACGAAAAGCCTTGAACATTGAAAGGGCGACGCTGACGAAAAAA
CAAACAACGCCGTCACTCCCTCCCTCCCTCCCTCCCTCGCTCGCGACAAG
GGGTTGAGCCTCCTCCTCCTCCTCCTCCCCCCCCCCCCCGCGTCCCTCCT
CCCCTGCACGATGTGCTTTTATCATCTCCTCGCGGTCTTACTCGTGCATC
CCTCGCGGTTCTTATATAGCGTAACAAGTCCTCTCGTGCGTAAGCCTTTA
AATGTTGCGCTGGCTGCGTTTCTGTCAAGCTCGCGTACGTACCCCGAGGG
GTGGGGTGTACAGTGCATACCCCAGTCTCAAAACTCTGTAAACGTGGCAG
CTTCGTTAGCTAATTTTGGACACGAGCAATGGGGGCGCCGCGAAACACGG
ATCCGACGCGCACATACAAGACAATGGGTGGATTCCCTTCGGTGCAGAGC
TGGTCGCTCGTTGCGGCACTAGTCTACGCTATCATAGTCTACTGTGGCAT
CCCCCGTCGTCGGGCGGGAGCGAACAAACAAAGTGCGCCAGCGATGATGT
TCTATTTCCTTGGACAGGATAAGCCAACTTCACTGCAAAAACCCGTGCCA
CATGCTATGCTAATTGTCACAACTCCACCTCCTTTCAGAAAAGCTCCACG
AAATTACGTGGGGTACACGTATACAATGTTATTGTTAATAAAATTGTTGT
TACCGTTGCAAACCGGCGTTTTTCATTAAACATACCCACGTGTATCGCTC
ATTTCCTGGTGCATCCCGTAGCACACACACTTGCGTGACCTGATACGCGA
ACCTTTCGCCACAAAACACGCAACCCGTCCCCGTCCCCTTCGCACATTTG
TAAATTGCAGCTACCTCGCCGCGAAGGCATCCCTCCGAACGGCAACAACC
ATTGTTGACTACCTCGCGGCTCTCCAGGACTTGAGGATGGCGGTAAAAAA
ACAGCAGGGCGTGCTTAGTAGAGCCGGTGAGGACACGCCATTGGGAGTTC
CAGTGAAGTGGGTGAAGCAGCAGCTTCCGGGCGCGGAGAGGGCTTACCAG
GTGAGAGGAAGGCGTTTTCCAGGGGGGCGATGAAGGGTTTTGCTGCAGTG
GAGGATGCCGTGTGGTATGTTATCGCGAGGGGTGTAGCACGAGGGTGGTA
TACATACGGTGTGTCGCGCGGTATGGTACGCGCCAGGGTCTGTATACATT
TTCTATCGGCATCAAAATTCGATGAAAATCCAAGGCATTTACCGGGGGGG
GACAGAAAGCAAGACAACCCCTGCGGCCACGGCTTGCTCAGACAGGCGCG
CTGAGGGATGGGCTGGGAAGTTGAAGCGGTGGATACAAAAAAAGTCGCAG
GTGTACCTGGTACACAACGACTTTTATTTTCCCGGTCTATCATGGATTAA
ACAAGTACAAATAGTACTGCGGGTGCCGTTTAGCGATGCCGACTTATCTA
GAGACCTAATGTACCGGGTACGGTAGTTAATGGGTTATCGTATCTCGAGG
CGGCCGCCCGTCACGGTGACAATCTTGTCGAGATCGCCACCGTCGTGTCG
GCGGGGGAAGAGAACAACAATTCGCGGCGCACAGGGCATGGTCGATCGAT
ACTCAAAAAGCCATGATTGATTCAGGCTGCCATTAGTGAGGGTCTTCAGT
TGACCTCGTGATGTGCAGCGCCTGGTGCTACTCGTGCGTACGCGAATAAT
ACCCCTCATATGGAAACATCGCTCGTGTCAATCTCGCGCGCGGATACACG
ACTCTGCCCGGCGACCAAAGCTTTCGTTCGCGTTGGCAATGTACTGTACT
GTACTGCATTGCGCAAGGTCGGCGGTATAGTCTATGACCATACTTCTCAA
TAAATAAAAAACGCTGATAAACAAATGTCAAAAGATGACATGCATGCAAG
ACATGAACAAACAAATAAAAATGCGTATTATAATGAATGTGTCGCGTTCG
CCTATCTGTGATAAGGTATCCTCAATCGATGTTCTGTCTCAACTCGGTGT
GGAAAAATACAAATACAAGGTTCCCACGAGACATCGCGGGAAGTCTGAGC
TCGCCCAGCTGTGGAAAGACATGAAGCGAGACACGGTGTCGATTAACAGG
AGAGTGCTCAAAGGAGAGAGAGGGCCGGAGGCTATCGTCGGCGCCTTAAC
GCGGTGCATTCTCGCACAGGCAAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10393:7637..10261-

>mRNA_D-dudresnayi_contig10393.421.1 ID=mRNA_D-dudresnayi_contig10393.421.1|Name=mRNA_D-dudresnayi_contig10393.421.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at D-dudresnayi_contig10393:7637..10261- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACGGAGCGCCCGGTGGACCCTATGGAGACTACCATGGGGGAGAACCA
GCTGCCAAAAATTCCGCAGGACTCGGTCCATCGCGGACATATGGAGAGAT
GACGGAGCGCCCGGTGGACCCTATGGAGACTACCATGGGGGAGAACCAGC
TGCCAAAAATTCCGCAGGACTCGGTCCATCGCGGACATATGGAGAGCTAC
CTCGCCGCGAAGGCATCCCTCCGAACGGCAACAACCATTGTTGACTACCT
CGCGGCTCTCCAGGACTTGAGGATGGCGGTAAAAAAACAGCAGGGCGTGC
TTAGTAGAGCCGGTGAGGACACGCCATTGGGAGTTCCAGTGAAGTGGGTG
AAGCAGCAGCTTCCGGGCGCGGAGAGGGCTTACCAGCTACCTCGCCGCGA
AGGCATCCCTCCGAACGGCAACAACCATTGTTGACTACCTCGCGGCTCTC
CAGGACTTGAGGATGGCGGTAAAAAAACAGCAGGGCGTGCTTAGTAGAGC
CGGTGAGGACACGCCATTGGGAGTTCCAGTGAAGTGGGTGAAGCAGCAGC
TTCCGGGCGCGGAGAGGGCTTACCAGGTTCCCACGAGACATCGCGGGAAG
TCTGAGCTCGCCCAGCTGTGGAAAGACATGAAGCGAGACACGGTGTCGAT
TAACAGGAGAGTGCTCAAAGGAGAGAGAGGGCCGGAGGCTATCGTCGGCG
CCTTAACGCGGTGCATTCTCGCACAGGCAAGGGTTCCCACGAGACATCGC
GGGAAGTCTGAGCTCGCCCAGCTGTGGAAAGACATGAAGCGAGACACGGT
GTCGATTAACAGGAGAGTGCTCAAAGGAGAGAGAGGGCCGGAGGCTATCG
TCGGCGCCTTAACGCGGTGCATTCTCGCACAGGCAAGG
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