mRNA_D-dudresnayi_contig10381.411.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10381.411.1
Unique NamemRNA_D-dudresnayi_contig10381.411.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10381.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10381contigD-dudresnayi_contig10381:4843..5897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size548
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.800949-CDS-D-dudresnayi_contig10381:4842..49381622927537.800949-CDS-D-dudresnayi_contig10381:4842..4938Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10381 4843..4938 +
1690556798.4021344-CDS-D-dudresnayi_contig10381:4842..49381690556798.4021344-CDS-D-dudresnayi_contig10381:4842..4938Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10381 4843..4938 +
1622927537.8131058-CDS-D-dudresnayi_contig10381:5447..58971622927537.8131058-CDS-D-dudresnayi_contig10381:5447..5897Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10381 5448..5897 +
1690556798.4096713-CDS-D-dudresnayi_contig10381:5447..58971690556798.4096713-CDS-D-dudresnayi_contig10381:5447..5897Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10381 5448..5897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10381.411.1prot_D-dudresnayi_contig10381.411.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10381 4843..5897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10381.411.1

>prot_D-dudresnayi_contig10381.411.1 ID=prot_D-dudresnayi_contig10381.411.1|Name=mRNA_D-dudresnayi_contig10381.411.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=182bp
ALTRGDCAPFTPTPPAAAAANPSTANLNVSSQRDLLLKREHNGRRGVVSR
SSSDPPVLALPSPLSNNSTTADCGPLLVSPCATGSTSSVLVGPNTTTPGR
TPRTPVFAMPADTKGEENQSPAVDSAAVMEEAQDEERGFQQPPNLVQTHA
RNPNNAGCSNPFQEAVQPCNIINLKNPSPPAV
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mRNA from alignment at D-dudresnayi_contig10381:4843..5897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10381.411.1 ID=mRNA_D-dudresnayi_contig10381.411.1|Name=mRNA_D-dudresnayi_contig10381.411.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1055bp|location=Sequence derived from alignment at D-dudresnayi_contig10381:4843..5897+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCTCTCACCCGAGGGGACTGTGCGCCTTTCACCCCGACCCCCCCGGCGGC
CGCCGCAGCAAACCCTAGTACAGCAAACCTCAACGTTTCCAGCCAGGTTG
GTGCGCTTGTTCTTCATCACGGGTGTTTTGTTTTTTCCTCTTTTTTCGTG
CTGTGGGAACCGTCATGCCCAGAGAGCACCTGTCCTGTCCTGTCCTGTCC
TGTCCTGTCCTGTCCTGTCCTGTCCTGTCCTGTATTGTCATTTCATGTCA
TGTCACGTCCTGTGGGTAGCGTAAACAATGGTTGGTTGCTTCGTTGGTTG
GTTGGTGAGCGTGATACCACGCGTGTGGGATAGTACAGCAGTGAAGTGAC
GCATGATAATCTCGGTCGTGCTAGAAACGTGCGGCCGGCGATGTTGTTTA
TATTTGCCCTTTGTCCCTTACGCTTTGAGCACGCACCGTGCGATGAGGAC
CCTAACCCTAACCCTAACACCGTGCGATGAGGGTTAAGATAAGGGTTAGG
GTGAGGCTTCGAGGTCCTCCTATGGTACACACTCTGACCCTAATCGTAAC
CCACCGCGTCTGCCCTAACGTGTCGTTGACTACATACACATATGTACGGC
GCAAGCGTGATTTGTTGCTGAAACGAGAGCATAATGGACGAAGGGGTGTA
GTATCGCGAAGCTCTTCGGACCCCCCCGTGCTGGCATTGCCTTCACCTCT
CTCCAACAACTCCACCACCGCCGACTGCGGCCCCCTCTTAGTATCGCCGT
GCGCAACCGGCTCGACGTCGTCTGTCTTGGTGGGACCCAACACCACCACC
CCGGGGAGAACACCCCGCACCCCCGTGTTCGCAATGCCTGCGGACACTAA
AGGCGAGGAAAACCAATCCCCTGCCGTCGATTCAGCGGCGGTGATGGAAG
AGGCTCAGGACGAAGAGCGGGGATTCCAGCAGCCTCCAAATCTAGTGCAA
ACCCATGCTCGGAATCCCAACAACGCTGGCTGTAGCAATCCTTTCCAGGA
AGCCGTGCAACCCTGCAATATTATTAACCTGAAAAATCCGTCGCCGCCAG
CTGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10381:4843..5897+

>mRNA_D-dudresnayi_contig10381.411.1 ID=mRNA_D-dudresnayi_contig10381.411.1|Name=mRNA_D-dudresnayi_contig10381.411.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at D-dudresnayi_contig10381:4843..5897+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCTCTCACCCGAGGGGACTGTGCGCCTTTCACCCCGACCCCCCCGGCGGC
CGCCGCAGCAAACCCTAGTACAGCAAACCTCAACGTTTCCAGCCAGGCTC
TCACCCGAGGGGACTGTGCGCCTTTCACCCCGACCCCCCCGGCGGCCGCC
GCAGCAAACCCTAGTACAGCAAACCTCAACGTTTCCAGCCAGCGTGATTT
GTTGCTGAAACGAGAGCATAATGGACGAAGGGGTGTAGTATCGCGAAGCT
CTTCGGACCCCCCCGTGCTGGCATTGCCTTCACCTCTCTCCAACAACTCC
ACCACCGCCGACTGCGGCCCCCTCTTAGTATCGCCGTGCGCAACCGGCTC
GACGTCGTCTGTCTTGGTGGGACCCAACACCACCACCCCGGGGAGAACAC
CCCGCACCCCCGTGTTCGCAATGCCTGCGGACACTAAAGGCGAGGAAAAC
CAATCCCCTGCCGTCGATTCAGCGGCGGTGATGGAAGAGGCTCAGGACGA
AGAGCGGGGATTCCAGCAGCCTCCAAATCTAGTGCAAACCCATGCTCGGA
ATCCCAACAACGCTGGCTGTAGCAATCCTTTCCAGGAAGCCGTGCAACCC
TGCAATATTATTAACCTGAAAAATCCGTCGCCGCCAGCTGTGCGTGATTT
GTTGCTGAAACGAGAGCATAATGGACGAAGGGGTGTAGTATCGCGAAGCT
CTTCGGACCCCCCCGTGCTGGCATTGCCTTCACCTCTCTCCAACAACTCC
ACCACCGCCGACTGCGGCCCCCTCTTAGTATCGCCGTGCGCAACCGGCTC
GACGTCGTCTGTCTTGGTGGGACCCAACACCACCACCCCGGGGAGAACAC
CCCGCACCCCCGTGTTCGCAATGCCTGCGGACACTAAAGGCGAGGAAAAC
CAATCCCCTGCCGTCGATTCAGCGGCGGTGATGGAAGAGGCTCAGGACGA
AGAGCGGGGATTCCAGCAGCCTCCAAATCTAGTGCAAACCCATGCTCGGA
ATCCCAACAACGCTGGCTGTAGCAATCCTTTCCAGGAAGCCGTGCAACCC
TGCAATATTATTAACCTGAAAAATCCGTCGCCGCCAGCTGTG
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