mRNA_D-dudresnayi_contig10381.410.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10381.410.1
Unique NamemRNA_D-dudresnayi_contig10381.410.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10381.410.1 vs. uniprot
Match: D7G1Q5_ECTSI (Serine/threonine-specific protein kinase-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Q5_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 8.830e-7
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   31 AAPTSAPPELDHPRRHSFRAVELTPTKAELAHSAAVVRSAMEQERVLCKQKELLERRTGEAEERRRGAEE 240
            AA  +  PELDHP   S R+ +L   KA LA +AA++RS  E+ER    Q++LLERR GEA  RR+GAEE
Sbjct:  472 AASAATDPELDHPGLQSKRSADL---KAALAANAAMIRSMQEEERAFSVQRDLLERRRGEAGARRKGAEE 538
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10381.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Q5_ECTSI8.830e-752.86Serine/threonine-specific protein kinase-like prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10381contigD-dudresnayi_contig10381:2378..3641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size245
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.0692823-CDS-D-dudresnayi_contig10381:2377..24341622927538.0692823-CDS-D-dudresnayi_contig10381:2377..2434Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10381 2378..2434 +
1690556798.4175792-CDS-D-dudresnayi_contig10381:2377..24341690556798.4175792-CDS-D-dudresnayi_contig10381:2377..2434Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10381 2378..2434 +
1622927538.082471-CDS-D-dudresnayi_contig10381:3454..36401622927538.082471-CDS-D-dudresnayi_contig10381:3454..3640Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10381 3455..3640 +
1690556798.4250581-CDS-D-dudresnayi_contig10381:3454..36401690556798.4250581-CDS-D-dudresnayi_contig10381:3454..3640Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10381 3455..3640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10381.410.1prot_D-dudresnayi_contig10381.410.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10381 2378..3640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10381.410.1

>prot_D-dudresnayi_contig10381.410.1 ID=prot_D-dudresnayi_contig10381.410.1|Name=mRNA_D-dudresnayi_contig10381.410.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=81bp
AAGVTGTAGTAAPTSAPPELDHPRRHSFRAVELTPTKAELAHSAAVVRSA
MEQERVLCKQKELLERRTGEAEERRRGAEEQ
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mRNA from alignment at D-dudresnayi_contig10381:2378..3641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10381.410.1 ID=mRNA_D-dudresnayi_contig10381.410.1|Name=mRNA_D-dudresnayi_contig10381.410.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1264bp|location=Sequence derived from alignment at D-dudresnayi_contig10381:2378..3641+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCAGCGGGGGTAACAGGAACGGCAGGGACGGCGGCACCAACTTCTGCACC
ACCGGAGGTACAGTACGGTACGGTACGGTTCGGTACGGTACAGTAGTAGC
ACCGGATCGGGGATGCCATACTGTAGCACAAGCGTGGAGTAGGACAGAGG
ATATTATTATTTTCTTCAGTGGTAAACGCGTGAAATCTTTCCCGAACCAG
CCCTCGCGTTAGGTTTAGGGTCAGGATTGGCTGGATTTGTTCTAGGGCAG
GCGAGGCCTACACGTCAAGAGAGTCGCGACGACGCCCAGGCTGGACGGCA
CTACCCAAACCAATCACAAAAAAGTTTAGTAGTAGAAATGCCGCCACGTA
ACCAATATTGTTTTACGTGCGCTGTCTGCTTTACGCGCCGCGTACACGAT
GTGATTCTGCCGTAGCCACGGCGAACGTGCTAGCTGTCAGTCAAATACAC
CGGTCGGTCGGTTGGTCGGTCGGTCGGTCGATCGGTCGGTCGCCACCGCC
ACAATCGTTGGTGACATCGCCCGCTAACCCTAACCCTATCCCATATCCTA
ACCCCTACTCCCTACTCACGACGTGCCATGGTACTGTCCATGTGCCGAAG
GGGCGATGGGGCATAGCGTTGTGCTATGATCAGGTTACGATAGGGTTTAG
TAAATCTTGATGCGGCGTTCGGGCTAGGGTTATTACTATGACAGGAAGGT
GAACGTTACGCCCTTAACCTTGCAAGCACCCAAAAACAAGAGCAAACGGC
GTGGCGATCGACTTGTTTTTTGCTGCGACGGTTCGTGTGATGGGACCCAC
GTTCTCCCGCCCCTCGTGTTTCGTGATCTTTGAAAGCAGCTCTGCGGACA
GAGGAATCAACGAAGCAATCAAGCTACGCCGTTAATCCCACCCTCCCACC
CTCTTCGCCTTACGATATGTGAAGTAGCCAACCCATTCACTCACCTAAGC
CTCTTTCCGTCGAAACCCCGGTGCCTTTTGCCGTGGCCACCCCGGTGCCA
CCGTTTGCTTTTTGTAAACTCTCGGACCGTGCCGGCAATGGATAATCATG
GTTGGTGGTCGTTGGGGGACGGGGCAGCTGGACCATCCGAGACGTCACAG
CTTTCGCGCGGTTGAGCTGACCCCCACGAAGGCAGAGCTGGCGCACAGTG
CTGCCGTGGTGAGGTCTGCCATGGAGCAAGAGCGAGTGCTGTGCAAACAA
AAAGAGTTGCTAGAGAGGCGGACGGGGGAGGCCGAAGAGCGCCGGAGAGG
GGCCGAGGAGCAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10381:2378..3641+

>mRNA_D-dudresnayi_contig10381.410.1 ID=mRNA_D-dudresnayi_contig10381.410.1|Name=mRNA_D-dudresnayi_contig10381.410.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at D-dudresnayi_contig10381:2378..3641+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCAGCGGGGGTAACAGGAACGGCAGGGACGGCGGCACCAACTTCTGCACC
ACCGGAGGCAGCGGGGGTAACAGGAACGGCAGGGACGGCGGCACCAACTT
CTGCACCACCGGAGCTGGACCATCCGAGACGTCACAGCTTTCGCGCGGTT
GAGCTGACCCCCACGAAGGCAGAGCTGGCGCACAGTGCTGCCGTGGTGAG
GTCTGCCATGGAGCAAGAGCGAGTGCTGTGCAAACAAAAAGAGTTGCTAG
AGAGGCGGACGGGGGAGGCCGAAGAGCGCCGGAGAGGGGCCGAGGAGCAG
CTGGACCATCCGAGACGTCACAGCTTTCGCGCGGTTGAGCTGACCCCCAC
GAAGGCAGAGCTGGCGCACAGTGCTGCCGTGGTGAGGTCTGCCATGGAGC
AAGAGCGAGTGCTGTGCAAACAAAAAGAGTTGCTAGAGAGGCGGACGGGG
GAGGCCGAAGAGCGCCGGAGAGGGGCCGAGGAGCAG
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