mRNA_D-dudresnayi_contig10380.408.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10380.408.1
Unique NamemRNA_D-dudresnayi_contig10380.408.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10380.408.1 vs. uniprot
Match: D8LTW4_ECTSI (Fructose-bisphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW4_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 5.240e-8
Identity = 75/98 (76.53%), Postives = 78/98 (79.59%), Query Frame = 2 
Query:  395 MIGPAVWAAFKEEQKGVTRALLGLPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXER----------RTTLGTFMMETRSRSPDMEV 658
            +IGPAVWAAFKEEQKGVTR LLG  D+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            RTTLGTFM+ETRSRSPDME 
Sbjct:   59 LIGPAVWAAFKEEQKGVTRTLLGFDDDNAFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPVPRTTLGTFMVETRSRSPDMEA 156
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BLAST of mRNA_D-dudresnayi_contig10380.408.1 vs. uniprot
Match: A0A6H5K7J4_9PHAE (Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.630e-7
Identity = 39/97 (40.21%), Postives = 42/97 (43.30%), Query Frame = 2 
Query:  395 MIGPAVWAAFKEEQKGVTRALLGLPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXER---------RTTLGTFMMETRSRSPDMEV 658
            +IGPAVWAAFKEEQKGVTR LLG  D+                                       +          R TLGTFM ETRSRSPDME 
Sbjct: 1306 LIGPAVWAAFKEEQKGVTRTLLGFDDDNASGKEADGKAAPPPERAGEESGVENETMEEELRRWRRQQEEQLRQRPVPRMTLGTFMAETRSRSPDMEA 1402
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10380.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTW4_ECTSI5.240e-876.53Fructose-bisphosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7J4_9PHAE1.630e-740.21Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10380contigD-dudresnayi_contig10380:6571..10911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog2880.D8LTW4
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
EggNOG free text desc.fructose 1,6-bisphosphate 1-phosphatase activity
EggNOG OGsCOG0158@1,KOG1458@2759
EC3.1.3.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categorychloroplast
Exons3
Model size673
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10380.408.1prot_D-dudresnayi_contig10380.408.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10380 6659..10911 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.4342089-UTR-D-dudresnayi_contig10380:6570..66581622927537.4342089-UTR-D-dudresnayi_contig10380:6570..6658Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10380 6571..6658 +
1690556798.2994807-UTR-D-dudresnayi_contig10380:6570..66581690556798.2994807-UTR-D-dudresnayi_contig10380:6570..6658Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10380 6571..6658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.4456868-CDS-D-dudresnayi_contig10380:6658..67841622927537.4456868-CDS-D-dudresnayi_contig10380:6658..6784Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 6659..6784 +
1690556798.312109-CDS-D-dudresnayi_contig10380:6658..67841690556798.312109-CDS-D-dudresnayi_contig10380:6658..6784Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 6659..6784 +
1622927537.461212-CDS-D-dudresnayi_contig10380:8957..91821622927537.461212-CDS-D-dudresnayi_contig10380:8957..9182Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 8958..9182 +
1690556798.3206143-CDS-D-dudresnayi_contig10380:8957..91821690556798.3206143-CDS-D-dudresnayi_contig10380:8957..9182Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 8958..9182 +
1622927537.656906-CDS-D-dudresnayi_contig10380:10677..109111622927537.656906-CDS-D-dudresnayi_contig10380:10677..10911Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 10678..10911 +
1690556798.3300586-CDS-D-dudresnayi_contig10380:10677..109111690556798.3300586-CDS-D-dudresnayi_contig10380:10677..10911Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 10678..10911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10380.408.1

>prot_D-dudresnayi_contig10380.408.1 ID=prot_D-dudresnayi_contig10380.408.1|Name=mRNA_D-dudresnayi_contig10380.408.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=195bp
MVMTGGYIAVFVSVTAMLMSPTMQAFVVRSAAPTSTRRQVRRISPLPYMT
ASSQQNHNHHRHEARHSSISSALPVVDATGAAAPPANMSVANQRSRKRRR
RPMIGPAVWAAFKEEQKGVTRALLGLPDEEEGGNTTGATSGGTAGRHQDD
EENHKQKKKKEREQKRRPERRTTLGTFMMETRSRSPDMEVGDDL*
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mRNA from alignment at D-dudresnayi_contig10380:6571..10911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10380.408.1 ID=mRNA_D-dudresnayi_contig10380.408.1|Name=mRNA_D-dudresnayi_contig10380.408.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4341bp|location=Sequence derived from alignment at D-dudresnayi_contig10380:6571..10911+ (Desmarestia dudresnayi DdudBR16 monoicous)
CACAAAGATAGATCCATCCGTGGTGCTGTGGCCGAGATACCTGACTCCCG
GCTAGGCCAGCCGTGCGGTGCGCGGTGCGGTGCTCAAGATGGTGATGACT
GGTGGATATATTGCAGTTTTTGTTTCTGTGACAGCGATGCTGATGAGCCC
AACCATGCAAGCTTTCGTTGTGCGTTCCGCTGCACCTACGAGTACTAGGC
GTCAAGTTCGGAGGGTAAGCTTCGCGCGCCTTACAAATGTGTACAAGGTT
GCATACTATAATACTGTTATTGTACTATGATGCAGTGGTTGTGTGCTGTC
TGGTGGTATAAGTGTATGCATAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGATATGTGTACTCGTATAGTATGATACAGTAGTAGT
GGTAGTATCTCAAAATAGTATTTCGAGTGAAAATACTTGTACCGCACCTG
AACCTCTCCAATGCCGAGTAGTTTATAGACGTGTTGCGCCGCATTTTTTT
TTTCGGGCCCTTCAGCTGCCTTGTCTCAACGCAAAGGAAAACCACTTGCA
GCTTCTTTCAGCTGGCCTTGCCAGACAGAATTCAAACCCAGCACATTGTG
TGCAGTGGACGAAGAGCTACGCATTCGAGCTACTCGTATGCTGGCCTTCG
CCTTGACACTCGTACAGTGTAGTTCTTGTTACACTCGTAGTATAGGTACA
GTAGTACGTACGTACCTGGTATATGTCTGATGACCCGAGGCCAAACGCCA
ACTTGCCTCGCGGTCGATGGCGAATCGGTTGGGATATTAATAGCGGGCTC
TTTTCTTTTCTTTTCTTTTCTTTTTTATCCATCACTTCTACTTCCCAGTC
CGCAGCCCACGGGAGCTCTTCTACTCGTCGCTCCGCGCAGGTGTCTACCC
TTCCCCCCCCGGTATATGCGTCGGTTTTTGTCGGGCACAAGGTGCAGCAT
TTCCATGGGCTCGTCGATTTTCATCGAAGTGTGCTTTTACTCGCGCTCTC
TCACGCTTTCCGCGACGGAAGATGGCACAGAAAAGTGCCATTTTGTTTTT
CATCGGGATTCGAACCGCAAACTTCCGCCAACAGGGGTGGTAATAAAAAA
ACCTGGCCTACGACCACCCCCTGTCATTTCAAGTCGCATTGTAAAAGGCG
TTGCGAAAGCTCTGCATGCCGCACTACCATGTGCCTATATCATACCTACA
GAGGTCAACTTACAGGACATCTATCGATGGTGATAGATTGACCCATGAAC
GAACGTGAACATTCGCACTCACATCCACTTTCTGGTTACAGACGTCGACC
TTTGTATAAATATGTATGGCGCCACGCAAAACGTTGTCGGTACAAACAAA
TTTTAGATATAGATCTATCGTACGGACTTAGAGCTAGAGCTATGTACCAG
GCAGGGTATATACGATATAGCTCTCTTCGTATGTGCCTATTAATACTACT
GTTGTACTGTTGAGCATCTCCAGAGCAAAGCGTATTCTTGATACGTTGCA
TTACCTTGGCCATATACGAAGGTGCTCTGGGTTGGAGGTGGAGAGCAGAC
AACGGTATGATAGTAGTATTCCTCTATCGTATCCGAGGGGGCTCATGTTT
TTTTTTTACGTCATAGCTTCGCCCCCCCGTTAAGAAGAGGTGCAGTAGGA
ATGAAAACGTATTTTTGCGCGGCCCCACAATTCGATGAAAGTCGACGAGG
GAAGAAAGTGCTGCACTCTTCTCGCGACAAAAATGTAGGCACGTACCGTA
GTAGGAAGGCGGGAGGAGCGCCTGCTTTGTGACCCCGGATCTGATTTACG
AAGAAAGATGGAGCTACAGTAGAGAAAGAATAGGGCGAAGATAATAAATG
GGACGAAAAAAAAAAAATGCTAAAACTGTAATTTCGTGTAGGGGACCTGA
ACTTACCAGAAAGAAGAAAGATGTATACGAGTAGTCGGGAGGCGGGGGAA
GAAGATACACGGTAGTTGTGCCCTTGTGGGCAAGGTCGAAGAGAGTAGAA
CTCACATGGTGGGAGAATGTAAAGTATACAATGAGGAACGAGATGTGTTG
GAGGAGGAGATGAGGAAAATAGACGAATGTCACGTAGAGAAGTTTGATAC
ACTACGAGTAGATAATGGCGAGAAGACGATCGCTATCCTAGGAGATAGAT
GGTGGCCACAAAAAGCGAAACAGGAAGGGGAAAAGATAAGCAAACATTTT
TTGTGTTAAGATATGGAAAAAACGTACAGAGGCGCCTACATGTTGGAGGT
GTCTCTATTAGGAATAGGAACGGTGCTCCGTCTCGAATAGGATACGTGGT
CAATGTTCAAACGGCTTAAGGCAAGCAATACGTGATACCCCGCCCCCCAC
CCCCCCCCCCCCCGGGCGTGCCCCTGCCTCGTCGCAGATATCTCCATTGC
CATACATGACGGCCTCGTCTCAACAAAACCACAACCACCACCGACACGAA
GCAAGACACAGCAGCATCAGCAGCGCGTTGCCCGTCGTAGATGCCACGGG
AGCCGCGGCACCGCCGGCGAACATGTCGGTGGCCAATCAGCGCTCTAGAA
AACGTCGCAGGCGCCCGATGATTGGTCCTGCCGTGTGGGCGGCGTTTAAG
GAAGAGCAGAAGGTTAGAATAAGCAAAAGATGCAGAAATATGAAGAAAGA
AAAAGCACGCCTTTTCGTTAGGGTGACGGCCGCGGTGACGACGTCGTCGT
ATTTTTAGTTTATTTTTGTTTCGTTTTTTTTTATCCGAGCCAGGGTATGT
CTCAGCACTTTTTTCCCCGCCGATCGACTTCAAATCCATATTTCTTCTGT
GCTGATTGGCCGATGCTCTGAACTCTTATTTAAAGTTCCGAGAATACGAG
AACAAGTCGGTTTTCACCCAAAAGCAATATTTCGCGAGCCCAACGTTGGA
ATTTCCTTTCATTTTTTAAGAGGAACAAAACAGGACTGTACAGCAAGTTG
CTGCGTTGGTTTTGTGCGAGTGCCAGAATTAAGAGGCAGAAAAAGTGGTG
CTCAGAATAGTGGTTGTAGGAGGTGTACCTACTCTTGCGTCGCGACGGCG
ACTCATAGACAGCCCACGGAGACATACAGGCTCAGTTAAAACAGTCAGGC
AGGAGATCTCCGCGAAACAAAGATAAAAACATAATCGAACTACTAAAATA
AAAAGGCCGGAGATCTCCGCAACACAAAGATAAAAAAAATATACATTTAT
CAAAAAAAAATCGAAATTTTTCCCGCAGTTGCCCTCTGTGTCGTATAGAT
TTAGGAGACTCTCGGGAATTAATTGCAGAGTTGTACCAACCGAGCGTATT
CCGAAGCAAAGATACTAATAAGTAAGTCCATGTCGTATCACGGGGTATGC
GTGAGACATACCTGCTGGTATGCATACCATACTACCAATTTTACTATTTT
GTATTTATTATTTTTTATGTATTGCGTCGCTACGCTCGCACGTCGACCAG
AAAACGATGATGCAAAAACGTGACGGTTTTGTTCTACTACTGTAAAGTAT
AAGGGGAAAGGCAAGCCGTCGGTCATATATAATGACGCTTGCACCTCTCC
TGCGATTAAAAAAATATATCGGGCAAGTGTCGTGGGGGGGAGAGGACGGA
GGGGGGGGGGGGGTTCTCATTTGTTGCCTGCCTTAGTCATTTGACCATTG
ACCACGCATCCATTTCGAGGCGGAGCACCGTTCCTACTCCTAATACTTGG
TAGACACACCTCCAACATTTGGGCGCTCTATACGTTTTTTTCATATCTCA
CATAAAAACCTTTTGCTTTTCTTATCCCCTTCCTGTTTCGCCTTTTGTGG
TCGCCATCTATCTCCCAGGATAGCGATCGTTTTCACCGGGGCGGGGAGGG
GGGGGGGGGTGAACACTTGTGATCGCGGTAAATTTTTTACCGGGCGTTAC
AATCGCAGTTTGTAACACACCACAAAACGAAGGAAAATATGATACTTCGT
ATATACATAGAATAGCTCGTATCGTAGACGACGCGAAGATTGAAAAAAGC
GTCAACTCTTTTTTTTCCTTTGTTCTTCTGCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCTGTTCTGTTGTGTTTTTTTTTTATGTTTTGACTGATGAC
ACACAAGGGGGTTACCCGTGCTTTGCTGGGTCTTCCCGATGAAGAGGAAG
GGGGTAATACGACGGGTGCGACGTCGGGAGGGACCGCAGGAAGACACCAG
GACGACGAGGAGAACCACAAGCAGAAGAAGAAGAAGGAGAGGGAGCAGAA
GCGGCGACCGGAGCGAAGAACGACGCTCGGAACGTTCATGATGGAGACGC
GTTCTAGGAGCCCCGATATGGAGGTGGGCGACGATCTCTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10380:6571..10911+

>mRNA_D-dudresnayi_contig10380.408.1 ID=mRNA_D-dudresnayi_contig10380.408.1|Name=mRNA_D-dudresnayi_contig10380.408.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at D-dudresnayi_contig10380:6571..10911+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGATGACTGGTGGATATATTGCAGTTTTTGTTTCTGTGACAGCGAT
GCTGATGAGCCCAACCATGCAAGCTTTCGTTGTGCGTTCCGCTGCACCTA
CGAGTACTAGGCGTCAAGTTCGGAGGATGGTGATGACTGGTGGATATATT
GCAGTTTTTGTTTCTGTGACAGCGATGCTGATGAGCCCAACCATGCAAGC
TTTCGTTGTGCGTTCCGCTGCACCTACGAGTACTAGGCGTCAAGTTCGGA
GGATATCTCCATTGCCATACATGACGGCCTCGTCTCAACAAAACCACAAC
CACCACCGACACGAAGCAAGACACAGCAGCATCAGCAGCGCGTTGCCCGT
CGTAGATGCCACGGGAGCCGCGGCACCGCCGGCGAACATGTCGGTGGCCA
ATCAGCGCTCTAGAAAACGTCGCAGGCGCCCGATGATTGGTCCTGCCGTG
TGGGCGGCGTTTAAGGAAGAGCAGAAGATATCTCCATTGCCATACATGAC
GGCCTCGTCTCAACAAAACCACAACCACCACCGACACGAAGCAAGACACA
GCAGCATCAGCAGCGCGTTGCCCGTCGTAGATGCCACGGGAGCCGCGGCA
CCGCCGGCGAACATGTCGGTGGCCAATCAGCGCTCTAGAAAACGTCGCAG
GCGCCCGATGATTGGTCCTGCCGTGTGGGCGGCGTTTAAGGAAGAGCAGA
AGGGGGTTACCCGTGCTTTGCTGGGTCTTCCCGATGAAGAGGAAGGGGGT
AATACGACGGGTGCGACGTCGGGAGGGACCGCAGGAAGACACCAGGACGA
CGAGGAGAACCACAAGCAGAAGAAGAAGAAGGAGAGGGAGCAGAAGCGGC
GACCGGAGCGAAGAACGACGCTCGGAACGTTCATGATGGAGACGCGTTCT
AGGAGCCCCGATATGGAGGTGGGCGACGATCTCTGAGGGGTTACCCGTGC
TTTGCTGGGTCTTCCCGATGAAGAGGAAGGGGGTAATACGACGGGTGCGA
CGTCGGGAGGGACCGCAGGAAGACACCAGGACGACGAGGAGAACCACAAG
CAGAAGAAGAAGAAGGAGAGGGAGCAGAAGCGGCGACCGGAGCGAAGAAC
GACGCTCGGAACGTTCATGATGGAGACGCGTTCTAGGAGCCCCGATATGG
AGGTGGGCGACGATCTCTGA
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