mRNA_D-dudresnayi_contig10377.404.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10377.404.1
Unique NamemRNA_D-dudresnayi_contig10377.404.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10377.404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10377contigD-dudresnayi_contig10377:9664..10608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size945
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10377.404.1prot_D-dudresnayi_contig10377.404.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10377 9683..10156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927536.7578158-UTR-D-dudresnayi_contig10377:9663..96821622927536.7578158-UTR-D-dudresnayi_contig10377:9663..9682Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10377 9664..9682 +
1690556798.019486-UTR-D-dudresnayi_contig10377:9663..96821690556798.019486-UTR-D-dudresnayi_contig10377:9663..9682Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10377 9664..9682 +
1622927536.7860086-UTR-D-dudresnayi_contig10377:10156..106081622927536.7860086-UTR-D-dudresnayi_contig10377:10156..10608Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10377 10157..10608 +
1690556798.0390162-UTR-D-dudresnayi_contig10377:10156..106081690556798.0390162-UTR-D-dudresnayi_contig10377:10156..10608Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10377 10157..10608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927536.76946-CDS-D-dudresnayi_contig10377:9682..101561622927536.76946-CDS-D-dudresnayi_contig10377:9682..10156Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10377 9683..10156 +
1690556798.0292435-CDS-D-dudresnayi_contig10377:9682..101561690556798.0292435-CDS-D-dudresnayi_contig10377:9682..10156Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10377 9683..10156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10377.404.1

>prot_D-dudresnayi_contig10377.404.1 ID=prot_D-dudresnayi_contig10377.404.1|Name=mRNA_D-dudresnayi_contig10377.404.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=158bp
MVATKTKKELFLWGCCCCCFTPTAPRSVRVAENTAKIASPPFYIIQHDAQ
QILQATTPSQWTPQYYWAIPPRASTHVDQLPLFHPIETRPAPRLLVADLL
LLNIYPSFHVVSTTRIAPLLLSSVTLGCLLHSPPFHYCIHCRLVAAVVAQ
CPPPCLS*
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mRNA from alignment at D-dudresnayi_contig10377:9664..10608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10377.404.1 ID=mRNA_D-dudresnayi_contig10377.404.1|Name=mRNA_D-dudresnayi_contig10377.404.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=945bp|location=Sequence derived from alignment at D-dudresnayi_contig10377:9664..10608+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGGCACACGAAAACAATCAATGGTCGCTACTAAAACCAAAAAAGAGCTTT
TCCTATGGGGTTGTTGTTGTTGTTGTTTCACACCTACAGCTCCAAGAAGC
GTCCGTGTCGCAGAGAACACAGCAAAAATTGCATCCCCACCTTTCTATAT
AATACAACACGACGCACAACAAATCCTGCAAGCAACAACCCCCTCCCAAT
GGACACCTCAGTACTACTGGGCAATTCCGCCAAGAGCATCAACGCACGTC
GACCAACTCCCCCTCTTCCACCCGATAGAAACGCGCCCTGCCCCCCGCCT
GCTGGTCGCCGATCTCCTCCTACTTAACATATATCCCTCCTTTCATGTGG
TCTCAACGACCAGGATCGCTCCCCTCTTGCTCTCCTCCGTGACACTGGGC
TGCCTGCTGCACTCGCCGCCCTTCCACTACTGCATACACTGCCGACTAGT
TGCTGCGGTGGTGGCGCAGTGTCCTCCTCCCTGCCTCTCTTAACTCCGTT
GTTCACGCGGCCGGATCCGCTTGACGACCCGCCGCTCGACCGCGCATCCG
ACCCCGAGATATCAATCAATGCCGACGACAACATCCCGCCACCACCACCG
AGGGGGGAGTACCCCCCGCTGGCGTGCCCCCCGCAACTGCGACCACCACC
CGGGACACTCGTGCCATCAACGCCACCATCGCGACTACTGCCGGTGTTCT
CTTTCAAGCGCCCGTTGTTGTGACTGCCGCCGTGGTCACTAGCCTTAACC
CTAGCATCGCGAGGGCGCCTCCTGTCTGCACCTCTGTTGCTCAAAGTCGC
CGCGGCTACCGCAAGACCGGCACGCTTCCCCCCTGCCTCTCCTCTTACAA
AAATCTCCGCCGCACCGCTCGTAGCCTCTATTGCACCAAGCGTCAACAAT
CGGCCGTTTCGTCCTCTTTCTACCCGTCCTTCCCGTATCCCTCCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10377:9664..10608+

>mRNA_D-dudresnayi_contig10377.404.1 ID=mRNA_D-dudresnayi_contig10377.404.1|Name=mRNA_D-dudresnayi_contig10377.404.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at D-dudresnayi_contig10377:9664..10608+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTCGCTACTAAAACCAAAAAAGAGCTTTTCCTATGGGGTTGTTGTTG
TTGTTGTTTCACACCTACAGCTCCAAGAAGCGTCCGTGTCGCAGAGAACA
CAGCAAAAATTGCATCCCCACCTTTCTATATAATACAACACGACGCACAA
CAAATCCTGCAAGCAACAACCCCCTCCCAATGGACACCTCAGTACTACTG
GGCAATTCCGCCAAGAGCATCAACGCACGTCGACCAACTCCCCCTCTTCC
ACCCGATAGAAACGCGCCCTGCCCCCCGCCTGCTGGTCGCCGATCTCCTC
CTACTTAACATATATCCCTCCTTTCATGTGGTCTCAACGACCAGGATCGC
TCCCCTCTTGCTCTCCTCCGTGACACTGGGCTGCCTGCTGCACTCGCCGC
CCTTCCACTACTGCATACACTGCCGACTAGTTGCTGCGGTGGTGGCGCAG
TGTCCTCCTCCCTGCCTCTCTTAAATGGTCGCTACTAAAACCAAAAAAGA
GCTTTTCCTATGGGGTTGTTGTTGTTGTTGTTTCACACCTACAGCTCCAA
GAAGCGTCCGTGTCGCAGAGAACACAGCAAAAATTGCATCCCCACCTTTC
TATATAATACAACACGACGCACAACAAATCCTGCAAGCAACAACCCCCTC
CCAATGGACACCTCAGTACTACTGGGCAATTCCGCCAAGAGCATCAACGC
ACGTCGACCAACTCCCCCTCTTCCACCCGATAGAAACGCGCCCTGCCCCC
CGCCTGCTGGTCGCCGATCTCCTCCTACTTAACATATATCCCTCCTTTCA
TGTGGTCTCAACGACCAGGATCGCTCCCCTCTTGCTCTCCTCCGTGACAC
TGGGCTGCCTGCTGCACTCGCCGCCCTTCCACTACTGCATACACTGCCGA
CTAGTTGCTGCGGTGGTGGCGCAGTGTCCTCCTCCCTGCCTCTCTTAA
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