mRNA_D-dudresnayi_contig1037.399.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1037.399.1
Unique NamemRNA_D-dudresnayi_contig1037.399.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1037.399.1 vs. uniprot
Match: A0A7S3GTF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTF8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.870e-19
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    4 TSTTAIGYLVLIHVQLFEIFPALVILPALVLLAIAHFIIQSSKADAQLKLARLFPSNRKKPATTT 198
            TSTTAIGY++ IHVQL+ IFP LVILPAL++  + HFIIQSSK+DAQLKLARLFP   KK   TT
Sbjct:   50 TSTTAIGYILYIHVQLYAIFPVLVILPALLVFVLVHFIIQSSKSDAQLKLARLFPHTNKKNKVTT 114
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BLAST of mRNA_D-dudresnayi_contig1037.399.1 vs. uniprot
Match: A0A7S3HJ74_9STRA (Hypothetical protein n=6 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ74_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.610e-17
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    4 TSTTAIGYLVLIHVQLFEIFPALVILPALVLLAIAHFIIQSSKADAQLKLARLFPSNRKK 183
            TSTTAIGY+V +HVQL+EIFP LVILP L+LL + HFIIQSSKADAQ+KLARLFP+ + K
Sbjct:  800 TSTTAIGYIVFVHVQLYEIFPVLVILPMLLLLVLVHFIIQSSKADAQIKLARLFPAKKNK 859
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BLAST of mRNA_D-dudresnayi_contig1037.399.1 vs. uniprot
Match: A0A7S3HCH1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCH1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.020e-15
Identity = 62/153 (40.52%), Postives = 85/153 (55.56%), Query Frame = 1 
Query:    1 MTSTTAIGYLVLIHVQLFEIFPALVILPALVLLAIAHFIIQSSKADAQLKLARLFPSNRKKPATTTALAIDATHTHADQVDGAV--NGESKES------DEEVLSA------LDSDDEFGDSPIVIRVPRSAQHKTRRQSISAGLDAIHALQD 417
            M +T A+GY VLIHV+LF IFP LVI+PAL++  I HF IQSSKA+AQLKL ++F     K  T   +  + TH   +  D A   + +S  S      DEEV +A      +D       S +    P    H TRRQS++ G+  ++ALQ+
Sbjct:   62 MCTTAAVGYTVLIHVELFYIFPVLVIVPALIIAVIVHFFIQSSKANAQLKLNKMFAGTPVK-GTKDDMMFEKTHDLEEATDSAELHSQDSTNSVEPFYEDEEVRAADCVSTPIDELHLPAPSALPTFAPAPVGHTTRRQSVAHGIRVLNALQE 213
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BLAST of mRNA_D-dudresnayi_contig1037.399.1 vs. uniprot
Match: A0A7S3GTZ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTZ7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.020e-7
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 MTSTTAIGYLVLIHVQLFEIFPALVILPALVLLAIAHFIIQSSKADAQLKLARLFPSNRK 180
            M +TTA+GY VL+HV L+ +FP LVI+P L++  I HF IQSSKA ++  L ++   ++K
Sbjct:  980 MCTTTAMGYTVLLHVDLYRVFPVLVIIPTLIIAVIVHFFIQSSKASSKRSLEKMLGDDKK 1039
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BLAST of mRNA_D-dudresnayi_contig1037.399.1 vs. uniprot
Match: A0A7S3HC08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC08_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.840e-7
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 MTSTTAIGYLVLIHVQLFEIFPALVILPALVLLAIAHFIIQSSKADAQLKLARLFPSNRKKPAT 192
            M +T +IGY +L+H+ L++IFP L  LP ++++ I HF++QSSKA AQ ++ +L  +    P+T
Sbjct:   10 MVATASIGYTILLHLNLYQIFPLLAFLPLMLVIVIVHFVMQSSKASAQQEINKLLATPPAPPST 73
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BLAST of mRNA_D-dudresnayi_contig1037.399.1 vs. uniprot
Match: A0A7S3M1C7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1C7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.550e-7
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:  103 IAHFIIQSSKADAQLKLARLFPSNRKK------------PATTTALAIDATHTHADQVDGAVNGESKESDEEVLSALD--SDDEFGDSPIVIRVPRSAQHKTRRQSISAGLDAIHAL-QDRVRRGEA 438
            + HF IQSSKADA++KLARLFPS+  K            P  ++     A   HA+Q       ESKE  +   +  D   +D    S    +      H+TRRQSI+AGLD +  + Q++ + G A
Sbjct:    3 LVHFAIQSSKADAKIKLARLFPSSNNKKSKVHPGTESCGPTESSVAVTRAVPLHAEQ-------ESKEDSDSDFNYSDFSEEDAVDGSGAASQAQPVGAHRTRRQSIAAGLDLLRFVHQNQQQPGSA 122
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1037.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3GTF8_9STRA8.870e-1970.77Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3HJ74_9STRA2.610e-1775.00Hypothetical protein n=6 Tax=Spumella elongata Tax... [more]
A0A7S3HCH1_9STRA1.020e-1540.52Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3GTZ7_9STRA2.020e-748.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3HC08_9STRA2.840e-742.19Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3M1C7_9STRA3.550e-735.43Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1037contigD-dudresnayi_contig1037:9480..9986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size508
Cds size507
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927536.2788012-CDS-D-dudresnayi_contig1037:9479..99861622927536.2788012-CDS-D-dudresnayi_contig1037:9479..9986Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1037 9480..9986 +
1690556797.7565296-CDS-D-dudresnayi_contig1037:9479..99861690556797.7565296-CDS-D-dudresnayi_contig1037:9479..9986Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1037 9480..9986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1037.399.1prot_D-dudresnayi_contig1037.399.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1037 9480..9986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1037.399.1

>prot_D-dudresnayi_contig1037.399.1 ID=prot_D-dudresnayi_contig1037.399.1|Name=mRNA_D-dudresnayi_contig1037.399.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=169bp
MTSTTAIGYLVLIHVQLFEIFPALVILPALVLLAIAHFIIQSSKADAQLK
LARLFPSNRKKPATTTALAIDATHTHADQVDGAVNGESKESDEEVLSALD
SDDEFGDSPIVIRVPRSAQHKTRRQSISAGLDAIHALQDRVRRGEAGYEA
SVYSELTISSDDSKESDFG
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mRNA from alignment at D-dudresnayi_contig1037:9480..9986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1037.399.1 ID=mRNA_D-dudresnayi_contig1037.399.1|Name=mRNA_D-dudresnayi_contig1037.399.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at D-dudresnayi_contig1037:9480..9986+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACGAGCACCACTGCGATTGGCTACCTCGTGTTGATCCACGTGCAGCT
GTTCGAGATCTTCCCCGCTCTGGTGATCCTGCCAGCGCTGGTACTGCTGG
CCATTGCACACTTCATCATCCAATCAAGCAAAGCTGACGCACAGCTAAAA
CTGGCTCGCCTCTTCCCAAGCAATCGCAAGAAACCAGCAACTACGACGGC
TCTGGCGATCGATGCCACCCACACCCATGCCGACCAGGTGGATGGGGCTG
TAAATGGAGAGTCGAAGGAGTCCGACGAGGAGGTCCTCTCTGCCCTGGAC
TCCGATGACGAGTTCGGGGACTCTCCGATCGTAATCCGAGTGCCTAGATC
CGCCCAGCACAAGACGAGACGACAGAGTATTAGTGCTGGTTTGGATGCTA
TTCATGCTCTGCAAGACCGGGTTAGACGTGGTGAAGCTGGGTATGAAGCG
AGTGTATACAGCGAACTAACCATCAGCAGTGATGATTCCAAAGAATCGGA
TTTTGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1037:9480..9986+

>mRNA_D-dudresnayi_contig1037.399.1 ID=mRNA_D-dudresnayi_contig1037.399.1|Name=mRNA_D-dudresnayi_contig1037.399.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at D-dudresnayi_contig1037:9480..9986+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACGAGCACCACTGCGATTGGCTACCTCGTGTTGATCCACGTGCAGCT
GTTCGAGATCTTCCCCGCTCTGGTGATCCTGCCAGCGCTGGTACTGCTGG
CCATTGCACACTTCATCATCCAATCAAGCAAAGCTGACGCACAGCTAAAA
CTGGCTCGCCTCTTCCCAAGCAATCGCAAGAAACCAGCAACTACGACGGC
TCTGGCGATCGATGCCACCCACACCCATGCCGACCAGGTGGATGGGGCTG
TAAATGGAGAGTCGAAGGAGTCCGACGAGGAGGTCCTCTCTGCCCTGGAC
TCCGATGACGAGTTCGGGGACTCTCCGATCGTAATCCGAGTGCCTAGATC
CGCCCAGCACAAGACGAGACGACAGAGTATTAGTGCTGGTTTGGATGCTA
TTCATGCTCTGCAAGACCGGGTTAGACGTGGTGAAGCTGGGTATGAAGCG
AGTGTATACAGCGAACTAACCATCAGCAGTGATGATTCCAAAGAATCGGA
TTTTGGGATGACGAGCACCACTGCGATTGGCTACCTCGTGTTGATCCACG
TGCAGCTGTTCGAGATCTTCCCCGCTCTGGTGATCCTGCCAGCGCTGGTA
CTGCTGGCCATTGCACACTTCATCATCCAATCAAGCAAAGCTGACGCACA
GCTAAAACTGGCTCGCCTCTTCCCAAGCAATCGCAAGAAACCAGCAACTA
CGACGGCTCTGGCGATCGATGCCACCCACACCCATGCCGACCAGGTGGAT
GGGGCTGTAAATGGAGAGTCGAAGGAGTCCGACGAGGAGGTCCTCTCTGC
CCTGGACTCCGATGACGAGTTCGGGGACTCTCCGATCGTAATCCGAGTGC
CTAGATCCGCCCAGCACAAGACGAGACGACAGAGTATTAGTGCTGGTTTG
GATGCTATTCATGCTCTGCAAGACCGGGTTAGACGTGGTGAAGCTGGGTA
TGAAGCGAGTGTATACAGCGAACTAACCATCAGCAGTGATGATTCCAAAG
AATCGGATTTTGGG
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