mRNA_D-dudresnayi_contig10367.395.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10367.395.1
Unique NamemRNA_D-dudresnayi_contig10367.395.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A7S3M291_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M291_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.980e-43
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 IIVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAWTGFAALVYM 381
            IIVLAP MG IVDRVG+R +FCA  A+M   AY VL++T A+PYLKMALISIP G+IPVLTLAEIS+LLP+  VG+AFG VEVLDSVVNVLGN+ FG LYN+TGSY  GM  LL+ +  GF   +Y+
Sbjct:  267 IIVLAPCMGFIVDRVGKRNVFCAGAAMMTTTAYMVLVFTSASPYLKMALISIPQGLIPVLTLAEISTLLPMHLVGVAFGFVEVLDSVVNVLGNIAFGGLYNLTGSYQAGMMALLVLSLVGFFMTLYV 393          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A5D6XU00_9STRA (MFS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XU00_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.300e-17
Identity = 47/130 (36.15%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAWTGFAALVYMVVKD 393
            +V APV+GL +DR G RML   A+++++++AY ++++TDA+P + M LISI     P + +A ++  +   + G AFGIVE+ D++   +GN++ G++ + TGSY   M +LL  A   F   + ++++D
Sbjct:  391 VVFAPVIGLCIDRFGGRMLLIIASSVLSIVAYALMIFTDAHPVVSMVLISICLSFTPTILIAAVAKSVGRKNFGAAFGIVEIADAIGASVGNIIIGYVRDKTGSYDADMLLLLGMAVATFLLSLVLLIED 520          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A8K1CGU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGU8_PYTOL)

HSP 1 Score: 86.3 bits (212), Expect = 4.090e-17
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAWTGFAALVYMVVKD 393
            +V AP +GL +D+ G RM +  A+AL++++AY ++++T+ NP + M LISI     P + +A I + +     G AFGIVEV D+V   +GN++ G+L + TGSY   M VL   A   F   V +V +D
Sbjct:  337 VVFAPFIGLFIDQFGGRMYWIVASALLSILAYGLMIFTEVNPVISMVLISICLSFTPTILMAAIPNSVSRRKFGAAFGIVEVTDAVGATIGNLMIGYLRDKTGSYDLDMLVLFSMAIVTFGLSVLLVFQD 466          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A024G0R4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G0R4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.100e-16
Identity = 43/117 (36.75%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAW 354
            ++ AP++G ++D+ GQR+ +      +A+++Y +LL+TD +P + M ++SI     P + +A I   +    +G+AFGIVE+ D++   LGN++ G++ +VTGSYH  M VL + AW
Sbjct:  414 VMFAPLIGYLIDQDGQRIAWIFLACALAILSYGLLLFTDISPIVSMVIMSICLSFTPTILMAAIPITVSTCRLGVAFGIVEITDAIGAALGNLVIGYVRDVTGSYHADMIVLFVLAW 530          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A2D4BWC6_PYTIN (MFS domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWC6_PYTIN)

HSP 1 Score: 81.6 bits (200), Expect = 1.100e-16
Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAWTGFAALVYMVVKD 393
            +VLAP +G  +D+ G RM +   +A++++IAY+++++T+ NP + M +IS+     P + +A I + +   + G AFGIVEV D+V   LGN++ G+L + TGSY   M +LL  A       V +V +D
Sbjct:    6 VVLAPFIGYFIDQFGGRMYWIIGSAVLSIIAYSLMIFTEVNPIVSMLIISVCLSFTPTILMASIPNTVSRRNFGAAFGIVEVTDAVGATLGNLMIGFLRDKTGSYDLDMYILLGMAVMTLVLSVVLVFED 135          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A6A3LWP0_9STRA (MFS domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LWP0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.170e-16
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAWTGFAALV 375
            +V AP +GL +D+ G R+L     A+++V+ Y  +++TD NP + M LIS+     P + +A I + +   S G AFGI+E+ D++    GN+L G+L + TGSYHT M +LL     G A LV
Sbjct:   64 VVFAPFIGLAIDQFGGRILLIILAAILSVLVYVFMIFTDINPLVSMLLISVCLSFTPTILMAAIPNSVSRKSFGTAFGIIEITDAIGATFGNLLVGFLRDETGSYHTVMLMLL-----GMAVLV 182          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A6G0LS56_9STRA (MFS domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LS56_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.270e-16
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAWTGFAALV 375
            +V AP +GL +D+ G R+L     A+++V+ Y  +++TD NP + M LIS+     P + +A I + +   S G AFGI+E+ D++    GN+L G+L + TGSYHT M +LL     G A LV
Sbjct:   70 VVFAPFIGLAIDQFGGRILLIILAAILSVLVYVFMIFTDINPLVSMLLISVCLSFTPTILMAAIPNSVSRKSFGTAFGIIEITDAIGATFGNLLVGFLRDETGSYHTVMLMLL-----GMAVLV 188          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: M4BR89_HYAAE (MFS domain-containing protein n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BR89_HYAAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.370e-16
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLL 342
            +V APV+GL VD+ G R L     A+M+++AY ++++TD  P + M LISI     P + +A I S +   S G AFGIVE++D+V    GN+L G+L + TGSY   M +LL
Sbjct:  271 VVFAPVIGLAVDQFGGRSLLIILAAMMSIMAYVLMIFTDITPLVSMLLISICLSFTPTILMAAIPSSVSCKSFGTAFGIVEIIDAVGATFGNLLVGYLRDETGSYRNVMFMLL 383          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A6A3SRL1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3SRL1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.690e-16
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAWTGFAALV 375
            +V AP +GL +D+ G R+L     A+++V+ Y  +++TD NP + M LIS+     P + +A I + +   S G AFGI+E+ D++    GN+L G+L + TGSYHT M +LL     G A LV
Sbjct:  140 VVFAPFIGLAIDQFGGRILLIILAAILSVLVYVFMIFTDINPLVSMLLISVCLSFTPTILMAAIPNSVSRKSFGTAFGIIEITDAIGATFGNLLVGFLCDETGSYHTVMLMLL-----GMAVLV 258          
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Match: A0A6A3VGJ5_9STRA (MFS domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VGJ5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.670e-16
Identity = 50/124 (40.32%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    4 IVLAPVMGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMIPVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYHTGMTVLLLFAWTGFAALV 375
            +V AP +GL +D+ G R+L     A+++V+AY  +++TD NP + M LIS+     P + +A I + +   S G AFGIVE+ D++    GN+L G+L + TGSY  GM +LL     G A LV
Sbjct:  351 VVFAPFIGLAIDQFGGRILLIILAAILSVLAYVFMIFTDINPLVSMLLISVCLSFTPTVLMAAIPNSVSRKSFGTAFGIVEITDAIGATFGNLLVGYLRDETGSYRAGMLMLL-----GMAVLV 469          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10367.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M291_9STRA1.980e-4366.93Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5D6XU00_9STRA2.300e-1736.15MFS domain-containing protein n=1 Tax=Pythium bras... [more]
A0A8K1CGU8_PYTOL4.090e-1739.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024G0R4_9STRA1.100e-1636.75Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A2D4BWC6_PYTIN1.100e-1636.92MFS domain-containing protein n=1 Tax=Pythium insi... [more]
A0A6A3LWP0_9STRA1.170e-1639.52MFS domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6G0LS56_9STRA1.270e-1639.52MFS domain-containing protein n=3 Tax=Phytophthora... [more]
M4BR89_HYAAE2.370e-1643.36MFS domain-containing protein n=3 Tax=Hyaloperonos... [more]
A0A6A3SRL1_9STRA2.690e-1639.52Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
A0A6A3VGJ5_9STRA3.670e-1640.32MFS domain-containing protein n=3 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10367contigD-dudresnayi_contig10367:6388..6846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue6.8e-12
Seed eggNOG ortholog115417.EPrPW00000016439
Preferred nameim:7160594
EggNOG free text desc.Major Facilitator Superfamily (MFS). Source PGD
EggNOG OGs1MG2C@121069,COG0477@1,KOG4686@2759
COG Functional cat.G
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size393
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10367.395.1prot_D-dudresnayi_contig10367.395.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10367 6409..6846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927535.7805967-UTR-D-dudresnayi_contig10367:6387..64081622927535.7805967-UTR-D-dudresnayi_contig10367:6387..6408Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10367 6388..6408 +
1690556797.4811716-UTR-D-dudresnayi_contig10367:6387..64081690556797.4811716-UTR-D-dudresnayi_contig10367:6387..6408Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10367 6388..6408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927535.794617-CDS-D-dudresnayi_contig10367:6408..64651622927535.794617-CDS-D-dudresnayi_contig10367:6408..6465Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10367 6409..6465 +
1690556797.4939778-CDS-D-dudresnayi_contig10367:6408..64651690556797.4939778-CDS-D-dudresnayi_contig10367:6408..6465Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10367 6409..6465 +
1622927535.8129363-CDS-D-dudresnayi_contig10367:6531..68461622927535.8129363-CDS-D-dudresnayi_contig10367:6531..6846Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10367 6532..6846 +
1690556797.5038838-CDS-D-dudresnayi_contig10367:6531..68461690556797.5038838-CDS-D-dudresnayi_contig10367:6531..6846Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10367 6532..6846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10367.395.1

>prot_D-dudresnayi_contig10367.395.1 ID=prot_D-dudresnayi_contig10367.395.1|Name=mRNA_D-dudresnayi_contig10367.395.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=124bp
MGLIVDRVGQRMLFCAATALMAVIAYTVLLYTDANPYLKMALISIPHGMI
PVLTLAEISSLLPVSSVGIAFGIVEVLDSVVNVLGNVLFGWLYNVTGSYH
TGMTVLLLFAWTGFAALVYMVVKD
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mRNA from alignment at D-dudresnayi_contig10367:6388..6846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10367.395.1 ID=mRNA_D-dudresnayi_contig10367.395.1|Name=mRNA_D-dudresnayi_contig10367.395.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=459bp|location=Sequence derived from alignment at D-dudresnayi_contig10367:6388..6846+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATCATAGTGCTGGCGCCAGTAATGGGGTTAATTGTGGATCGTGTGGGCCA GCGCATGCTATTCTGCGCAGCTACTGCGGTGAGTGACTCTATTACCTTAC TAATATGCTTTTTATTACCTAACTGTGCGTATATGATTGTGCAGTTGATG GCGGTGATCGCATACACTGTGCTGCTATACACGGATGCGAATCCGTACCT GAAGATGGCGCTGATCTCGATCCCCCACGGCATGATCCCGGTGCTCACCC TGGCGGAGATCTCCTCCCTCCTCCCCGTCTCCTCTGTAGGCATTGCGTTT GGGATAGTGGAGGTACTAGACAGCGTAGTGAATGTTCTGGGGAACGTTCT CTTTGGGTGGCTGTATAATGTAACTGGCAGCTACCACACTGGGATGACAG TCCTGCTGCTCTTCGCGTGGACGGGCTTTGCTGCGCTGGTCTATATGGTA GTAAAAGAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10367:6388..6846+

>mRNA_D-dudresnayi_contig10367.395.1 ID=mRNA_D-dudresnayi_contig10367.395.1|Name=mRNA_D-dudresnayi_contig10367.395.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at D-dudresnayi_contig10367:6388..6846+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGGTTAATTGTGGATCGTGTGGGCCAGCGCATGCTATTCTGCGCAGC
TACTGCGATGGGGTTAATTGTGGATCGTGTGGGCCAGCGCATGCTATTCT
GCGCAGCTACTGCGTTGATGGCGGTGATCGCATACACTGTGCTGCTATAC
ACGGATGCGAATCCGTACCTGAAGATGGCGCTGATCTCGATCCCCCACGG
CATGATCCCGGTGCTCACCCTGGCGGAGATCTCCTCCCTCCTCCCCGTCT
CCTCTGTAGGCATTGCGTTTGGGATAGTGGAGGTACTAGACAGCGTAGTG
AATGTTCTGGGGAACGTTCTCTTTGGGTGGCTGTATAATGTAACTGGCAG
CTACCACACTGGGATGACAGTCCTGCTGCTCTTCGCGTGGACGGGCTTTG
CTGCGCTGGTCTATATGGTAGTAAAAGATTTGATGGCGGTGATCGCATAC
ACTGTGCTGCTATACACGGATGCGAATCCGTACCTGAAGATGGCGCTGAT
CTCGATCCCCCACGGCATGATCCCGGTGCTCACCCTGGCGGAGATCTCCT
CCCTCCTCCCCGTCTCCTCTGTAGGCATTGCGTTTGGGATAGTGGAGGTA
CTAGACAGCGTAGTGAATGTTCTGGGGAACGTTCTCTTTGGGTGGCTGTA
TAATGTAACTGGCAGCTACCACACTGGGATGACAGTCCTGCTGCTCTTCG
CGTGGACGGGCTTTGCTGCGCTGGTCTATATGGTAGTAAAAGAT
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