mRNA_D-dudresnayi_contig10366.392.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10366.392.1
Unique NamemRNA_D-dudresnayi_contig10366.392.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10366.392.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 6.350e-59
Identity = 98/122 (80.33%), Postives = 113/122 (92.62%), Query Frame = 1 
Query:   10 QVRKLLERGCQDINRGDKFGQTPLHIACHREGLLGCLKLLAVHQADLGALDANSNTALHSAAGSGAAAAAEFLLGRGLSVADRNEDGHTPMDICNMHCPAEKRNSIQILLEGGAKV-EEDRA 372
            + RKLL++GC D+NRGDKFGQTPLHIACHREGLLGCL+LLA H+A+L ALDAN NTALHSAAGSGAAAAA+FLLGRGLSVADRN+DGHTPMDIC +HCPA+K+ ++Q+LLEGG KV EEDRA
Sbjct:   32 KARKLLQKGCPDVNRGDKFGQTPLHIACHREGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGRGLSVADRNKDGHTPMDICMLHCPADKKRTMQLLLEGGVKVGEEDRA 153
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BLAST of mRNA_D-dudresnayi_contig10366.392.1 vs. uniprot
Match: D7FI33_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI33_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 9.800e-41
Identity = 73/93 (78.49%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:   97 REGLLGCLKLLAVHQADLGALDANSNTALHSAAGSGAAAAAEFLLGRGLSVADRNEDGHTPMDICNMHCPAEKRNSIQILLEGGAKV-EEDRA 372
            REGLLGCL+LLA H+A+L ALDAN NTALHSAAGSGAAAAA+FLLG GLSVAD+N+DGHTPMDIC +HCPA+K+ ++Q+LLEGG KV EEDRA
Sbjct:   13 REGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGCGLSVADKNKDGHTPMDICTLHCPADKKRTMQLLLEGGVKVGEEDRA 105
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BLAST of mRNA_D-dudresnayi_contig10366.392.1 vs. uniprot
Match: A0A0M8ZYZ1_9HYME (Transient receptor potential channel pyrexia (Fragment) n=1 Tax=Melipona quadrifasciata TaxID=166423 RepID=A0A0M8ZYZ1_9HYME)

HSP 1 Score: 58.9 bits (141), Expect = 3.630e-7
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:   13 VRKLLERGCQDINRGDKFGQTPLHIACHREGLLGCLKLLAVHQADLGALDANSNTALHSAAGSGAAAAAEFLLGRGLSVADRNEDGHTPMDICNMHCPAEKRNSIQILLE 342
            V +LL     +IN+ DK+G TPLHIA   E L  C+ +L  H ADL A        LH A  +GA    + LL RG SV ++N  G TP+ +    C  +    +++LL+
Sbjct:  551 VTELLITWKANINKTDKYGYTPLHIAALNE-LSQCVDVLIQHGADLSA----RTKVLHCAIRAGAVEIVKLLLERGASVVEKNHMGETPLHVA---CFIQSIKCVELLLD 652
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BLAST of mRNA_D-dudresnayi_contig10366.392.1 vs. uniprot
Match: C1EFV4_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EFV4_MICCC)

HSP 1 Score: 50.8 bits (120), Expect = 1.310e-5
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   58 DKFGQTPLHIACHREGLLGCLKLLAVHQADLGALDANSNTALHSAAGSGAAAAAEFLLGRGLSVADRNEDGHTPMD 285
            DKFG TPL +AC + G     K+   + AD+ A +   NTALH A   G  A  +FL+ +G S   RN+DG TP +
Sbjct:    7 DKFGNTPLLVAC-QNGHGRLAKMCVRYGADVNAANNKRNTALHFAVQYGFDALGDFLVEKGASRDARNDDGRTPYE 81
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10366.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGS5_9PHAE6.350e-5980.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI33_ECTSI9.800e-4178.49Ankyrin repeat protein (Partial) (Fragment) n=1 Ta... [more]
A0A0M8ZYZ1_9HYME3.630e-737.27Transient receptor potential channel pyrexia (Frag... [more]
C1EFV4_MICCC1.310e-542.11Uncharacterized protein (Fragment) n=1 Tax=Micromo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10366contigD-dudresnayi_contig10366:660..1408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_003330.1
Exons2
Model size472
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927535.3896465-CDS-D-dudresnayi_contig10366:659..9411622927535.3896465-CDS-D-dudresnayi_contig10366:659..941Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10366 660..941 +
1690556797.3108675-CDS-D-dudresnayi_contig10366:659..9411690556797.3108675-CDS-D-dudresnayi_contig10366:659..941Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10366 660..941 +
1622927535.4049485-CDS-D-dudresnayi_contig10366:1219..14081622927535.4049485-CDS-D-dudresnayi_contig10366:1219..1408Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10366 1220..1408 +
1690556797.3177648-CDS-D-dudresnayi_contig10366:1219..14081690556797.3177648-CDS-D-dudresnayi_contig10366:1219..1408Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10366 1220..1408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10366.392.1prot_D-dudresnayi_contig10366.392.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10366 660..1408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10366.392.1

>prot_D-dudresnayi_contig10366.392.1 ID=prot_D-dudresnayi_contig10366.392.1|Name=mRNA_D-dudresnayi_contig10366.392.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=157bp
MTTQVRKLLERGCQDINRGDKFGQTPLHIACHREGLLGCLKLLAVHQADL
GALDANSNTALHSAAGSGAAAAAEFLLGRGLSVADRNEDGHTPMDICNMH
CPAEKRNSIQILLEGGAKVEEDRAAGGEATASSNNKNSSSSGGGGSGSNA
PGILASS
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mRNA from alignment at D-dudresnayi_contig10366:660..1408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10366.392.1 ID=mRNA_D-dudresnayi_contig10366.392.1|Name=mRNA_D-dudresnayi_contig10366.392.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=749bp|location=Sequence derived from alignment at D-dudresnayi_contig10366:660..1408+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACAACACAGGTCCGAAAGCTGCTGGAGAGAGGATGTCAAGACATCAA
TCGCGGAGACAAGTTCGGACAGACCCCCCTCCACATCGCCTGTCACAGAG
AAGGCCTTCTGGGCTGTCTCAAACTCCTCGCTGTGCACCAGGCCGATCTG
GGAGCTTTGGATGCGAACAGCAACACCGCCCTTCACTCGGCGGCGGGATC
GGGGGCGGCGGCTGCGGCGGAGTTTTTGCTGGGCCGAGGGTTGTCGGTCG
CGGACAGGAATGAAGACGGGCACACGCCGATGGTGGGTTGTTGTTTTTTT
GAAATAACCAAGCCGTTCGTACACTATAATAGCAGAATATGTATCTTGAC
ACGGCACGGCGCGTTGTACTTATATAGCCAGTGTAGCCGATGAAGGAGTA
CGTTAAGCTCTAATCTTACAGAAAATTTGAGTGTTTGATGATGTTGATGG
TGATTACGATGATGAAGACGATGACGATGATGACGATGTTTCGCTTCCCC
CGCTCACTCAACCCATGGCCTTTTTTCCCCTTGCGTCTCACACATCTAAA
AAAAAAAAAGGACATATGCAACATGCACTGTCCGGCAGAAAAACGAAACT
CCATACAGATTCTATTAGAGGGAGGCGCCAAGGTTGAAGAAGACAGAGCA
GCAGGGGGCGAGGCCACGGCCAGCAGCAACAACAAAAATAGCAGCAGCAG
CGGCGGCGGCGGCAGTGGCAGTAACGCGCCCGGAATCCTCGCCTCGTCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10366:660..1408+

>mRNA_D-dudresnayi_contig10366.392.1 ID=mRNA_D-dudresnayi_contig10366.392.1|Name=mRNA_D-dudresnayi_contig10366.392.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at D-dudresnayi_contig10366:660..1408+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACAACACAGGTCCGAAAGCTGCTGGAGAGAGGATGTCAAGACATCAA
TCGCGGAGACAAGTTCGGACAGACCCCCCTCCACATCGCCTGTCACAGAG
AAGGCCTTCTGGGCTGTCTCAAACTCCTCGCTGTGCACCAGGCCGATCTG
GGAGCTTTGGATGCGAACAGCAACACCGCCCTTCACTCGGCGGCGGGATC
GGGGGCGGCGGCTGCGGCGGAGTTTTTGCTGGGCCGAGGGTTGTCGGTCG
CGGACAGGAATGAAGACGGGCACACGCCGATGATGACAACACAGGTCCGA
AAGCTGCTGGAGAGAGGATGTCAAGACATCAATCGCGGAGACAAGTTCGG
ACAGACCCCCCTCCACATCGCCTGTCACAGAGAAGGCCTTCTGGGCTGTC
TCAAACTCCTCGCTGTGCACCAGGCCGATCTGGGAGCTTTGGATGCGAAC
AGCAACACCGCCCTTCACTCGGCGGCGGGATCGGGGGCGGCGGCTGCGGC
GGAGTTTTTGCTGGGCCGAGGGTTGTCGGTCGCGGACAGGAATGAAGACG
GGCACACGCCGATGGACATATGCAACATGCACTGTCCGGCAGAAAAACGA
AACTCCATACAGATTCTATTAGAGGGAGGCGCCAAGGTTGAAGAAGACAG
AGCAGCAGGGGGCGAGGCCACGGCCAGCAGCAACAACAAAAATAGCAGCA
GCAGCGGCGGCGGCGGCAGTGGCAGTAACGCGCCCGGAATCCTCGCCTCG
TCCGACATATGCAACATGCACTGTCCGGCAGAAAAACGAAACTCCATACA
GATTCTATTAGAGGGAGGCGCCAAGGTTGAAGAAGACAGAGCAGCAGGGG
GCGAGGCCACGGCCAGCAGCAACAACAAAAATAGCAGCAGCAGCGGCGGC
GGCGGCAGTGGCAGTAACGCGCCCGGAATCCTCGCCTCGTCC
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