mRNA_D-dudresnayi_contig10345.367.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10345.367.1
Unique NamemRNA_D-dudresnayi_contig10345.367.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10345.367.1 vs. uniprot
Match: A0A6H5KUR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR1_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.610e-7
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:   31 RLTAARARLRSLSVSNFNSGA----SGRGSGGTRDPEIAAVERAMKAAAAQKRWEGRLREEKTRGEAYKSTAEAAETGMQRAVREKAKLEEVNRILVKQL 318
            RL AARARL+ LS S     +     GRG     + E AAVERA+    A+K+W  +LR  + +G+ ++S A+A+ TGM+ A+R+KA+LEE+NR+LVKQL
Sbjct:  366 RLAAARARLKVLSTSGAAVSSITTEKGRGQWHAGE-ERAAVERAVGTVVAEKQWRDKLRNAEMQGKVFQSAAKASATGMKMALRQKAELEEMNRVLVKQL 464
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BLAST of mRNA_D-dudresnayi_contig10345.367.1 vs. uniprot
Match: D7FPG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPG8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.200e-6
Identity = 34/64 (53.12%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:  127 EIAAVERAMKAAAAQKRWEGRLREEKTRGEAYKSTAEAAETGMQRAVREKAKLEEVNRILVKQL 318
            E AAVERA+   AA+K+W  +LR  + +GE ++S A+A+ TGM+ A+++KA+LEE+NR+LVKQL
Sbjct:  343 ERAAVERAVGTVAAEKQWRDKLRNAEMQGEVFQSAAKASATGMKIALKQKAELEEMNRVLVKQL 406
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10345.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUR1_9PHAE1.610e-747.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPG8_ECTSI3.200e-653.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10345contigD-dudresnayi_contig10345:5706..7326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1458
Cds size1455
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.5913918-CDS-D-dudresnayi_contig10345:5705..70851622927532.5913918-CDS-D-dudresnayi_contig10345:5705..7085Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10345 5706..7085 +
1690556795.9881089-CDS-D-dudresnayi_contig10345:5705..70851690556795.9881089-CDS-D-dudresnayi_contig10345:5705..7085Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10345 5706..7085 +
1622927532.61358-CDS-D-dudresnayi_contig10345:7249..73241622927532.61358-CDS-D-dudresnayi_contig10345:7249..7324Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10345 7250..7324 +
1690556796.0058913-CDS-D-dudresnayi_contig10345:7249..73241690556796.0058913-CDS-D-dudresnayi_contig10345:7249..7324Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10345 7250..7324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10345.367.1prot_D-dudresnayi_contig10345.367.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10345 5706..7324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10345.367.1

>prot_D-dudresnayi_contig10345.367.1 ID=prot_D-dudresnayi_contig10345.367.1|Name=mRNA_D-dudresnayi_contig10345.367.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=485bp
ASSVCAETGERLTAARARLRSLSVSNFNSGASGRGSGGTRDPEIAAVERA
MKAAAAQKRWEGRLREEKTRGEAYKSTAEAAETGMQRAVREKAKLEEVNR
ILVKQLEEKSSEAASARTDRHSGRSAIVSGGRDSGTNGAVNVHEQDAVVP
GGQASASGSDLPASTAGGNDTEKNKRVATALFLDTTRLSPPTHLSSDLAE
TDSLPAAVTAVPSSRSDVCAFTRQATRSQEWATNTFPIATRLQTARSYSA
DGVSGRGLSLLKGRHDACPHSTRETNPQSDHDDLQEVREEPREMTARDNS
ATSYDQLILKSRQLRAESLSAVRQGPWGDGAQSISSAAPSPQVLQPQPQP
EVQAQGNLTTASCNTGAQVDPVASVPIDVLLRLCDISARGGRGEETRKGV
ILDARATACSCSNQVEKDMEEKREGVGRKTGLPQPPAQPGVGAVDDVMLP
VGVSATLAEQVQDAVSRGDERSFLQVVGRCGSTAR
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mRNA from alignment at D-dudresnayi_contig10345:5706..7326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10345.367.1 ID=mRNA_D-dudresnayi_contig10345.367.1|Name=mRNA_D-dudresnayi_contig10345.367.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1621bp|location=Sequence derived from alignment at D-dudresnayi_contig10345:5706..7326+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCTAGTAGTGTTTGCGCTGAGACTGGCGAGAGGCTCACGGCAGCTAGGGC
ACGTCTTCGTAGCCTGTCCGTTAGTAACTTTAATAGCGGGGCTAGTGGCC
GTGGTTCCGGCGGCACAAGGGACCCCGAAATAGCGGCAGTAGAGCGTGCT
ATGAAAGCTGCCGCTGCCCAGAAGAGATGGGAGGGAAGGCTTCGAGAGGA
AAAGACGCGGGGGGAGGCCTACAAGTCGACCGCCGAGGCCGCTGAGACGG
GGATGCAGAGGGCTGTGAGAGAGAAGGCCAAGCTCGAGGAGGTGAACCGT
ATCCTGGTGAAACAACTCGAGGAAAAGTCAAGCGAGGCGGCCAGCGCCAG
GACTGATAGACACAGCGGGCGCTCCGCTATTGTTTCGGGTGGCAGAGATA
GCGGCACGAACGGCGCGGTAAATGTACATGAGCAGGACGCGGTGGTGCCG
GGCGGTCAAGCCTCCGCCTCTGGATCTGATTTACCAGCGAGCACTGCTGG
CGGCAACGACACCGAAAAAAATAAGCGTGTTGCGACAGCTCTATTTCTGG
ATACTACCCGACTGTCGCCGCCCACGCATCTTTCTTCGGATCTGGCTGAG
ACGGATAGTTTACCTGCAGCCGTTACAGCGGTCCCCTCCAGCCGCTCTGA
TGTCTGTGCTTTTACGAGGCAGGCAACAAGGAGTCAGGAGTGGGCGACGA
ACACATTTCCAATTGCAACCAGGTTGCAAACGGCGCGATCCTACAGCGCC
GATGGGGTGAGTGGGAGAGGATTGTCATTGCTCAAAGGGCGCCATGACGC
CTGCCCGCACTCCACCAGGGAAACTAACCCGCAGTCCGACCATGACGACC
TACAAGAGGTACGCGAAGAACCACGCGAGATGACTGCACGTGACAATTCT
GCTACGTCGTACGATCAGCTCATCTTGAAATCCAGACAGTTACGCGCAGA
ATCGCTCTCTGCCGTGCGTCAGGGGCCGTGGGGTGATGGTGCCCAGAGTA
TTAGTTCCGCAGCACCGAGCCCCCAGGTGTTGCAACCGCAACCGCAGCCA
GAAGTTCAAGCGCAAGGCAACCTTACTACCGCAAGCTGCAACACGGGCGC
CCAGGTCGATCCGGTGGCATCGGTGCCGATCGATGTGTTGTTGCGACTTT
GCGACATAAGTGCTCGCGGCGGGAGGGGGGAAGAAACAAGGAAGGGCGTG
ATTTTGGATGCTAGAGCCACGGCCTGTAGCTGCTCTAATCAGGTCGAAAA
AGACATGGAAGAGAAAAGAGAAGGTGTCGGTAGGAAGACGGGCTTGCCGC
AGCCACCCGCCCAACCAGGCGTAGGAGCAGTAGATGATGTCATGCTGCCG
GTGGGGGTCAGCGCTACGCTGGCGGAGCAGGTGAGGAGAAAGAGAGACAG
GCCTTGCGGTGGTTGGCCAAAAGGGGCCGGGGTTTCATTTCACAGCTACG
CTCTTCCTACCATCGCAGTATTTATGGAAATTCGCCACTGTAACCTGGCC
ACCACGTTCCCAACCGTACGCGCTCCTATTCATCAACACTGCAGGTACAG
GATGCGGTATCTCGGGGCGACGAACGCAGCTTTCTCCAAGTCGTCGGTCG
ATGCGGGAGCACCGCGAGGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10345:5706..7326+

>mRNA_D-dudresnayi_contig10345.367.1 ID=mRNA_D-dudresnayi_contig10345.367.1|Name=mRNA_D-dudresnayi_contig10345.367.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2910bp|location=Sequence derived from alignment at D-dudresnayi_contig10345:5706..7326+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCTAGTAGTGTTTGCGCTGAGACTGGCGAGAGGCTCACGGCAGCTAGGGC
ACGTCTTCGTAGCCTGTCCGTTAGTAACTTTAATAGCGGGGCTAGTGGCC
GTGGTTCCGGCGGCACAAGGGACCCCGAAATAGCGGCAGTAGAGCGTGCT
ATGAAAGCTGCCGCTGCCCAGAAGAGATGGGAGGGAAGGCTTCGAGAGGA
AAAGACGCGGGGGGAGGCCTACAAGTCGACCGCCGAGGCCGCTGAGACGG
GGATGCAGAGGGCTGTGAGAGAGAAGGCCAAGCTCGAGGAGGTGAACCGT
ATCCTGGTGAAACAACTCGAGGAAAAGTCAAGCGAGGCGGCCAGCGCCAG
GACTGATAGACACAGCGGGCGCTCCGCTATTGTTTCGGGTGGCAGAGATA
GCGGCACGAACGGCGCGGTAAATGTACATGAGCAGGACGCGGTGGTGCCG
GGCGGTCAAGCCTCCGCCTCTGGATCTGATTTACCAGCGAGCACTGCTGG
CGGCAACGACACCGAAAAAAATAAGCGTGTTGCGACAGCTCTATTTCTGG
ATACTACCCGACTGTCGCCGCCCACGCATCTTTCTTCGGATCTGGCTGAG
ACGGATAGTTTACCTGCAGCCGTTACAGCGGTCCCCTCCAGCCGCTCTGA
TGTCTGTGCTTTTACGAGGCAGGCAACAAGGAGTCAGGAGTGGGCGACGA
ACACATTTCCAATTGCAACCAGGTTGCAAACGGCGCGATCCTACAGCGCC
GATGGGGTGAGTGGGAGAGGATTGTCATTGCTCAAAGGGCGCCATGACGC
CTGCCCGCACTCCACCAGGGAAACTAACCCGCAGTCCGACCATGACGACC
TACAAGAGGTACGCGAAGAACCACGCGAGATGACTGCACGTGACAATTCT
GCTACGTCGTACGATCAGCTCATCTTGAAATCCAGACAGTTACGCGCAGA
ATCGCTCTCTGCCGTGCGTCAGGGGCCGTGGGGTGATGGTGCCCAGAGTA
TTAGTTCCGCAGCACCGAGCCCCCAGGTGTTGCAACCGCAACCGCAGCCA
GAAGTTCAAGCGCAAGGCAACCTTACTACCGCAAGCTGCAACACGGGCGC
CCAGGTCGATCCGGTGGCATCGGTGCCGATCGATGTGTTGTTGCGACTTT
GCGACATAAGTGCTCGCGGCGGGAGGGGGGAAGAAACAAGGAAGGGCGTG
ATTTTGGATGCTAGAGCCACGGCCTGTAGCTGCTCTAATCAGGTCGAAAA
AGACATGGAAGAGAAAAGAGAAGGTGTCGGTAGGAAGACGGGCTTGCCGC
AGCCACCCGCCCAACCAGGCGTAGGAGCAGTAGATGATGTCATGCTGCCG
GTGGGGGTCAGCGCTACGCTGGCGGAGCAGGCTAGTAGTGTTTGCGCTGA
GACTGGCGAGAGGCTCACGGCAGCTAGGGCACGTCTTCGTAGCCTGTCCG
TTAGTAACTTTAATAGCGGGGCTAGTGGCCGTGGTTCCGGCGGCACAAGG
GACCCCGAAATAGCGGCAGTAGAGCGTGCTATGAAAGCTGCCGCTGCCCA
GAAGAGATGGGAGGGAAGGCTTCGAGAGGAAAAGACGCGGGGGGAGGCCT
ACAAGTCGACCGCCGAGGCCGCTGAGACGGGGATGCAGAGGGCTGTGAGA
GAGAAGGCCAAGCTCGAGGAGGTGAACCGTATCCTGGTGAAACAACTCGA
GGAAAAGTCAAGCGAGGCGGCCAGCGCCAGGACTGATAGACACAGCGGGC
GCTCCGCTATTGTTTCGGGTGGCAGAGATAGCGGCACGAACGGCGCGGTA
AATGTACATGAGCAGGACGCGGTGGTGCCGGGCGGTCAAGCCTCCGCCTC
TGGATCTGATTTACCAGCGAGCACTGCTGGCGGCAACGACACCGAAAAAA
ATAAGCGTGTTGCGACAGCTCTATTTCTGGATACTACCCGACTGTCGCCG
CCCACGCATCTTTCTTCGGATCTGGCTGAGACGGATAGTTTACCTGCAGC
CGTTACAGCGGTCCCCTCCAGCCGCTCTGATGTCTGTGCTTTTACGAGGC
AGGCAACAAGGAGTCAGGAGTGGGCGACGAACACATTTCCAATTGCAACC
AGGTTGCAAACGGCGCGATCCTACAGCGCCGATGGGGTGAGTGGGAGAGG
ATTGTCATTGCTCAAAGGGCGCCATGACGCCTGCCCGCACTCCACCAGGG
AAACTAACCCGCAGTCCGACCATGACGACCTACAAGAGGTACGCGAAGAA
CCACGCGAGATGACTGCACGTGACAATTCTGCTACGTCGTACGATCAGCT
CATCTTGAAATCCAGACAGTTACGCGCAGAATCGCTCTCTGCCGTGCGTC
AGGGGCCGTGGGGTGATGGTGCCCAGAGTATTAGTTCCGCAGCACCGAGC
CCCCAGGTGTTGCAACCGCAACCGCAGCCAGAAGTTCAAGCGCAAGGCAA
CCTTACTACCGCAAGCTGCAACACGGGCGCCCAGGTCGATCCGGTGGCAT
CGGTGCCGATCGATGTGTTGTTGCGACTTTGCGACATAAGTGCTCGCGGC
GGGAGGGGGGAAGAAACAAGGAAGGGCGTGATTTTGGATGCTAGAGCCAC
GGCCTGTAGCTGCTCTAATCAGGTCGAAAAAGACATGGAAGAGAAAAGAG
AAGGTGTCGGTAGGAAGACGGGCTTGCCGCAGCCACCCGCCCAACCAGGC
GTAGGAGCAGTAGATGATGTCATGCTGCCGGTGGGGGTCAGCGCTACGCT
GGCGGAGCAGGTACAGGATGCGGTATCTCGGGGCGACGAACGCAGCTTTC
TCCAAGTCGTCGGTCGATGCGGGAGCACCGCGAGGGTACAGGATGCGGTA
TCTCGGGGCGACGAACGCAGCTTTCTCCAAGTCGTCGGTCGATGCGGGAG
CACCGCGAGG
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