mRNA_D-dudresnayi_contig10345.366.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10345.366.1
Unique NamemRNA_D-dudresnayi_contig10345.366.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10345.366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10345contigD-dudresnayi_contig10345:4201..4848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size650
Cds size639
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.4405625-UTR-D-dudresnayi_contig10345:4200..42091622927532.4405625-UTR-D-dudresnayi_contig10345:4200..4209Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10345 4201..4209 +
1690556795.9094515-UTR-D-dudresnayi_contig10345:4200..42091690556795.9094515-UTR-D-dudresnayi_contig10345:4200..4209Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10345 4201..4209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.4560943-CDS-D-dudresnayi_contig10345:4209..48481622927532.4560943-CDS-D-dudresnayi_contig10345:4209..4848Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10345 4210..4848 +
1690556795.9174485-CDS-D-dudresnayi_contig10345:4209..48481690556795.9174485-CDS-D-dudresnayi_contig10345:4209..4848Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10345 4210..4848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10345.366.1prot_D-dudresnayi_contig10345.366.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10345 4210..4848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10345.366.1

>prot_D-dudresnayi_contig10345.366.1 ID=prot_D-dudresnayi_contig10345.366.1|Name=mRNA_D-dudresnayi_contig10345.366.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=213bp
MPRRSGHSTTTTVNSTSRWRECCTTTDVKSAKPPMVARVAANTNRPSRLK
SPSSTRSIPQQQPQQQQQQRHRRNSRNNNKLEDLELAFDLLARQIQGLDG
EEEETTNEDKTFAISSVKNVDVFTSTADTPNNTTTTVEKPIQTGKTDYDP
TTLSRPLPSEQPAPFADALDGRDKRTTATESDVIPLAADRSVPMKARQAR
RRSPRRDHGTTTA
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mRNA from alignment at D-dudresnayi_contig10345:4201..4848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10345.366.1 ID=mRNA_D-dudresnayi_contig10345.366.1|Name=mRNA_D-dudresnayi_contig10345.366.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at D-dudresnayi_contig10345:4201..4848+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAGTCCCCAATGCCCCGTCGTAGTGGCCATAGTACGACCACCACAGTAAA
TTCCACCTCACGGTGGAGAGAATGCTGTACTACCACTGACGTTAAAAGCG
CGAAGCCTCCTATGGTAGCCAGAGTAGCTGCAAACACCAATCGACCATCC
CGTTTGAAAAGCCCCAGCAGTACTCGCAGTATCCCGCAGCAGCAGCCGCA
GCAACAGCAACAGCAACGGCATCGCCGCAACAGTAGAAATAACAATAAGC
TCGAAGACCTGGAGCTCGCCTTTGACCTCCTAGCCAGACAAATTCAAGGT
TTGGACGGGGAAGAAGAGGAAACTACCAATGAAGACAAGACTTTCGCAAT
ATCTTCTGTAAAAAATGTTGATGTTTTTACGAGTACAGCAGATACACCCA
ACAACACAACAACAACGGTCGAGAAACCCATCCAGACAGGTAAGACAGAC
TACGACCCCACGACACTATCTAGGCCCTTGCCCAGCGAACAACCTGCTCC
ATTCGCCGACGCTTTGGACGGCCGCGACAAGAGGACAACTGCAACTGAAT
CTGATGTTATTCCCCTGGCGGCTGATAGGTCTGTCCCCATGAAGGCGCGG
CAAGCGCGGCGACGTTCTCCACGTCGTGATCATGGCACTACTACTGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10345:4201..4848+

>mRNA_D-dudresnayi_contig10345.366.1 ID=mRNA_D-dudresnayi_contig10345.366.1|Name=mRNA_D-dudresnayi_contig10345.366.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at D-dudresnayi_contig10345:4201..4848+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCCCGTCGTAGTGGCCATAGTACGACCACCACAGTAAATTCCACCTC
ACGGTGGAGAGAATGCTGTACTACCACTGACGTTAAAAGCGCGAAGCCTC
CTATGGTAGCCAGAGTAGCTGCAAACACCAATCGACCATCCCGTTTGAAA
AGCCCCAGCAGTACTCGCAGTATCCCGCAGCAGCAGCCGCAGCAACAGCA
ACAGCAACGGCATCGCCGCAACAGTAGAAATAACAATAAGCTCGAAGACC
TGGAGCTCGCCTTTGACCTCCTAGCCAGACAAATTCAAGGTTTGGACGGG
GAAGAAGAGGAAACTACCAATGAAGACAAGACTTTCGCAATATCTTCTGT
AAAAAATGTTGATGTTTTTACGAGTACAGCAGATACACCCAACAACACAA
CAACAACGGTCGAGAAACCCATCCAGACAGGTAAGACAGACTACGACCCC
ACGACACTATCTAGGCCCTTGCCCAGCGAACAACCTGCTCCATTCGCCGA
CGCTTTGGACGGCCGCGACAAGAGGACAACTGCAACTGAATCTGATGTTA
TTCCCCTGGCGGCTGATAGGTCTGTCCCCATGAAGGCGCGGCAAGCGCGG
CGACGTTCTCCACGTCGTGATCATGGCACTACTACTGCGATGCCCCGTCG
TAGTGGCCATAGTACGACCACCACAGTAAATTCCACCTCACGGTGGAGAG
AATGCTGTACTACCACTGACGTTAAAAGCGCGAAGCCTCCTATGGTAGCC
AGAGTAGCTGCAAACACCAATCGACCATCCCGTTTGAAAAGCCCCAGCAG
TACTCGCAGTATCCCGCAGCAGCAGCCGCAGCAACAGCAACAGCAACGGC
ATCGCCGCAACAGTAGAAATAACAATAAGCTCGAAGACCTGGAGCTCGCC
TTTGACCTCCTAGCCAGACAAATTCAAGGTTTGGACGGGGAAGAAGAGGA
AACTACCAATGAAGACAAGACTTTCGCAATATCTTCTGTAAAAAATGTTG
ATGTTTTTACGAGTACAGCAGATACACCCAACAACACAACAACAACGGTC
GAGAAACCCATCCAGACAGGTAAGACAGACTACGACCCCACGACACTATC
TAGGCCCTTGCCCAGCGAACAACCTGCTCCATTCGCCGACGCTTTGGACG
GCCGCGACAAGAGGACAACTGCAACTGAATCTGATGTTATTCCCCTGGCG
GCTGATAGGTCTGTCCCCATGAAGGCGCGGCAAGCGCGGCGACGTTCTCC
ACGTCGTGATCATGGCACTACTACTGCG
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