mRNA_D-dudresnayi_contig1034.363.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1034.363.1
Unique NamemRNA_D-dudresnayi_contig1034.363.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1034.363.1 vs. uniprot
Match: D7FNK6_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK6_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 2.500e-58
Identity = 98/138 (71.01%), Postives = 112/138 (81.16%), Query Frame = 1 
Query:    1 IFSEASKDGAVRLPESAYTGVIRACCLDDRADTAREMLEKLKKTGEKPRLRTYAALLETYARLDGRLQDCMGVWRDGVSSP----QSLTLSEREYLYLITACTRARDEKCFLEVMVEYMEDVLQPRSRQSWEVLKAWF 402
            IFS+ASK G V LPESAYT VIRACC D RAD ARE LE LK+   KPR+RTY  LLE Y++LDGRL+DCM +WR+ VS P    Q +T++EREYL+LI ACTRARDEKCFLEVM EYM+DVLQPRSR SW+VLKAWF
Sbjct:  237 IFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQADLKPRVRTYTPLLEAYSKLDGRLEDCMTLWREAVSPPAGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKAWF 374
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BLAST of mRNA_D-dudresnayi_contig1034.363.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 5.860e-58
Identity = 99/140 (70.71%), Postives = 115/140 (82.14%), Query Frame = 1 
Query:    1 IFSEASKDGAVRLPESAYTGVIRACCLDDRADTAREMLEKLKKTGEKPRLRTYAALLETYARLDGRLQDCMGVWRDGVSSP----QSLTLSEREYLYLITACTRARDEKCFLEVMVEYMEDVLQPRSRQSWEVLKAWFEV 408
            IFS+ASK G V LPESAYT VIRACC D RAD ARE LE LK+ G KPR+RTY  LLE Y++LDGRL+DCM +WR+ VS P    Q +T++EREYL+LI ACTRARDEKCFLEVM EYM+DVLQPRSR SW+VLK+WF+V
Sbjct:  238 IFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQAGLKPRVRTYTPLLEAYSKLDGRLEDCMALWREAVSPPGGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKSWFKV 377
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1034.363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNK6_ECTSI2.500e-5871.01PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5LB75_9PHAE5.860e-5870.71Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1034contigD-dudresnayi_contig1034:21422..23098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue4e-08
Seed eggNOG ortholog67593.Physo136272
KEGG koko:K17655,ko:K18213
KEGG Pathwayko03013,map03013
EggNOG free text desc.Protein-only RNase P
EggNOG OGs3Q88N@4776,COG0534@1,KOG1347@2759
Ec32 ortholog descriptionRibonuclease Zc3h12a-like
Ec32 orthologEc-01_005100.1
EC3.1.26.5
COG Functional cat.V
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons3
Model size557
Cds size555
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1034.363.1prot_D-dudresnayi_contig1034.363.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1034 21422..23098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.2807572-CDS-D-dudresnayi_contig1034:21421..216591622927532.2807572-CDS-D-dudresnayi_contig1034:21421..21659Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 21422..21659 -
1690556795.848075-CDS-D-dudresnayi_contig1034:21421..216591690556795.848075-CDS-D-dudresnayi_contig1034:21421..21659Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 21422..21659 -
1622927532.2943842-CDS-D-dudresnayi_contig1034:22385..225501622927532.2943842-CDS-D-dudresnayi_contig1034:22385..22550Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 22386..22550 -
1690556795.8599875-CDS-D-dudresnayi_contig1034:22385..225501690556795.8599875-CDS-D-dudresnayi_contig1034:22385..22550Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 22386..22550 -
1622927532.3103788-CDS-D-dudresnayi_contig1034:22946..230981622927532.3103788-CDS-D-dudresnayi_contig1034:22946..23098Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 22947..23098 -
1690556795.8687913-CDS-D-dudresnayi_contig1034:22946..230981690556795.8687913-CDS-D-dudresnayi_contig1034:22946..23098Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 22947..23098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1034.363.1

>prot_D-dudresnayi_contig1034.363.1 ID=prot_D-dudresnayi_contig1034.363.1|Name=mRNA_D-dudresnayi_contig1034.363.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=185bp
IFSEASKDGAVRLPESAYTGVIRACCLDDRADTAREMLEKLKKTGEKPRL
RTYAALLETYARLDGRLQDCMGVWRDGVSSPQSLTLSEREYLYLITACTR
ARDEKCFLEVMVEYMEDVLQPRSRQSWEVLKAWFEVANEDCKEADTDTAA
VASEVEIKQQDAGAEQSVVARGSDADSKSGGGATE
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mRNA from alignment at D-dudresnayi_contig1034:21422..23098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1034.363.1 ID=mRNA_D-dudresnayi_contig1034.363.1|Name=mRNA_D-dudresnayi_contig1034.363.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1677bp|location=Sequence derived from alignment at D-dudresnayi_contig1034:21422..23098- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTTTTTCGGAGGCGTCCAAGGATGGTGCCGTACGCTTGCCCGAGTCAGC
GTACACCGGTGTCATTCGCGCGTGCTGTTTGGACGACCGAGCCGACACGG
CGCGAGAGATGCTCGAAAAACTCAAGAAGACGGGGGAGAAGCCACGCTTA
AGGTAAACGGTTGGGTATGTTACTGTTGCTGTGTGTACTCGAGTTACATT
TGTTTTCAACTACTGGCGGTCGTAGGAGTTTAGTCGGTGGAGTGCACAGC
GTTGCAGCGCTTGCAGTAGTATTGGAGTGTGTCTTTCCCGCTTCTGTATG
GCCCTTGGCGAGTAAAACACGTCCGCAGTGTTCTCTGCGATCGAATCCAC
ACTTCACGGCGGCTCCTTTGCCCCCCCCCCGTTTGTCACTTGCGCTTGCC
ATGGAAGTCACAGTTGCTATTATGGCGTTTTGCTGCCTAGCAGTAAAGTG
AAGTACGTCACTGTTGTGTTGTCAGTGTTCATTGCCGTCTCGTGCTTTTG
CGATGGCGATTGTCTTATGTTCCTCGTGGTGCTTCTGGTGTATGATAGGA
CGTACGCGGCGTTGCTCGAGACCTATGCGCGGCTTGACGGGCGACTGCAG
GACTGCATGGGCGTCTGGCGGGACGGCGTGTCGTCCCCTCAGAGCCTCAC
CTTGTCGGAAAGGGAGTACCTTTACCTCATCACGGCGTGCACCAGAGCGA
GAGACGAGAAATGGTGGGTACTTTTGGCTTTGGGTTGGGCGGAATTGTTG
TGCGTGGGAATTGGAGAACGCCCTGTTTTTTTCACGGCCAGCAGGTAGCG
GAGCCTGTGCTGGGTGTCAAAATAACAAACTGTAATGTCTGATGGCGATG
ATGTAGTTCCTTTTTGGAGGCTTTCGCCGGCGCGGTTACCCCTTCCTGGG
TGCGTTGCGTCGAAGTCAGCTCATGCAAGGGCTCGTGACCGGATGCATTT
GTTGTGTTGGTCCCATCGATCTCCATGTGCTTTGGTTGCGCGTTTATGCT
TTGTCAGTGCGTGGTAGCTTGGTGCTGGTGTTATGGCCGTGATGGACGTG
TATCGATTGTACATTTTACCGTGCGCGAGACACGCGAAACTTTTTTTTTT
TAAAGTTTCGGTTGACTCTAGGCAACAACGTTTCCTTTGCTTCCGCTCGG
TCGTGGATCGATTTTGCACCGCCGGGGTAAATTGCACTATCACGGGTTTA
GTTGAGGCGACAGTTGCTGCTTTTGCGTCCTTCTCGTCTAATGTTTTATC
TCGGTAGATGACCCGTCCGTACGGACTATCCACTTGTACTCTTATGATAG
CCCTGTAGGCAAGAGAGCTTGTTGGGCTTTCAACTCATCTCCCACTCTCC
TCTACATATATAGCGCATAGCGCAGCAATGGGTGTTGCGTGTTAAATTGC
TCATGAATAATTTTTCTGCCGTCCCGCGCATGCGATCAGTTTCCTCGAGG
TGATGGTGGAATATATGGAGGACGTGCTCCAGCCTCGAAGTCGACAGAGC
TGGGAGGTCCTCAAGGCGTGGTTTGAAGTGGCCAACGAAGACTGCAAAGA
AGCAGACACGGACACGGCGGCGGTGGCAAGCGAGGTCGAAATAAAACAGC
AAGACGCAGGGGCGGAGCAATCGGTCGTAGCAAGAGGATCGGACGCCGAC
AGCAAGTCGGGGGGTGGGGCAACCGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1034:21422..23098-

>mRNA_D-dudresnayi_contig1034.363.1 ID=mRNA_D-dudresnayi_contig1034.363.1|Name=mRNA_D-dudresnayi_contig1034.363.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at D-dudresnayi_contig1034:21422..23098- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTTTTTCGGAGGCGTCCAAGGATGGTGCCGTACGCTTGCCCGAGTCAGC
GTACACCGGTGTCATTCGCGCGTGCTGTTTGGACGACCGAGCCGACACGG
CGCGAGAGATGCTCGAAAAACTCAAGAAGACGGGGGAGAAGCCACGCTTA
AGATTTTTTCGGAGGCGTCCAAGGATGGTGCCGTACGCTTGCCCGAGTCA
GCGTACACCGGTGTCATTCGCGCGTGCTGTTTGGACGACCGAGCCGACAC
GGCGCGAGAGATGCTCGAAAAACTCAAGAAGACGGGGGAGAAGCCACGCT
TAAGGACGTACGCGGCGTTGCTCGAGACCTATGCGCGGCTTGACGGGCGA
CTGCAGGACTGCATGGGCGTCTGGCGGGACGGCGTGTCGTCCCCTCAGAG
CCTCACCTTGTCGGAAAGGGAGTACCTTTACCTCATCACGGCGTGCACCA
GAGCGAGAGACGAGAAATGGACGTACGCGGCGTTGCTCGAGACCTATGCG
CGGCTTGACGGGCGACTGCAGGACTGCATGGGCGTCTGGCGGGACGGCGT
GTCGTCCCCTCAGAGCCTCACCTTGTCGGAAAGGGAGTACCTTTACCTCA
TCACGGCGTGCACCAGAGCGAGAGACGAGAAATGTTTCCTCGAGGTGATG
GTGGAATATATGGAGGACGTGCTCCAGCCTCGAAGTCGACAGAGCTGGGA
GGTCCTCAAGGCGTGGTTTGAAGTGGCCAACGAAGACTGCAAAGAAGCAG
ACACGGACACGGCGGCGGTGGCAAGCGAGGTCGAAATAAAACAGCAAGAC
GCAGGGGCGGAGCAATCGGTCGTAGCAAGAGGATCGGACGCCGACAGCAA
GTCGGGGGGTGGGGCAACCGAGTTTCCTCGAGGTGATGGTGGAATATATG
GAGGACGTGCTCCAGCCTCGAAGTCGACAGAGCTGGGAGGTCCTCAAGGC
GTGGTTTGAAGTGGCCAACGAAGACTGCAAAGAAGCAGACACGGACACGG
CGGCGGTGGCAAGCGAGGTCGAAATAAAACAGCAAGACGCAGGGGCGGAG
CAATCGGTCGTAGCAAGAGGATCGGACGCCGACAGCAAGTCGGGGGGTGG
GGCAACCGAG
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