mRNA_D-dudresnayi_contig10338.360.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10338.360.1
Unique NamemRNA_D-dudresnayi_contig10338.360.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10338.360.1 vs. uniprot
Match: A0A6H5KUB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUB6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.240e-21
Identity = 57/89 (64.04%), Postives = 59/89 (66.29%), Query Frame = 3 
Query:  279 TRERGRLQGTAP--ASVSYAGGASEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIRGLHRNTMGFRRLALFLAF 539
            T   GRL   AP   S S        DV PTFD LDP VTAAIL QAAFRGYRLRERLR LPAREAE+ I GLH N  GFRR+ LFL F
Sbjct:   30 TSTGGRLSAQAPHGGSSSNXXXXXXXDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLF 118
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BLAST of mRNA_D-dudresnayi_contig10338.360.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.670e-21
Identity = 56/83 (67.47%), Postives = 62/83 (74.70%), Query Frame = 3 
Query:  291 GRLQGTAPASVSYAGGASEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIRGLHRNTMGFRRLALFLAF 539
            GRL   +P   S  G  S++DV PTFD+LDP VTAAIL QAAFRGYRLRERLR LPAREAE+ I GLH N  GFRR+ LFL F
Sbjct:   33 GRLSAKSPHG-SNGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLF 114
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BLAST of mRNA_D-dudresnayi_contig10338.360.1 vs. uniprot
Match: D7FTQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ5_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 6.420e-21
Identity = 57/85 (67.06%), Postives = 63/85 (74.12%), Query Frame = 3 
Query:  291 GRLQGTAPA--SVSYAGGASEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIRGLHRNTMGFRRLALFLAF 539
            GRL   AP   S S +G  S++DV PTFD LDP VTAAIL QAAFRGYRLRERLR LPAREAE+ I GL+ N  GFRR+ LFL F
Sbjct:   33 GRLSAQAPHGDSSSNSGIDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLYNNARGFRRVGLFLLF 117
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BLAST of mRNA_D-dudresnayi_contig10338.360.1 vs. uniprot
Match: A0A6H5L8A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 8.910e-21
Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 3 
Query:  321 VSYAGGASEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIRGLHRNTMGFRRLALFLAF 539
            +   G  S++DV PT+D LDP VTAAIL QAAFRGYRLRERLR LPAREAE+ I GLH N  GFRR+ LFL F
Sbjct:    2 IQTTGTESDSDVAPTYDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKQILGLHSNARGFRRVGLFLLF 74
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10338.360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KUB6_9PHAE1.240e-2164.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTQ4_ECTSI3.670e-2167.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTQ5_ECTSI6.420e-2167.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8A4_9PHAE8.910e-2168.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10338contigD-dudresnayi_contig10338:5742..10760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTransient Receptor Potential Channel
Ec32 orthologEc-06_009240.4
Exons3
Model size544
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10338.360.1prot_D-dudresnayi_contig10338.360.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10338 5742..9790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927531.974478-CDS-D-dudresnayi_contig10338:5741..58731622927531.974478-CDS-D-dudresnayi_contig10338:5741..5873Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10338 5742..5873 -
1690556795.68299-CDS-D-dudresnayi_contig10338:5741..58731690556795.68299-CDS-D-dudresnayi_contig10338:5741..5873Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10338 5742..5873 -
1622927531.990098-CDS-D-dudresnayi_contig10338:9565..97901622927531.990098-CDS-D-dudresnayi_contig10338:9565..9790Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10338 9566..9790 -
1690556795.6978474-CDS-D-dudresnayi_contig10338:9565..97901690556795.6978474-CDS-D-dudresnayi_contig10338:9565..9790Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10338 9566..9790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.0017736-UTR-D-dudresnayi_contig10338:9790..99061622927532.0017736-UTR-D-dudresnayi_contig10338:9790..9906Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10338 9791..9906 -
1690556795.7118316-UTR-D-dudresnayi_contig10338:9790..99061690556795.7118316-UTR-D-dudresnayi_contig10338:9790..9906Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10338 9791..9906 -
1622927532.0184207-UTR-D-dudresnayi_contig10338:10691..107601622927532.0184207-UTR-D-dudresnayi_contig10338:10691..10760Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10338 10692..10760 -
1690556795.7238407-UTR-D-dudresnayi_contig10338:10691..107601690556795.7238407-UTR-D-dudresnayi_contig10338:10691..10760Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10338 10692..10760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10338.360.1

>prot_D-dudresnayi_contig10338.360.1 ID=prot_D-dudresnayi_contig10338.360.1|Name=mRNA_D-dudresnayi_contig10338.360.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=119bp
MLGWFFYEEAEEETPQQQQQQQRGIQGGTDDTRERGRLQGTAPASVSYAG
GASEADVNPTFDDLDPVVTAAILTQAAFRGYRLRERLRGLPAREAERAIR
GLHRNTMGFRRLALFLAFF
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mRNA from alignment at D-dudresnayi_contig10338:5742..10760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10338.360.1 ID=mRNA_D-dudresnayi_contig10338.360.1|Name=mRNA_D-dudresnayi_contig10338.360.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=5019bp|location=Sequence derived from alignment at D-dudresnayi_contig10338:5742..10760- (Desmarestia dudresnayi DdudBR16 monoicous)
CAAACCTCGTCCTGTGTGCCGTGTCGGTGTATTGCGAGGGCTGGTGTGTC
CGTGTCTAAAAACCATCAGGTGGGAAGCATAGCTAGCATAGCAAGGTGTA
CATAGAGTCTAAGTTAAATAGCCTTGAGTGTACTTGCTACAATATACTGC
TGTTGTACTTCGAAGTATATAGCAGTAGCAATAAGCTAAAAAGAGAGGGA
CATGGTAACTCGGCACCTATGATACCTGCTGTGTGGGCATTTCGCCACGG
CTAGAGAGGGAGACAACAGTGTTGCACATGCGAGTGCATGTCGGATAACT
GATATCATAGCTGTCGTTGCAGTCTGTTTAGGTAGCAGTGATACGGCGTT
GCACTGCACAAGGTCGCCGACAATTTGCTTGTCATAGAGCCATATCATGT
AGACTATACCCACATGTACGTCAGTACTATTTCTGGTGCTACTACTACTG
TTGTACTACTACTGTTGTTGCTATCATCCTGCGCCCTGTCTGTTCGTCCT
CGTATGTTGTCCGCAACTACAGTATTAATAACTGCAGAGCAGGTTTGCAG
CAATGTTGTCGACGACGGACCAACTACTACTGTTGTTGTACTCCTGCCAA
CTCTGCTGTAGTAGATACTACTCGTACTGTGTCTAGACTATGGCAACAAG
TATCATAAGTTTTGTTTATGATACTACTTTTGAGCTATATAGAGGTGCTG
ACCAAAATAAATAACGTCCTGAGCTATTATATTATACGAGTACGATACTC
GTAGCTCCACATCTCCAAATGCAACACGTAACAGCAGTACGAGTGTACGA
GTACGTACAGCTCGTTCACTTCTCTCTGCTGGCATTTTATTTCTATTTTT
GCAGGGCGAGAGTGGACTTGAGCTGGATTATTCAGGGGTGCACCTTCAAC
AGTAATAACCTTTTTGTGATGATCGATAGGCGGCCTTCCCTTTGATTTGA
GTGTATTTTAATTCCACGAAATGCTGGGGTGGTTCTTCTATGAAGAGGCA
GAGGAGGAAACTCCGCAGCAGCAGCAGCAGCAGCAGCGTGGCATTCAGGG
TGGCACAGACGACACCAGGGAGAGAGGGCGGCTACAAGGCACTGCACCCG
CTTCTGTGTCCTATGCAGGCGGCGCCTCGGAAGCGGACGTGAATCCGACG
TTCGATGATCTGGATCCTGTAGTGACTGCCGCGATACTTACTCAGGTAGG
GGGCGGGGGCACTGGAAATTGGTGAAAAAAAAAAACGAAGATGCTAAACG
CCTCATTATGATGTCGGCCGATGCTGTGCGTAGACAGTACTACTACTGTA
GGTCCGGGCCATGAATTACGGCATACTACTGTATGTTATGTTGTGCACCG
GGTATGGAATATGGAATATGGGCTATCGATACAAGAGCGACACAGAGCAA
AGCCACGTTTCCTCGATTTATGCGCCGAAAAAGGCGTGGATTTTGGCCCC
GCCAAGTCGTAGGGGTACGGTTACGGTCGGGTTGGGTTGGCTCGGCACCA
ATTGAAATCAGCCAAATATTTCAACCATAGTTGTCGACAAAAACGGTATC
ATAGGACCTCATACGAAAGGCGATATATACATGTACATGAACGTTTTCTT
TAAAATATACAAGTAAAAGGTTTCTGCGGCTAACGCCGCCCCGCTCAACG
GAGCGATTCCAATATCCATGAACATGATGTCGTTCTTGTGTGTCATGTTG
AAAGCGTGATAAAAATGGAGTGTGTGTGCTGTTCCATGTGTCACCTATAT
ATATGTGTCTCTGTCTCTGTCTGGATGATTTTTGGAGGACATTCACGCCG
CAGGTTATGACGGGGTTGTAGAGGAAGATGTCCACGTGCATGTCCACATC
GTTTGATAACGTCATTGCTGATGTATTTGTAATATAAAATAAAAACAAAA
GTAAAGGTGTAGAAAGGCAAAGAGCACGGTTGAGAGGCCAAATGATTACT
CGCATGAAAAGCCTTTCTATTGGATATATTTTAGCTGTGGTCTATAAGTG
GTTACATTGTCGCTCCTGTTTTATCGCGAGAAGGGTGCAGCATTTTATCC
CCTCTTTGGGTTCACCGAATTGTGCTTGCTATCGCGCTCTCGCGCTCGCG
ACGAAAGATATGGCACAGAAAAAGGGCAATTTTGTTTGTCACCGGGATTC
GAACCCCGAACTTCCGCCAACTATGGTGATAATCAAACACCTCGCCTACT
TGCTGAACTTGTATATTGGTTGAACGCTTGTCTGTGGTGCATCCAGACGT
CAGAGATAATGTCTAGCAATGGTGAACTGGCCCGGTGGTGACTCTGTCCA
TGCTGCTCTGTGAGCCGTGGAGAAACTGCCAATGCTGTCTTCCTTGGTCT
AACGTAATCCGTATGATGTTAATAGTTAACATTGAAATTAACGTGATGTC
TGCAATGCTGCAATGTCTGCAATGCTGAGCTATTTGAATTATATTGAAAT
TAACGTGAAAAACTGCAATGCTGCAATGCTGAGCTGAGCAACGCTGAAAT
GTGTGGTCCGCTTCCTGCGCTCTGGCGTTTGTTTTGTAAATCGTAATATA
GTTAAAATACTATTACTTGTCTGTTGCCTTGTGTGTTGCGTACATACGCG
TAGGGGTACAGATTACAAGGTGTTAGGCGTTTAAAATGGATCTTTGGGGA
GTTTTTTTACTCCCTATTACTATAGGGTGTTGGTTGGGTTAGGGTTGGGG
TTACTTGTAGAAAATTTCCTACCTGCCTGCGTACCCCCACGTTCGTTCTA
CTTATCACATCATCGTATTACATAATACACGGAATCCCAACGGATAATTT
CTATCCTTTTCTAGTCCTACCTCGTATATAGTTCTCCTCTCGTCCCTCGA
CGCACGAGCACACAAGGCTATGCCCAGCGCGTTTTTTTGTGAACTTTTTG
GACTGCCATTCATGGCATGGTGTGTCACCTTCTGTCGCGTCGCTTCTCTC
ATGGGTGTCGTGTTGCGCTGCTGACAAGACAGTGGCGGCGCATGCCGTCG
GAGGTACCGTAGTGTTTTACCTACCAATTCTTGGACGAAAATGGTTGATG
CACTACGGTGTACGAGACAAGTATCAATCTGTGTGTTATTCGGTTAGGGT
TCGGGTTAGCTGTAGAGTTAGTCCGCCTTGTTATTATGCGGTTTTACACG
GTGGTGGATATCAATCATTCTTGTCGAAGAGTTGATAGACAACCCTCGTC
GTCGGAGGGGCAGTTGGTGGCGCCGGCAGGAGATCAACAAACCACACCCT
TGATACTCTCATAGAGTAGCGCTGTACGAATCAGTGTGCGACAACCAAAC
CAATATATGGCGCTTATATGACTGGCTGTTTCAGTGTCGATGGCGTAGTG
GAGGGGACACCATGTTACAACATGGAGCTCGACCAATCCTGGTAGCAAGA
GGGGCACGGTAGTGCGATCATTCACGACCCCTCCGTGCTGTGGTCTGTAC
CGTTCGTACTTATTCGGCAGCGGTGATGCCTGAACTACGGCATGGTATTA
TGTGATACTCCAAACGGCACCGATTGTTTTGGTATTGGAAAAAGAAACCG
AAAACAATAAAACAGCCTAACCAGACTTACGGTTCTGGAACAGGTTCTAG
TGGGGCATTTGTTTGTAATCAGTCGCGATAACTGGGGGGTTGTATTGTCA
CTGCATATACACATGCATTCGTACATGAATTGATCACTTCGCGCCTTTTC
ATAGCACGTCATAGATTAATACCATGGCATAATACATCGTAGGGGTTTTA
GTTGTTGTTGTTGTTGTTGTTGTCTTGACATTAAAAGTCGTCTTTTCTAC
CCTGCGACATCCAGTAGCTTACTCAGAGTCTGTACTGGATCTTTTATCCT
AGAGAGATACGAAATTCCATAGCCACAGGCTAGATGCGCACTCGTATTAT
CGCTGAATTGTGTCATGTTTTTGTCGAGCGTTTGCTCATGATGACGTCCC
CTTCCAACACAAATCAACCATATGGTTGACCATGTGCTTGCGGACCCAAG
TGTATATCTCATACTACACTAGTCGTAGCATGATCCTTCGGGTCGGTTCT
AGCTGGCAAAACAAAATCGTGAATCTTGACTAAAAAAAGTCAAGTTTCGT
GACCCTTCGGGTCGGTTCTAGCTGGCAAAACAAAATCGTGAATGACTCAA
AAAAAAACAAGTTTCGTGATTTTTCTTTGCCGGAAATCACGCTTGAAAGT
CATAAATCGTGGTTGCGGTTTACTTTCTCCTCCATTCTTGTTTCAATCCG
CTTGACAATCAATCACGTTTGTTTTACAGGGGGAGGGGGGGGAATCTGGG
TGTCGCACGTTTCTCTTTTTTTTGTTTTATGGTGTTATCTTGTCGTGACT
TTTTGTTTGTCGGTTAGAACATTAGAGCGACAGGTCATCCGGTGGCGGCA
AATTTGCCGTTTCTTTCTCGGGGCTTCCCTTTTTGATTATTGGTCAGTAC
TGGCGATAAAGGCGTTATTACATTATTATCGCACGACGGGACGCACGCGC
GGATTCATCTTCCTCTCCATGTCCCGAGTCTTTTCCATCACCTCTTCCAC
GCACACTCGCGTGACACTGACCACTGCAGCCTGGAGGTTACAAACGCCAC
CTTTATTGGAGGCGTTTCGACCAGAAGCGTTACGAATAAGCGTACCCGAC
GTAACCCCCCCCCCCCCCCCCCCCTCGAGTACAGATTACGAAGTGACAGA
AGGGATCTTTCGGGTTAGGGTTTATTTCTTGGAACTTTCCTACCTGCCTG
TGTACCCCATGTTCCTTACTATTCAGTACTACTGTATAGTAAACGCTACC
TACCCCCAAAGATCCAATATATTCCTTTGTAGTCCGACGACCTCCTCGCA
CGCGCCCCCCATCCCCTTGGTCGTTTTTTTTCTTCAGGCGGCCTTTCGAG
GCTATCGCCTGCGTGAGCGGTTGCGTGGGCTGCCCGCGCGAGAGGCGGAG
CGCGCGATACGGGGTTTGCACCGCAACACGATGGGATTCCGACGGCTAGC
GCTGTTTCTGGCTTTCTTC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10338:5742..10760-

>mRNA_D-dudresnayi_contig10338.360.1 ID=mRNA_D-dudresnayi_contig10338.360.1|Name=mRNA_D-dudresnayi_contig10338.360.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at D-dudresnayi_contig10338:5742..10760- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTGGGGTGGTTCTTCTATGAAGAGGCAGAGGAGGAAACTCCGCAGCA
GCAGCAGCAGCAGCAGCGTGGCATTCAGGGTGGCACAGACGACACCAGGG
AGAGAGGGCGGCTACAAGGCACTGCACCCGCTTCTGTGTCCTATGCAGGC
GGCGCCTCGGAAGCGGACGTGAATCCGACGTTCGATGATCTGGATCCTGT
AGTGACTGCCGCGATACTTACTCAGATGCTGGGGTGGTTCTTCTATGAAG
AGGCAGAGGAGGAAACTCCGCAGCAGCAGCAGCAGCAGCAGCGTGGCATT
CAGGGTGGCACAGACGACACCAGGGAGAGAGGGCGGCTACAAGGCACTGC
ACCCGCTTCTGTGTCCTATGCAGGCGGCGCCTCGGAAGCGGACGTGAATC
CGACGTTCGATGATCTGGATCCTGTAGTGACTGCCGCGATACTTACTCAG
GCGGCCTTTCGAGGCTATCGCCTGCGTGAGCGGTTGCGTGGGCTGCCCGC
GCGAGAGGCGGAGCGCGCGATACGGGGTTTGCACCGCAACACGATGGGAT
TCCGACGGCTAGCGCTGTTTCTGGCTTTCTTCGCGGCCTTTCGAGGCTAT
CGCCTGCGTGAGCGGTTGCGTGGGCTGCCCGCGCGAGAGGCGGAGCGCGC
GATACGGGGTTTGCACCGCAACACGATGGGATTCCGACGGCTAGCGCTGT
TTCTGGCTTTCTTC
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