mRNA_D-dudresnayi_contig10332.355.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10332.355.1
Unique NamemRNA_D-dudresnayi_contig10332.355.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: A0A7S3M2G8_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2G8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.880e-25
Identity = 43/66 (65.15%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  129 KSARFNTNIELTSNKVVHNVSLLPGEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVVTVPK 326
            ++ RFN  +++ S KVV N++L PGEKV+LCRCW S+KFPLCDG+HGK+NK +GDNLGPVVVTV +
Sbjct:   46 RAERFNKIVDVYSPKVVSNITLSPGEKVILCRCWLSSKFPLCDGSHGKHNKATGDNLGPVVVTVSQ 111          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: A0A482V1K5_9ARCH (CDGSH iron-sulfur domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1K5_9ARCH)

HSP 1 Score: 98.6 bits (244), Expect = 2.660e-24
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 3
Query:  132 SARFNTNIELTSNKVVHNVSLLPGEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVVTVPK 326
            +AR N  ++L+S KVV+ +SL PGEK V+CRCW+S+KFP CDGAH  +NK +GDNLGP ++TVPK
Sbjct:   46 NARINQKVDLSSEKVVNTISLKPGEKYVVCRCWQSSKFPACDGAHAAHNKRTGDNLGPCIITVPK 110          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: L1J777_GUITC (ZnF_CDGSH domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J777_GUITC)

HSP 1 Score: 85.9 bits (211), Expect = 7.370e-20
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  132 SARFNTNIELTSNKVVHNVSLLPGEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVVTVPK 326
            S + N  IEL + KV    ++ PG+KVV CRCW+SA FP CDGAH K+N+ +GDN+GP++V VPK
Sbjct:    2 SGKINHKIELDNPKVATTDTIEPGQKVVYCRCWKSATFPKCDGAHNKHNQETGDNVGPLIVNVPK 66          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: A0A4Y2TIV6_ARAVE (CDGSH iron-sulfur domain-containing protein 1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TIV6_ARAVE)

HSP 1 Score: 84.7 bits (208), Expect = 5.100e-19
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 3
Query:  129 KSARFNTNIELTSNKVVHNVSLLP-GEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVV 314
            K  R NT I+L SNKVVH+V +   G+K V CRCW+S KFP CDG+H K+N+ SGDN+GP++V
Sbjct:   32 KKKRVNTKIQLDSNKVVHSVDIEDVGKKTVFCRCWKSDKFPYCDGSHNKHNECSGDNVGPLIV 94          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: A0A7S2UEE3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEE3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.450e-18
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  138 RFNTNIELTSNKVVHNVSLLPGEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVVTVPK 326
            R NT ++L S KV     L PG K V CRCW+S  FPLCDG+H K+N+ +GDN+GP++V+VPK
Sbjct:   35 RINTQVDLDSPKVATMEKLEPGTKKVYCRCWQSGTFPLCDGSHMKHNEATGDNVGPLIVSVPK 97          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: A0A7S2TZX7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TZX7_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 5.470e-18
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  138 RFNTNIELTSNKVVHNVSLLPGEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVVTVPK 326
            R NT ++L S KVV    L  GEK V CRCW+S  FPLCDG H K+NK +GDN+GP++V+ PK
Sbjct:   86 RINTEVDLESPKVVTMEDLGKGEKKVFCRCWKSGTFPLCDGTHAKWNKETGDNVGPLIVSGPK 148          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: UPI000C77E8C3 (omega-amidase NIT2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77E8C3)

HSP 1 Score: 87.0 bits (214), Expect = 7.870e-18
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 3
Query:  132 SARFNTNIELTSNKVVHNVSLLP-GEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVV 314
            + R NT  +L S+KVV  V L   G++ V CRCW+SAKFPLCDG+HGKYNKG GDNLGP+++
Sbjct:  287 ATRLNTRYKLESSKVVDTVDLEDLGKRTVYCRCWQSAKFPLCDGSHGKYNKGCGDNLGPLII 348          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: A0A5A9NJS8_9TELE (CDGSH iron-sulfur domain-containing protein 1 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NJS8_9TELE)

HSP 1 Score: 81.6 bits (200), Expect = 1.780e-17
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  135 ARFNTNIELTSNKVVHNVSLLP-GEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVVT 317
            +R N  I + S KVVH+  +   G KV+ CRCWRS KFP CDG+HGK+NK +GDN+GP+++T
Sbjct:   56 SRINQTINIDSPKVVHSFDVEDMGNKVIYCRCWRSKKFPYCDGSHGKHNKETGDNIGPLIIT 117          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: A7LPG5_CAEEL (ZnF_CDGSH domain-containing protein n=2 Tax=Caenorhabditis elegans TaxID=6239 RepID=A7LPG5_CAEEL)

HSP 1 Score: 81.3 bits (199), Expect = 2.930e-17
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  129 KSARFNTNIELTSNKVVHNVSLLP-GEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVVTVPK 326
            +SAR N  I+L SNK+V  V +   GEK   CRCW+S K+P CDG+HGK+NK +GDN+GP++V   K
Sbjct:   67 RSARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPLIVKSEK 133          
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Match: A0A2G9TYI1_TELCI (Zinc finger CDGSH type (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TYI1_TELCI)

HSP 1 Score: 79.0 bits (193), Expect = 5.000e-17
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  126 IKSARFNTNIELTSNKVVHNVSLLP-GEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLGPVVV 314
            ++ AR N  I+L+++KVV  V +   GEK   CRCW+S KFP CDGAH K+NK +GDN+GP+VV
Sbjct:    7 MRRARVNAKIQLSNDKVVDTVDVEDIGEKKAFCRCWKSEKFPYCDGAHSKHNKETGDNVGPLVV 70          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10332.355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M2G8_9STRA1.880e-2565.15Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A482V1K5_9ARCH2.660e-2461.54CDGSH iron-sulfur domain-containing protein n=1 Ta... [more]
L1J777_GUITC7.370e-2055.38ZnF_CDGSH domain-containing protein n=2 Tax=Guilla... [more]
A0A4Y2TIV6_ARAVE5.100e-1958.73CDGSH iron-sulfur domain-containing protein 1 n=1 ... [more]
A0A7S2UEE3_9STRA1.450e-1855.56Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2TZX7_9EUKA5.470e-1857.14Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
UPI000C77E8C37.870e-1861.29omega-amidase NIT2-like n=1 Tax=Eurytemora affinis... [more]
A0A5A9NJS8_9TELE1.780e-1754.84CDGSH iron-sulfur domain-containing protein 1 n=1 ... [more]
A7LPG5_CAEEL2.930e-1753.73ZnF_CDGSH domain-containing protein n=2 Tax=Caenor... [more]
A0A2G9TYI1_TELCI5.000e-1754.69Zinc finger CDGSH type (Fragment) n=1 Tax=Teladors... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10332contigD-dudresnayi_contig10332:8557..8926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog55529.EKX43954
GOsGO:0000422,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0006914,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009894,GO:0009987,GO:0010150,GO:0010259,GO:0010506,GO:0012505,GO:0016020,GO:0016043,GO:0019222,GO:0019867,GO:0022411,GO:0031090,GO:0031323,GO:0031329,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0042175,GO:0042592,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048037,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051536,GO:0051537,GO:0051540,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0061726,GO:0061919,GO:0065007,GO:0065008,GO:0071840,GO:0072593,GO:0090693,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0099402,GO:1903008
EggNOG free text desc.2 iron, 2 sulfur cluster binding
EggNOG OGsKOG3461@1,KOG3461@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionIron sulphur-containing domain, CDGSH-type, subfamily
Ec32 orthologEc-06_006890.1
Exons1
Model size370
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10332.355.1prot_D-dudresnayi_contig10332.355.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10332 8559..8885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927531.514045-UTR-D-dudresnayi_contig10332:8556..85581622927531.514045-UTR-D-dudresnayi_contig10332:8556..8558Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10332 8557..8558 +
1690556795.376801-UTR-D-dudresnayi_contig10332:8556..85581690556795.376801-UTR-D-dudresnayi_contig10332:8556..8558Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10332 8557..8558 +
1622927531.5581114-UTR-D-dudresnayi_contig10332:8885..89261622927531.5581114-UTR-D-dudresnayi_contig10332:8885..8926Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10332 8886..8926 +
1690556795.3945005-UTR-D-dudresnayi_contig10332:8885..89261690556795.3945005-UTR-D-dudresnayi_contig10332:8885..8926Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10332 8886..8926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927531.5424674-CDS-D-dudresnayi_contig10332:8558..88851622927531.5424674-CDS-D-dudresnayi_contig10332:8558..8885Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10332 8559..8885 +
1690556795.386831-CDS-D-dudresnayi_contig10332:8558..88851690556795.386831-CDS-D-dudresnayi_contig10332:8558..8885Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10332 8559..8885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10332.355.1

>prot_D-dudresnayi_contig10332.355.1 ID=prot_D-dudresnayi_contig10332.355.1|Name=mRNA_D-dudresnayi_contig10332.355.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=109bp
MISIVLSSKLFVNTPRRLFKKTQPTTLFLSTQGDTIKDANPIKSARFNTN
IELTSNKVVHNVSLLPGEKVVLCRCWRSAKFPLCDGAHGKYNKGSGDNLG
PVVVTVPK*
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mRNA from alignment at D-dudresnayi_contig10332:8557..8926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10332.355.1 ID=mRNA_D-dudresnayi_contig10332.355.1|Name=mRNA_D-dudresnayi_contig10332.355.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=370bp|location=Sequence derived from alignment at D-dudresnayi_contig10332:8557..8926+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTATGATATCAATAGTTTTATCCTCGAAATTGTTTGTTAATACACCCCGT CGTCTTTTTAAAAAGACACAACCGACGACATTATTTCTATCCACTCAAGG AGATACTATCAAAGACGCAAATCCAATTAAATCTGCGAGATTTAACACGA ACATTGAACTTACTTCAAATAAAGTCGTGCACAATGTTTCTCTACTTCCA GGAGAAAAGGTGGTACTATGTAGGTGTTGGAGGAGCGCCAAGTTTCCTCT GTGTGATGGAGCGCATGGAAAGTACAACAAGGGATCCGGAGATAATTTGG GCCCTGTTGTTGTAACAGTACCTAAGTAACAATAACTTTTTTCTTCAATA ATATGAGTCACATACATTTT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10332:8557..8926+

>mRNA_D-dudresnayi_contig10332.355.1 ID=mRNA_D-dudresnayi_contig10332.355.1|Name=mRNA_D-dudresnayi_contig10332.355.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at D-dudresnayi_contig10332:8557..8926+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATATCAATAGTTTTATCCTCGAAATTGTTTGTTAATACACCCCGTCG
TCTTTTTAAAAAGACACAACCGACGACATTATTTCTATCCACTCAAGGAG
ATACTATCAAAGACGCAAATCCAATTAAATCTGCGAGATTTAACACGAAC
ATTGAACTTACTTCAAATAAAGTCGTGCACAATGTTTCTCTACTTCCAGG
AGAAAAGGTGGTACTATGTAGGTGTTGGAGGAGCGCCAAGTTTCCTCTGT
GTGATGGAGCGCATGGAAAGTACAACAAGGGATCCGGAGATAATTTGGGC
CCTGTTGTTGTAACAGTACCTAAGTAAATGATATCAATAGTTTTATCCTC
GAAATTGTTTGTTAATACACCCCGTCGTCTTTTTAAAAAGACACAACCGA
CGACATTATTTCTATCCACTCAAGGAGATACTATCAAAGACGCAAATCCA
ATTAAATCTGCGAGATTTAACACGAACATTGAACTTACTTCAAATAAAGT
CGTGCACAATGTTTCTCTACTTCCAGGAGAAAAGGTGGTACTATGTAGGT
GTTGGAGGAGCGCCAAGTTTCCTCTGTGTGATGGAGCGCATGGAAAGTAC
AACAAGGGATCCGGAGATAATTTGGGCCCTGTTGTTGTAACAGTACCTAA
GTAA
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