mRNA_D-dudresnayi_contig10332.354.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10332.354.1
Unique NamemRNA_D-dudresnayi_contig10332.354.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A482SUW2_9ARCH (Anoct_dimer domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUW2_9ARCH)

HSP 1 Score: 133 bits (334), Expect = 1.290e-33
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = -1
Query:   67 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDACVNLSCMSELQTTLGTIFLMRVTVGNLTELGIPMMETFWKQRQKNR 399
            A+QIQV N ++  VA++L D ENHRT+TE+ED+LIAKTF FQFVNSFASLFYIAFVKPFI DID CV  +CM ELQ++LGTIFL R+  G++ +L IP    ++ Q+QK +
Sbjct:  469 AVQIQVLNAIYNSVAIQLTDYENHRTNTEFEDSLIAKTFIFQFVNSFASLFYIAFVKPFIVDIDPCVG-TCMQELQSSLGTIFLTRLATGSVLKLLIP----YFTQKQKEK 574          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A812W9E1_SYMMI (Ano6 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W9E1_SYMMI)

HSP 1 Score: 118 bits (296), Expect = 2.010e-29
Identity = 63/103 (61.17%), Postives = 78/103 (75.73%), Query Frame = -1
Query:   91 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDACVNLSCMSELQTTLGTIFLMRVTVGNLTELGIPMMETF 399
            AIQIQV N ++  VA++L D ENHRTDT YED+LI KTF F FVNSFA+LFYIAFVKPFI  +D C+   CMSELQT LGTIFL R+ +G+  ++ IP +  +
Sbjct:  122 AIQIQVMNLIYGGVAIRLTDFENHRTDTAYEDSLIGKTFVFMFVNSFAALFYIAFVKPFIT-VDPCLG-PCMSELQTNLGTIFLSRLALGSTLKVVIPSLMNY 222          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: D8LEZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ6_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 4.630e-29
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = -1
Query:   58 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDACVNLSCMSELQTTLGTIFLMRVTVGNLTELGIPMMETFWKQRQKNREAD 399
            A+QIQV N  +  VA+KL D ENHRTDTEYED LIAKTF FQFVNS+ASL YIAF+K  I   + C+ +SCM+EL T L T+FL R+ VGNL+E+ +P+++   +QR++   +D
Sbjct:  378 AVQIQVMNAFYGTVAIKLTDLENHRTDTEYEDNLIAKTFMFQFVNSYASLVYIAFIKEIIG--NPCL-VSCMNELSTNLSTVFLARLAVGNLSEVVLPILKARRRQREETMGSD 488          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A835ZD27_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD27_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.150e-28
Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = -1
Query:    1 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDACVNLSCMSELQTTLGTIFLMRVTVGNLTELGIPMMETFWKQRQKNREADERFRKAGIADLRSVPNFSE 399
            A+QIQ+ N ++  VA+ LND ENHRTDT YED LIAKTF FQFVNS+ASL +IAF+KP     D CV+ +CM+EL T LG IFL R+ VGNLT++ +P+++    QR          R A   D   +P+ +E
Sbjct:  381 AVQIQIMNAIYGSVAIWLNDLENHRTDTAYEDNLIAKTFMFQFVNSYASLVWIAFIKPR----DKCVD-TCMNELATNLGAIFLTRLAVGNLTQVLLPLLKARALQR----------RSAAALDPERMPSIAE 498          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A7R9Y9L2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9L2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.440e-28
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = -1
Query:   61 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKP-FIADIDACVNLSCMSELQTTLGTIFLMRVTVGNLTELGIPMMETFWKQRQKNREA 399
            AIQIQ+ + ++  +A+KL D ENHRT T+YED LI K+F FQ VNS+A+L YIAFVK  F  D   C+N  C++EL T LGTI ++R+ VGN+ E+G+PM+  +W+ R   +EA
Sbjct:  454 AIQIQIMDMIYGAIAVKLTDGENHRTQTQYEDNLICKSFLFQCVNSYAALVYIAFVKDHFGPDSARCLNRDCLAELSTALGTILIVRLLVGNIQEIGVPMLLNWWRARAARKEA 567          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A7S1U393_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U393_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.960e-28
Identity = 56/115 (48.70%), Postives = 82/115 (71.30%), Query Frame = -1
Query:   58 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDA-CVNLSCMSELQTTLGTIFLMRVTVGNLTELGIPMMETFWKQRQKNREAD 399
            AIQIQ+ + ++  +A +L D ENHRT T+YED LI KTF+FQ VNS+ASL YIAF K    D  A C++  C++EL + LGTI ++R+ VGN+ E+G+PM+  +W+ R+  + A+
Sbjct:  405 AIQIQIMDMIYSHIAKRLTDAENHRTQTQYEDNLIGKTFAFQCVNSYASLVYIAFFKDHFGDTAARCIDRDCLAELSSVLGTILIVRLLVGNIQEIGVPMLMNWWRARKARKAAE 519          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A3R7G6E7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G6E7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.710e-27
Identity = 63/110 (57.27%), Postives = 75/110 (68.18%), Query Frame = -1
Query:   82 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDAC--VNLSCMSELQTTLGTIFLMRVTVGNLTELGIP--MMETFWKQ 399
            AIQI V N V+  VA +LN  ENHRTDTEYED LI KTF FQFVNS+ASLFY+AF+K  +   D+C  V   CM EL   LG IF +RVT GN  E+G+P  M +  W+Q
Sbjct:  250 AIQIMVMNNVYSTVAERLNRYENHRTDTEYEDHLIGKTFLFQFVNSYASLFYVAFIKTSVEGEDSCKPVEHGCMDELMMGLGIIFALRVTSGNFFEVGLPWIMKKLRWRQ 359          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A3F2RRK4_9STRA (Anoct_dimer domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRK4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.220e-27
Identity = 63/110 (57.27%), Postives = 75/110 (68.18%), Query Frame = -1
Query:   82 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDAC--VNLSCMSELQTTLGTIFLMRVTVGNLTELGIP--MMETFWKQ 399
            AIQI V N V+  VA +LN  ENHRTDTEYED LI KTF FQFVNS+ASLFY+AF+K  +   D+C  V   CM EL   LG IF +RVT GN  E+G+P  M +  W+Q
Sbjct:  422 AIQIMVMNNVYSTVAERLNRYENHRTDTEYEDHLIGKTFLFQFVNSYASLFYVAFIKTSVEGEDSCKPVEHGCMDELMMGLGIIFALRVTSGNFFEVGLPWIMKKLRWRQ 531          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A1V9ZZN0_9STRA (Anoct_dimer domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZN0_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.090e-27
Identity = 63/127 (49.61%), Postives = 84/127 (66.14%), Query Frame = -1
Query:   25 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDACVNLSCMSELQTTLGTIFLMRVTVGNLTELGIPMMETFWKQRQKNR--EADERFRKAGIADL 399
            A+QIQV NG++  +A++LN+ ENHRTDT+YED LIAKTF FQFVNS+ASLFYIAF+K ++    A  +  CM +L   LG IF +R+T GN  E  +P ++     + KNR  E D R   A  A +
Sbjct:  412 AVQIQVMNGIYMTIAVRLNNYENHRTDTQYEDNLIAKTFLFQFVNSYASLFYIAFIKFYVNGCSADASGGCMYDLMIALGIIFGLRLTSGNFFEAILPYIQRRLLAKLKNRPYEGDRRVVSAAEAQM 538          
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Match: A0A833WD05_PHYIN (Calcium-activated chloride channel n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WD05_PHYIN)

HSP 1 Score: 112 bits (280), Expect = 3.370e-26
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = -1
Query:   73 AIQIQVFNGVFQDVALKLNDKENHRTDTEYEDALIAKTFSFQFVNSFASLFYIAFVKPFIADIDACV--NLSCMSELQTTLGTIFLMRVTVGNLTELGIPMMETFWKQRQK 399
            AIQI V N V+  VA KLN  ENHRTDTEYED LI KTF FQFVNS+ASLFY+AF+K  +   ++C      CM EL  +LG IF++R+T GN  E G+P +    K+ +K
Sbjct:  420 AIQIMVMNNVYSTVAAKLNQFENHRTDTEYEDHLIGKTFLFQFVNSYASLFYVAFIKTSVEGHESCKPEGHGCMDELMMSLGIIFILRLTSGNFFEAGLPWIMKKLKRNKK 530          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10332.354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SUW2_9ARCH1.290e-3362.16Anoct_dimer domain-containing protein n=1 Tax=arch... [more]
A0A812W9E1_SYMMI2.010e-2961.17Ano6 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
D8LEZ6_ECTSI4.630e-2956.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZD27_9STRA4.150e-2850.38Calcium-activated chloride channel-domain-containi... [more]
A0A7R9Y9L2_9STRA4.440e-2851.75Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U393_9STRA5.960e-2848.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A3R7G6E7_9STRA3.710e-2757.27Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RRK4_9STRA5.220e-2757.27Anoct_dimer domain-containing protein n=1 Tax=Phyt... [more]
A0A1V9ZZN0_9STRA7.090e-2749.61Anoct_dimer domain-containing protein n=1 Tax=Thra... [more]
A0A833WD05_PHYIN3.370e-2654.05Calcium-activated chloride channel n=2 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10332contigD-dudresnayi_contig10332:6063..6464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size403
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927531.366693-CDS-D-dudresnayi_contig10332:6062..64641622927531.366693-CDS-D-dudresnayi_contig10332:6062..6464Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10332 6063..6464 +
1690556795.3469234-CDS-D-dudresnayi_contig10332:6062..64641690556795.3469234-CDS-D-dudresnayi_contig10332:6062..6464Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10332 6063..6464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10332.354.1prot_D-dudresnayi_contig10332.354.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10332 6063..6464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10332.354.1

>prot_D-dudresnayi_contig10332.354.1 ID=prot_D-dudresnayi_contig10332.354.1|Name=mRNA_D-dudresnayi_contig10332.354.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=134bp
LREVGHAAEVGDAGFAEALVSFSVLLALLPKRFHHWDAQLGQIAHGHAHQ
ENSAQSGLQLAHAGQVHTGVDISNEWLDKGDVEQGGKRVDELEAEGLGDE
RILVFGVRAVVLLVVQLKGDILEHPVEHLDLDG*
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mRNA from alignment at D-dudresnayi_contig10332:6063..6464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10332.354.1 ID=mRNA_D-dudresnayi_contig10332.354.1|Name=mRNA_D-dudresnayi_contig10332.354.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at D-dudresnayi_contig10332:6063..6464+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTCCGAGAAGTTGGGCACGCTGCGGAGGTCGGCGATGCCGGCTTTGCGGA AGCGCTCGTCAGCTTCTCGGTTCTTTTGGCGCTGCTTCCAAAACGTTTCC ATCATTGGGATGCCCAGCTCGGTCAGATTGCCCACGGTCACGCGCATCAG GAAAATAGTGCCCAGAGTGGTCTGCAGCTCGCTCATGCAGGACAGGTTCA CACAGGCGTCGATATCAGCAATGAATGGCTTGACAAAGGCGATGTAGAAC AAGGAGGCAAAAGAGTTGACGAACTGGAAGCTGAAGGTCTTGGCGATGAG CGCATCCTCGTATTCGGTGTCCGTGCGGTGGTTCTCCTTGTCGTTCAGCT TAAGGGCGACATCCTGGAACACCCCGTTGAACACCTGGATCTGGATGGCT AG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10332:6063..6464+

>mRNA_D-dudresnayi_contig10332.354.1 ID=mRNA_D-dudresnayi_contig10332.354.1|Name=mRNA_D-dudresnayi_contig10332.354.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at D-dudresnayi_contig10332:6063..6464+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTCCGAGAAGTTGGGCACGCTGCGGAGGTCGGCGATGCCGGCTTTGCGGA
AGCGCTCGTCAGCTTCTCGGTTCTTTTGGCGCTGCTTCCAAAACGTTTCC
ATCATTGGGATGCCCAGCTCGGTCAGATTGCCCACGGTCACGCGCATCAG
GAAAATAGTGCCCAGAGTGGTCTGCAGCTCGCTCATGCAGGACAGGTTCA
CACAGGCGTCGATATCAGCAATGAATGGCTTGACAAAGGCGATGTAGAAC
AAGGAGGCAAAAGAGTTGACGAACTGGAAGCTGAAGGTCTTGGCGATGAG
CGCATCCTCGTATTCGGTGTCCGTGCGGTGGTTCTCCTTGTCGTTCAGCT
TAAGGGCGACATCCTGGAACACCCCGTTGAACACCTGGATCTGGATGGCT
AGCTCCGAGAAGTTGGGCACGCTGCGGAGGTCGGCGATGCCGGCTTTGCG
GAAGCGCTCGTCAGCTTCTCGGTTCTTTTGGCGCTGCTTCCAAAACGTTT
CCATCATTGGGATGCCCAGCTCGGTCAGATTGCCCACGGTCACGCGCATC
AGGAAAATAGTGCCCAGAGTGGTCTGCAGCTCGCTCATGCAGGACAGGTT
CACACAGGCGTCGATATCAGCAATGAATGGCTTGACAAAGGCGATGTAGA
ACAAGGAGGCAAAAGAGTTGACGAACTGGAAGCTGAAGGTCTTGGCGATG
AGCGCATCCTCGTATTCGGTGTCCGTGCGGTGGTTCTCCTTGTCGTTCAG
CTTAAGGGCGACATCCTGGAACACCCCGTTGAACACCTGGATCTGGATGG
CTAG
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