mRNA_D-dudresnayi_contig10331.351.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10331.351.1
Unique NamemRNA_D-dudresnayi_contig10331.351.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10331.351.1 vs. uniprot
Match: D7FVB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB7_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 8.630e-26
Identity = 71/118 (60.17%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:  358 GALRMAENN--AMDAAAEEAKELNDKAAALHDEAAASEAAILPPDEEAAPTDEAEDAPEIRAEDTPPSQKISSNMKDRLTKELQSQGADPNKSAGNPILVVAALIGILVIVGGQGIFY 705
            GALRMA+ +  AM AA E AK L ++AAAL + AA SEA I P  ++A    E    P +R ED PP QKIS++M+ RL +EL SQGADPN+SAGNPILVVA +I +LVIVGGQGIFY
Sbjct:   26 GALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRPASDKADEVTETP-VPAVRPEDMPPKQKISNDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 142
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BLAST of mRNA_D-dudresnayi_contig10331.351.1 vs. uniprot
Match: A0A836CMY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.340e-13
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:  391 DAAAEEAKELNDKAAALHDEAAASEAAILPPDEEAAPTDEAEDAPEIRAEDTPPSQKISSNMKDRLTKELQSQGADPNKSAGNPILVVAALIGILVIVGGQGIFY 705
            D  A EA+ L+D+AA L +E AA E     P  +A P     DA E   E     +++S  MK +L KEL SQGADPN+S+GN IL+VAA+IG+LV++GGQGIFY
Sbjct:   53 DKGAAEAQRLSDQAAKLREEIAAMEGDRPKPAPKAEPVQAKADAEE---EAGFKEKELSEAMKAKLRKELISQGADPNRSSGNGILIVAAVIGVLVVLGGQGIFY 154
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BLAST of mRNA_D-dudresnayi_contig10331.351.1 vs. uniprot
Match: A0A7S2V2G0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.590e-11
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:  493 AAPTDEAEDA-PEIRAEDTPPSQKISSNMKDRLTKELQSQGADPNKSAGNPILVVAALIGILVIVGGQGIFY 705
            AAP  + E+  P ++ ++  P++ +S NMK++L +EL SQGADPN+++GNPIL+V A+I +LVI GGQGIFY
Sbjct:   80 AAPAKQEEEVVPLVKNQEYKPTE-MSENMKNKLRRELISQGADPNRASGNPILIVGAIIAVLVIAGGQGIFY 150
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BLAST of mRNA_D-dudresnayi_contig10331.351.1 vs. uniprot
Match: A0A7S4D594_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D594_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 1.680e-8
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  550 PSQKISSNMKDRLTKELQSQGADPNKSAGNPILVVAALIGILVIVGGQGIFY 705
            P  +ISS MK++L +EL++QGA+PNK+A NPIL+++ +I +LVI+ G GIFY
Sbjct:   98 PRVEISSAMKEKLRRELEAQGANPNKAAANPILIISGVIAVLVILAGGGIFY 149
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BLAST of mRNA_D-dudresnayi_contig10331.351.1 vs. uniprot
Match: A0A0G4H860_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H860_VITBC)

HSP 1 Score: 63.9 bits (154), Expect = 3.340e-8
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  562 ISSNMKDRLTKELQSQGADPNKSAGNPILVVAALIGILVIVGGQGIFY 705
            IS +MK RL +EL+ QGA+PNKS GNP L++  +I  LVI+GG+GIFY
Sbjct:  105 ISPDMKKRLLRELEGQGANPNKSRGNPYLIIFVIIAALVILGGKGIFY 152
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BLAST of mRNA_D-dudresnayi_contig10331.351.1 vs. uniprot
Match: W7TC08_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC08_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.950e-8
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  547 PPSQKISSNMKDRLTKELQSQGADPNKSAGNPILVVAALIGILVIVGGQGIFY 705
            PP   +S NM+ +L  E + QGAD N S GNPIL++A +IG+LV++GG+G FY
Sbjct:   81 PPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
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BLAST of mRNA_D-dudresnayi_contig10331.351.1 vs. uniprot
Match: A0A4D9CZL2_9STRA (Symplekin_C domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZL2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.260e-6
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  562 ISSNMKDRLTKELQSQGADPNKSAGNPILVVAALIGILVIVGGQGIFY 705
            +S NM+ +L  E + QGAD N S GNPIL++A +IG+LV++GG+G FY
Sbjct:  166 LSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 213
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10331.351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVB7_ECTSI8.630e-2660.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMY3_9STRA5.340e-1350.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2G0_9STRA3.590e-1152.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4D594_HETAK1.680e-855.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4H860_VITBC3.340e-860.42Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W7TC08_9STRA3.950e-852.83Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CZL2_9STRA1.260e-654.17Symplekin_C domain-containing protein n=2 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10331contigD-dudresnayi_contig10331:2..3828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3.7e-23
Seed eggNOG ortholog2880.D7FVB7
EggNOG OGs2BW48@1,2T009@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000510.1
Exons3
Model size2718
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10331.351.1prot_D-dudresnayi_contig10331.351.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10331 347..1818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927531.1120973-UTR-D-dudresnayi_contig10331:1..3461622927531.1120973-UTR-D-dudresnayi_contig10331:1..346Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10331 2..346 +
1690556795.2241442-UTR-D-dudresnayi_contig10331:1..3461690556795.2241442-UTR-D-dudresnayi_contig10331:1..346Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10331 2..346 +
1622927531.1874862-UTR-D-dudresnayi_contig10331:1818..38281622927531.1874862-UTR-D-dudresnayi_contig10331:1818..3828Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10331 1819..3828 +
1690556795.2697434-UTR-D-dudresnayi_contig10331:1818..38281690556795.2697434-UTR-D-dudresnayi_contig10331:1818..3828Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10331 1819..3828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927531.1347053-CDS-D-dudresnayi_contig10331:346..4491622927531.1347053-CDS-D-dudresnayi_contig10331:346..449Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10331 347..449 +
1690556795.2384505-CDS-D-dudresnayi_contig10331:346..4491690556795.2384505-CDS-D-dudresnayi_contig10331:346..449Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10331 347..449 +
1622927531.1512327-CDS-D-dudresnayi_contig10331:775..10211622927531.1512327-CDS-D-dudresnayi_contig10331:775..1021Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10331 776..1021 +
1690556795.2463865-CDS-D-dudresnayi_contig10331:775..10211690556795.2463865-CDS-D-dudresnayi_contig10331:775..1021Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10331 776..1021 +
1622927531.1626265-CDS-D-dudresnayi_contig10331:1804..18181622927531.1626265-CDS-D-dudresnayi_contig10331:1804..1818Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10331 1805..1818 +
1690556795.2542205-CDS-D-dudresnayi_contig10331:1804..18181690556795.2542205-CDS-D-dudresnayi_contig10331:1804..1818Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10331 1805..1818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10331.351.1

>prot_D-dudresnayi_contig10331.351.1 ID=prot_D-dudresnayi_contig10331.351.1|Name=mRNA_D-dudresnayi_contig10331.351.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=121bp
MRYFGALRMAENNAMDAAAEEAKELNDKAAALHDEAAASEAAILPPDEEA
APTDEAEDAPEIRAEDTPPSQKISSNMKDRLTKELQSQGADPNKSAGNPI
LVVAALIGILVIVGGQGIFY*
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mRNA from alignment at D-dudresnayi_contig10331:2..3828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10331.351.1 ID=mRNA_D-dudresnayi_contig10331.351.1|Name=mRNA_D-dudresnayi_contig10331.351.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3827bp|location=Sequence derived from alignment at D-dudresnayi_contig10331:2..3828+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCCTGTAGAGCCTGGGACCCCCTCAGGGGAGCCACTGCGTAATAACTTAT
CTGAGGACACATAGAATCCGCGCGACCGATGTATCACACAGTGAGGTTGA
CGATTATCCCCTGGCCCCCGAACCAGTTTGGAACGTCACGGCTGATATCT
TTGTAAGTAAAAATAAAAATATGTGTGAGGACTATTATACCATACTCGTA
AAATGCACGAAAGACCTGTCGCCTGTGATGTAGTGTTGGAATCGAGATCG
TAAACCTAGGTGGGCTCAAAGTTCACATGGGGGGTGCAAGCTCCCACACC
CTTCTACGCTCGCTGGCGAACCGTTGGTGATTCTACAGGCGCTCAATGAG
GTATTTTGGCGCCCTACGGATGGCCGAAAATAACGCTATGGATGCCGCCG
CGGAGGAAGCTAAGGAGCTCAACGACAAGGCGGCTGCTCTGCACGATGGT
TGGCTATTATTTGCTTCAATCGGTGCCCCCTTTGCAACATAGACATCGTA
CAGAGTACACCTCTACTTCGTATTTTCTATATTCTAGAGGCACAGTCGCC
ATATCTGCACAAGGCGAAGTACATGCATCTGTATATCCATAAGAGTGTAT
CGAGCTCTATGGGTGGCGTGCACCAGTCATAAAAAAATCGCCGAATCGCG
GAAACTCAGTTTGAAGCAGCTGCTGCACATGTGTTGTAACAATTGACCTA
CGGTAGATCTTTCACCAGTGATCTCATGTAACGGCTGTCAACCGGCTTGC
CCACCACGCCCTAACGATCCCCAGAGGCTGCTGCCAGCGAGGCCGCTATT
CTCCCCCCGGACGAGGAAGCCGCCCCAACCGACGAAGCTGAGGACGCACC
CGAAATCCGCGCGGAGGATACGCCTCCCTCTCAGAAAATCTCCAGCAACA
TGAAAGATCGCCTCACGAAGGAGCTCCAGTCGCAGGGTGCGGATCCGAAC
AAATCAGCCGGTAACCCCATTTTGGTCGTGGCAGCGCTCATTGGCATTCT
TGTCATCGTCGGAGGACAAGGTGAGACAGCTATTAATGTACTCGTAGTCT
TCGCGAAGGAGCTGTGCAGCGGGTGGTTCTATACTCTTTGCCACGTGTCT
GTTGTCGTGGGGTGCGATAATAATGATGCAGTACTCGTAGCAGCATGCGG
ATTCACAAGACGTAGGTTTTTTCTTCGGGATGTGTGAGATAGTGTGGTGG
AGGGCGCCCGGTTTCAGCGACAAACAAACGCAGCCATTCGTCCTGAATTG
ATAAATCCTGTTGCGAGCAATCCAAACGCCTCCCTTTGCTCTAAAAACGT
TTGTCTTAGTCAATGTGTATGGGTTCACCATTGAAAACTGCCTCATGCCA
TGCCATACCATGTTGTTGTTGTTGTGTTCACATTAAAACACTGCATGTTC
TACCCTACATCCAGCAGCGTATTCAGAGTATTTACGGATTCTTGTATTAT
AGAGAGACATTAAATCCCGCGGTCAACACCAAATCGAAAATTGAAACAAA
GAATAAGGAAATCGTCGAAAAAATAAGCAGAAATTCAAGATAAAACACAG
GAACGAAAACAGATGCAAGGATAAGAATAAGATAGGGAAGATAGGGAATC
AGAAGAAGGGGGGTTGGAATATTGAAGAAACCGCTCAACGAAATTGGGGA
TTATGAGTGTAGCTCTACGGCAACAGGAGAGATACGGAGGTATTGAGACG
CGCGAGAATAACTACGGTGTGCACAGTTAACATTGCCCTCCTCTTCGTTA
CCCCACCTCTCCCCGACATGGCTCGTTGCTCTCTCTTCCGCTGTGGATGC
CAGGTATTTTCTACTGAGGCATGGCCACCTCGCCATTCCCGCGCCATCCC
CTTGAAGCCGATCGCTGCGTTGGATTGTCGGTGTTGGGAGGGGGCGGCAA
TCGTTCCCAGTTGACCAACTCCGGTGACTTCAGCTGCTCACGCGTGCCAT
AGCCATGGTCATGGCGCACGGTGCTTACCACTTGCATTGGAAATAGTACT
CTTAATAGGTTCGGTCATACTCTCCTGCAGTGGGAGATGTCCTTTTCTAA
AACTTAACTGTCTGTTGAGGGCAGATCAAATGCGGTGTTGTCCGAGTGAC
CCCGCCCAGCCCGAGGAGGCAGGCGGAACTCTACAAGTGTGACCATGGCT
GTAGGATACGTAAGCCCGAAGCGGGTGGGGTCGGGGGGCTCAAGGCGCGT
GCCGTTTCCCTACGTATTTGACGGTCCAGCACTTTTTTGTTTATGTGGAC
TTACAAATTGGATTTGACGTGACATGTGATTCGTTGAGATGCGTGTCTTT
GTTTTGTTACCGATATATAGTTCGTTTTAACACCTTTGGAGACTGCAGTG
TATCGTAAGAGTACTGCATTTTGAAAAATGCGGCACGACGTGGAATGTAT
ATAGGAGGACACGGTAAATATTGAAATTGTGCGCCCTGAATACCAGGTAT
TGCTTAAATCTACCGTAGACGCATGCGGTTGGTCTCTAGGTGTTCGCAGG
AATCCTAAGGTGCGGTGACATGATCATATATGTATGTTAGCTTCGCATGC
GCAGTCGGCTCGAACAGATGGTAGATGTAGACGTAGAGGCGTGCTATTGG
TGCGGGAGGGTAATGGGTTGGTGGCATGAGTAGGAAAGCCATGCCGTGCA
CTTCGCGTTCCTTCCGTCAAGAGCTCCAGCGAAAGGAGTACGTCGTGGAA
TTCGGGTGAGATAAGAAACGTTAGCGCTTTTTTCGCAAGACTCTGGCTCA
CTAATGCAAGAGTTACCCTGCAGAGTAGTACTCGTACAGATTTGTGTGAT
ACGCTACGTCACCTGGAGGGAGAAGCAGCCATCCACATGTTTTTGCAGTG
GTGTTGAATGATGAATGACACGCCGGCGAGAGTACGTTTCCTTCGAAAGC
ACCAAGTCGTTCTTGTGCTTCCAAGTACCATACGCGATTTCATTGCAGGG
TCGCAAAAATAAAATAAAGGAGGAGACATGACTAACTGTAATACATACAT
GCTCTCGTACCACTTATATATCGCTACTTATATACTTCGTATCCAGGTAA
AAACACGTCCAATACAGTAGATAAAGACTACTTTTAAGCGGCAAGGTCCA
TAACAGTCGCGGATCACGGCATGCAGTTCACCGTACTCCGGTTGTCGGGG
TTTCATCGTACCTACAGTGATATTCTCGCGCTGGGCGCGTTCAGTAGCCA
TTTCGATCCGCAGCTGTTTCGACGAGTACATGTATCTCCTGCCACCGTCC
TTGACATGTCAGGCGTGTTTACACGTAAGCGCGTCGGCTACACGCAAAAA
AAAAAGACTTCTACACAAAACATATGGCACACAGCTCGAACAAGCGTGTT
TTGCGTTTAATTCCTCGCAGAAAGCCCTGGATGAGAACTCAGCTACGCGG
CGAGGACGGATTCAACGGAAAAATATGAGTTGTCAAATGCTCTTACCATA
TTACCATGGCACCTGGTACTTGGTGATAAAATTTACGCCTCTGGCAGGCA
AGGCGACGGTTTTGGCATGTAGTCTTGATTGACACCGTAAACTTGCCGTA
ACAAAAAAACAATAGACACGCACAAAACAGGAAAAACAGACTACCATATA
TAATTTTACACTACACGTAGCCGGTACACATCTCACCACTTCACTACAAG
ATATGCGAGGGGCCAACTGCTGCACAAGAAGACACTCGCGCGGGGCCAAG
CCGTTATTATTCAAAAACACGTGCTACGGATTTGCATCACAAAATGCGCC
TAAAACTGCCGCTAATAAAGGGTTCCCCGTGAAAACAGCATCGTGTGGAA
CACCCATAGATCGATGCAAGAATCCCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10331:2..3828+

>mRNA_D-dudresnayi_contig10331.351.1 ID=mRNA_D-dudresnayi_contig10331.351.1|Name=mRNA_D-dudresnayi_contig10331.351.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at D-dudresnayi_contig10331:2..3828+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGGTATTTTGGCGCCCTACGGATGGCCGAAAATAACGCTATGGATGC
CGCCGCGGAGGAAGCTAAGGAGCTCAACGACAAGGCGGCTGCTCTGCACG
ATGATGAGGTATTTTGGCGCCCTACGGATGGCCGAAAATAACGCTATGGA
TGCCGCCGCGGAGGAAGCTAAGGAGCTCAACGACAAGGCGGCTGCTCTGC
ACGATGAGGCTGCTGCCAGCGAGGCCGCTATTCTCCCCCCGGACGAGGAA
GCCGCCCCAACCGACGAAGCTGAGGACGCACCCGAAATCCGCGCGGAGGA
TACGCCTCCCTCTCAGAAAATCTCCAGCAACATGAAAGATCGCCTCACGA
AGGAGCTCCAGTCGCAGGGTGCGGATCCGAACAAATCAGCCGGTAACCCC
ATTTTGGTCGTGGCAGCGCTCATTGGCATTCTTGTCATCGTCGGAGGACA
AGAGGCTGCTGCCAGCGAGGCCGCTATTCTCCCCCCGGACGAGGAAGCCG
CCCCAACCGACGAAGCTGAGGACGCACCCGAAATCCGCGCGGAGGATACG
CCTCCCTCTCAGAAAATCTCCAGCAACATGAAAGATCGCCTCACGAAGGA
GCTCCAGTCGCAGGGTGCGGATCCGAACAAATCAGCCGGTAACCCCATTT
TGGTCGTGGCAGCGCTCATTGGCATTCTTGTCATCGTCGGAGGACAAGGT
ATTTTCTACTGAGTATTTTCTACTGA
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