mRNA_D-dudresnayi_contig10324.347.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10324.347.1
Unique NamemRNA_D-dudresnayi_contig10324.347.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10324.347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10324contigD-dudresnayi_contig10324:7296..10567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FWC7
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size350
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10324.347.1prot_D-dudresnayi_contig10324.347.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10324 7296..10567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.6971214-CDS-D-dudresnayi_contig10324:7295..73341622927530.6971214-CDS-D-dudresnayi_contig10324:7295..7334Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 7296..7334 +
1690556795.0736353-CDS-D-dudresnayi_contig10324:7295..73341690556795.0736353-CDS-D-dudresnayi_contig10324:7295..7334Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 7296..7334 +
1622927530.7150104-CDS-D-dudresnayi_contig10324:9645..98041622927530.7150104-CDS-D-dudresnayi_contig10324:9645..9804Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 9646..9804 +
1690556795.082969-CDS-D-dudresnayi_contig10324:9645..98041690556795.082969-CDS-D-dudresnayi_contig10324:9645..9804Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 9646..9804 +
1622927530.726871-CDS-D-dudresnayi_contig10324:10417..105671622927530.726871-CDS-D-dudresnayi_contig10324:10417..10567Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 10418..10567 +
1690556795.090244-CDS-D-dudresnayi_contig10324:10417..105671690556795.090244-CDS-D-dudresnayi_contig10324:10417..10567Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10324 10418..10567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10324.347.1

>prot_D-dudresnayi_contig10324.347.1 ID=prot_D-dudresnayi_contig10324.347.1|Name=mRNA_D-dudresnayi_contig10324.347.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=116bp
VLYSINELDPVPKIPYQDFFSDRIPLIPLVTLLADVQLCSKDTVEGKKKR
FYMSDHAYLFPTTIKNRLLQREAALEKIKAAAVPTMQFIPGRGLVTLPFL
LLRVNRERLLRETLSQ
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mRNA from alignment at D-dudresnayi_contig10324:7296..10567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10324.347.1 ID=mRNA_D-dudresnayi_contig10324.347.1|Name=mRNA_D-dudresnayi_contig10324.347.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3272bp|location=Sequence derived from alignment at D-dudresnayi_contig10324:7296..10567+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGCTGTACTCCATAAACGAGCTCGATCCTGTCCCGAAGGTGAGTCTTTG
CTGTTGATCATTTTCGGGAATATAGCCGTTGAAACAAACTTCTGCTGCTC
TATGATTTTGTTTTCGGGGCAGGGTTGGGGGTGCGGTATTGGGGGCCCGA
CATTGCACTCATCACGCGAGACGTAAATTAGGAGTGCTGCACGTCCCCGT
GCTTTATCGCTTTTTGTTTTTTTGTTAGTACCAAGCGAAACTTCTAGCGT
GTTCACCAACTCAATGCGTAGGTTCTACGATGAGAATCTTTGAATCTGGA
TAGCTCTAGACAATTATGTATATATTTGAGTACGAACATCTGTGGCGTGT
TTTTTCATTGATATGAAGAACATTTTGCGTCTATTTTCACTTTCCGAACG
TCACAATGGATTTTGCAAAATTTGTTTACTTTTTTCCCTTACAAAAGCCT
TGTTGTTTGCGCCGGAAATGGCATAGAAATGTGTACCGTTTCAAAACCGC
CACCTGAATAATCGAATTCCCCCCATAACATTCAACATAAGGATCGCACG
CACGCCAACTTAACCTTCACCGATGTGTTCCCCTTGTTCATGCGATGCAC
ACTCGACGTGCTCAGCGTCAAGGTATTCGAAGCATTCACCGAGAAAGATC
CCGAAGGCGGAATGTTATTCTTCTTCCAGGAATCAACTTGTAGCCCTAAT
AATTCGACGTGGTCGGCATCAAGTTATTCGAAGTATTCACCGAGAAAGGG
TGCCGAAGGCGGAACGTTCCTCTTCTTGCTGGAACCAGCTCGTAGCCCTG
ACCCTAGCCCCAGCGACCACACTATGTAATGGGGAGAGTAAAAACATTCT
TATATATCCTGCTTAAGTGATTTTTTCCTTCTCTCTTTTTTATATGTTTT
TTTGCGATTTGTTGTTTGGTGATATATGCCTGTGACCACGGAATTTCGTG
TCTTCTCTAGGATGGAAGATCCAGTACAGACTCTGAGTACGCTAATATTA
TACTGGATGCCATAGGGTAGAACGGACGACTTTTTAATGTGAAGGCAACA
ACAACAACAACAACAACAACGACAACGACAACGACAACAAAGTGATTGTA
AAACCTACTGGCATTCGGATACCCGAGACATTCTAATGGACTAATCTATG
GCAAAAAAATTAATACGTGTTTGACGTACTCGTATGCAAAAATGCGCGAG
AGCAAGGCTTGATAGGTTCGTAGTCACAGCTATCCTATTGAAAAGAGAAG
CAACTGCAAGAATTCAACAGTCGGCCGTGTTGCTTGGAACCCACGGTGGA
ATCACATGCTGCTAGAAAATATTGGTCCAAGGTGATGGGTACTTTGTTTT
CTAGAATACGAGACGGCCATATATATAGATGGTCGTTGTTGTATGATACG
GGGTTTTATATTATCCGTGTGAAACGAAACCTGTCCGGTGACAAAAACGC
CTCCTTATGGTGATCCGTCACGGCATTTGAAGATCCGAGTAGAAACCTCT
ACCTTATCGTCTCAGCCGAAACCCAACAAAGGCAGCAAGTAATACCCCGG
AGACTGCAAACGAGACGGAAAAGCCCGCCTGAAAAACATAGAGGCGCACT
TGACGTGCAACGCTTTCTCACCCCGCGTTTATGATGTACAGCCATTCTCC
CCCCAAGAAAGTACGCACAAGGTGCCGAAGTCCGCCGCACAAATGGTTCT
TACTAGGATGTAGCTCACCCTTCATGCGAATCGCCCAACACCTCACGGCG
CTCCGCGCTTAGTGCACGGCGATGCTTGCCTGGTCGGTGAAACCCGACGT
GCTCCGTCTCGGCATCGTAGGGATGCGAGGGTCTATGGTCAAAGACTACG
GTTATGCATGAAATGAATACCCCCCCCCCCCCCCCGCGCGCGCCCCGAGA
CGTCGTCCCTCCACCTACCTCTATGTTGGAACCTTTCCCCCTCCGCGACA
CGGTCAATGGCTACAGTAATAGGGTATGTTCGTGATTGTTTTGTGCTCAC
CCTTTGCCCACCTTATGCTCACCCTGTGCTCATTCTTTGTCCACTCTGTG
TGCCCTCTGTGTTCACTCTGAGTCAACTCTGTGTTAACCCTTTGTTACCC
TTGTGTTCATCCTGTGTTCACCCTGTGTTCACCCTGTGCCCACCCACCCC
TCCCCCATCCCCCGTCCCATATATGTCAATCACACACAGTTATTTCGTCA
GCTATGCTGTTTCTTTTGCTGTTATGTTGCTGGCAACGACATTTTCCTCC
ATGGTTCACGCCTCCCTAAGCAATGTGCCTCATGCGCTGCTGCTGCTAAT
GTCCTCGCGTTCGTGCGTGTCCCATCTGTCCGTCCGGTGCCGGCCACCAG
ATACCGTATCAAGATTTTTTCAGCGACAGGATACCGTTGATTCCGTTGGT
AACTCTGCTGGCGGATGTTCAGCTTTGCAGTAAGGACACGGTCGAAGGGA
AGAAGAAACGTTTCTACATGAGCGACCACGCGTACCTGTTCCCCACGACA
ATCAAGAATGTGCGTGTGTGTTGGCGATGGTAGAGCTAAATCATTGTGCT
GTGTTCGACTACGGTATGTTTAAGATGTGTTGACCGTGCTTTGTTAGGCT
TGTGTGCTGCAAGGACTACTGCTTATTGAGGCCGGCTTTGTCGTGTCTAG
TCGCGTCTTGTCTTTTTGGGTGGTGAGTTTGGTTTGGTTTGGTTTAGTGT
GGTTTGGCTTGGCTTGGCTTGGTCTGTTTTGGCTTGGTTTGGTTTGGTTT
GGTTTGGTTTGTTTTAAATGCCATTGTATTGTGTCGACTAAGCATGCGAT
ATATTGACTGTGCCATGTTCGACCTGCGTGCTGTGTGCTGCAAGAACTAC
TATTTGTAGTGGGCGTTTTATCGCGTCTTGTCTTGTCTTTTTGGGTGGTT
TGGTTTGGTTTGATTGGTTTGGTTTGGTTTGGTTTTATTTTGATCTGTTT
GGTTCGGTTCGGTTCGGTTCGGTTCGGCTCGGTTCGGTTTGATGATTCTG
CGGAATTTTTCGATTCGGTAATCACGTAAGACATGGCCGAACAATTGGAG
CTAAATTCGTTTCGTGCTACTACTTGCTGTACACCTTTCTCCCTGTGCCT
TGTGTCGCGCAATATACTACAGCGGCTGCTTCAAAGGGAAGCGGCGCTGG
AGAAGATTAAAGCGGCAGCGGTTCCGACCATGCAGTTCATCCCGGGCAGA
GGACTGGTAACGCTTCCATTCCTGCTGTTGCGGGTCAACAGGGAGAGGCT
CCTCCGAGAGACCCTGTCGCAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10324:7296..10567+

>mRNA_D-dudresnayi_contig10324.347.1 ID=mRNA_D-dudresnayi_contig10324.347.1|Name=mRNA_D-dudresnayi_contig10324.347.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at D-dudresnayi_contig10324:7296..10567+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGCTGTACTCCATAAACGAGCTCGATCCTGTCCCGAAGGTGCTGTACTC
CATAAACGAGCTCGATCCTGTCCCGAAGATACCGTATCAAGATTTTTTCA
GCGACAGGATACCGTTGATTCCGTTGGTAACTCTGCTGGCGGATGTTCAG
CTTTGCAGTAAGGACACGGTCGAAGGGAAGAAGAAACGTTTCTACATGAG
CGACCACGCGTACCTGTTCCCCACGACAATCAAGAATATACCGTATCAAG
ATTTTTTCAGCGACAGGATACCGTTGATTCCGTTGGTAACTCTGCTGGCG
GATGTTCAGCTTTGCAGTAAGGACACGGTCGAAGGGAAGAAGAAACGTTT
CTACATGAGCGACCACGCGTACCTGTTCCCCACGACAATCAAGAATCGGC
TGCTTCAAAGGGAAGCGGCGCTGGAGAAGATTAAAGCGGCAGCGGTTCCG
ACCATGCAGTTCATCCCGGGCAGAGGACTGGTAACGCTTCCATTCCTGCT
GTTGCGGGTCAACAGGGAGAGGCTCCTCCGAGAGACCCTGTCGCAGCGGC
TGCTTCAAAGGGAAGCGGCGCTGGAGAAGATTAAAGCGGCAGCGGTTCCG
ACCATGCAGTTCATCCCGGGCAGAGGACTGGTAACGCTTCCATTCCTGCT
GTTGCGGGTCAACAGGGAGAGGCTCCTCCGAGAGACCCTGTCGCAG
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