mRNA_D-dudresnayi_contig10318.342.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10318.342.1
Unique NamemRNA_D-dudresnayi_contig10318.342.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10318.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10318contigD-dudresnayi_contig10318:1094..1569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size276
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10318.342.1prot_D-dudresnayi_contig10318.342.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10318 1143..1516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.1533659-UTR-D-dudresnayi_contig10318:1093..11421622927530.1533659-UTR-D-dudresnayi_contig10318:1093..1142Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10318 1094..1142 -
1690556794.7760844-UTR-D-dudresnayi_contig10318:1093..11421690556794.7760844-UTR-D-dudresnayi_contig10318:1093..1142Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10318 1094..1142 -
1622927530.1990967-UTR-D-dudresnayi_contig10318:1516..15691622927530.1990967-UTR-D-dudresnayi_contig10318:1516..1569Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10318 1517..1569 -
1690556794.8004708-UTR-D-dudresnayi_contig10318:1516..15691690556794.8004708-UTR-D-dudresnayi_contig10318:1516..1569Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10318 1517..1569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.1671062-CDS-D-dudresnayi_contig10318:1142..11731622927530.1671062-CDS-D-dudresnayi_contig10318:1142..1173Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10318 1143..1173 -
1690556794.7837594-CDS-D-dudresnayi_contig10318:1142..11731690556794.7837594-CDS-D-dudresnayi_contig10318:1142..1173Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10318 1143..1173 -
1622927530.184543-CDS-D-dudresnayi_contig10318:1373..15161622927530.184543-CDS-D-dudresnayi_contig10318:1373..1516Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10318 1374..1516 -
1690556794.792981-CDS-D-dudresnayi_contig10318:1373..15161690556794.792981-CDS-D-dudresnayi_contig10318:1373..1516Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10318 1374..1516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10318.342.1

>prot_D-dudresnayi_contig10318.342.1 ID=prot_D-dudresnayi_contig10318.342.1|Name=mRNA_D-dudresnayi_contig10318.342.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=58bp
MGLIEERKLYRRRLYTVEALVSRARRCLKRDGAVAQRPALDNQLGSDMRN
ELNRQSV*
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mRNA from alignment at D-dudresnayi_contig10318:1094..1569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10318.342.1 ID=mRNA_D-dudresnayi_contig10318.342.1|Name=mRNA_D-dudresnayi_contig10318.342.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at D-dudresnayi_contig10318:1094..1569- (Desmarestia dudresnayi DdudBR16 monoicous)
CGTCACCTGGTCTCTTCAATATCCTACCTATTGCTTCGCCGCTCAACAAA
AATATGGGTTTGATCGAGGAGAGAAAACTCTACCGTCGCAGACTCTACAC
GGTAGAAGCTCTCGTCTCGAGGGCTCGGCGCTGCTTGAAGAGAGATGGAG
CGGTTGCTCAGAGGCCTGCTTTGGATAACCAACTGGGGTCGGACATGTGA
GCACGCGTGCATCAGGCTCAATACTTGTTGTGATTATTTTTTCAAACCGA
TATATTTCCGAACAGCCGCAATATTTTTTACCGGTTCGTGTCTTCAAACA
AAATGAAGAGCTCACTCTCAACTTTCCACTACTGTTTTTGCCACAACAAC
ACGGAAGACGCTTCCTGGACCACCTACTACCTATTATACGTTGCAGGAGG
AACGAGTTGAATCGACAGAGCGTGTGACAGCGGCACGCCGGCAGGAAAGC
GAAGAGGTACACATAGCTTTAACAGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10318:1094..1569-

>mRNA_D-dudresnayi_contig10318.342.1 ID=mRNA_D-dudresnayi_contig10318.342.1|Name=mRNA_D-dudresnayi_contig10318.342.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at D-dudresnayi_contig10318:1094..1569- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGTTTGATCGAGGAGAGAAAACTCTACCGTCGCAGACTCTACACGGT
AGAAGCTCTCGTCTCGAGGGCTCGGCGCTGCTTGAAGAGAGATGGAGCGG
TTGCTCAGAGGCCTGCTTTGGATAACCAACTGGGGTCGGACATATGGGTT
TGATCGAGGAGAGAAAACTCTACCGTCGCAGACTCTACACGGTAGAAGCT
CTCGTCTCGAGGGCTCGGCGCTGCTTGAAGAGAGATGGAGCGGTTGCTCA
GAGGCCTGCTTTGGATAACCAACTGGGGTCGGACATGAGGAACGAGTTGA
ATCGACAGAGCGTGTGAGAGGAACGAGTTGAATCGACAGAGCGTGTGA
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