mRNA_D-dudresnayi_contig1031.339.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1031.339.1
Unique NamemRNA_D-dudresnayi_contig1031.339.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.560e-22
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   22 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct:  161 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: A0A1E5WJJ4_9POAL (Uncharacterized protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5WJJ4_9POAL)

HSP 1 Score: 88.6 bits (218), Expect = 4.810e-22
Identity = 41/53 (77.36%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 SVVMVWQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            ++  ++QDEVLI+GFGR+GHAVGDIPGVRFKVVKV+GV+LLAL+K+KKEKPRS
Sbjct:   16 NMTYLFQDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 68
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: A0A0W8DH21_PHYNI (Actin-depolymerizing factor 10 n=5 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DH21_PHYNI)

HSP 1 Score: 89.4 bits (220), Expect = 7.090e-22
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   22 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:   63 DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 108
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 90.9 bits (224), Expect = 8.430e-22
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   22 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            DEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:  123 DEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: D0NJX8_PHYIT (40S ribosomal protein S23, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NJX8_PHYIT)

HSP 1 Score: 89.4 bits (220), Expect = 8.820e-22
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   22 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:   71 DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 116
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: A0A199UY41_ANACO (40S ribosomal protein S23-1 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UY41_ANACO)

HSP 1 Score: 87.4 bits (215), Expect = 1.210e-21
Identity = 41/47 (87.23%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   19 QDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            QDEVLI+GFGR+GHAVGDIPGVRFKVVKV+GV+LLAL+K+KKEKPRS
Sbjct:    9 QDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 55
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: A0A5B8MU16_9CHLO (Hypothetical protein n=3 Tax=Chloropicon TaxID=2302914 RepID=A0A5B8MU16_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 1.760e-21
Identity = 42/46 (91.30%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   22 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            DEVL+SGFGRRGHAVGDIPGVRFK+VKVAGVALLAL+K+KKEKPRS
Sbjct:   97 DEVLVSGFGRRGHAVGDIPGVRFKIVKVAGVALLALFKEKKEKPRS 142
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.900e-21
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   22 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:  100 DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: A0A5D6XQ53_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ53_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.030e-21
Identity = 42/46 (91.30%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   22 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            DEVLI+GFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:   63 DEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 108
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BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.820e-21
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:   22 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 159
            DEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct:  100 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1031.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUM9_ECTSI2.560e-22100.00Ribosomal protein S23, component of cytosolic 80S ... [more]
A0A1E5WJJ4_9POAL4.810e-2277.36Uncharacterized protein n=1 Tax=Dichanthelium olig... [more]
A0A0W8DH21_PHYNI7.090e-2293.48Actin-depolymerizing factor 10 n=5 Tax=Peronospora... [more]
A0A4W5LQ08_9TELE8.430e-2295.6540S ribosomal protein S23 n=31 Tax=Eukaryota TaxID... [more]
D0NJX8_PHYIT8.820e-2293.4840S ribosomal protein S23, putative n=1 Tax=Phytop... [more]
A0A199UY41_ANACO1.210e-2187.2340S ribosomal protein S23-1 n=1 Tax=Ananas comosus... [more]
A0A5B8MU16_9CHLO1.760e-2191.30Hypothetical protein n=3 Tax=Chloropicon TaxID=230... [more]
M4BPE8_HYAAE1.900e-2193.48Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A5D6XQ53_9STRA2.030e-2191.30Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A835Z8V8_9STRA3.820e-2193.48Putative ribosomal protein S23 n=1 Tax=Tribonema m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1031contigD-dudresnayi_contig1031:27230..27391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue5.8e-18
Seed eggNOG ortholog2880.D7FUM9
Preferred nameRPS23
KEGG koko:K02973,ko:K03124
KEGG Pathwayko03010,ko03022,ko05169,ko05203,map03010,map03022,map05169,map05203
KEGG ModuleM00177
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001666,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006606,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030490,GO:0030867,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034063,GO:0034248,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0036293,GO:0036294,GO:0042175,GO:0042221,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0090304,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990145,GO:1990904,GO:2000112,GO:2000638,GO:2000640,GO:2001141
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1749@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size153
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.961585-UTR-D-dudresnayi_contig1031:27229..272381622927529.961585-UTR-D-dudresnayi_contig1031:27229..27238Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1031 27230..27238 +
1690556794.6885564-UTR-D-dudresnayi_contig1031:27229..272381690556794.6885564-UTR-D-dudresnayi_contig1031:27229..27238Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1031 27230..27238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.9710698-CDS-D-dudresnayi_contig1031:27238..273911622927529.9710698-CDS-D-dudresnayi_contig1031:27238..27391Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1031 27239..27391 +
1690556794.710411-CDS-D-dudresnayi_contig1031:27238..273911690556794.710411-CDS-D-dudresnayi_contig1031:27238..27391Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1031 27239..27391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1031.339.1prot_D-dudresnayi_contig1031.339.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1031 27239..27391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1031.339.1

>prot_D-dudresnayi_contig1031.339.1 ID=prot_D-dudresnayi_contig1031.339.1|Name=mRNA_D-dudresnayi_contig1031.339.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=51bp
MVWQDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
*
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mRNA from alignment at D-dudresnayi_contig1031:27230..27391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1031.339.1 ID=mRNA_D-dudresnayi_contig1031.339.1|Name=mRNA_D-dudresnayi_contig1031.339.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at D-dudresnayi_contig1031:27230..27391+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCCGTTGTGATGGTGTGGCAGGACGAAGTTCTTATCTCCGGGTTCGGTCG
CCGCGGACACGCCGTGGGTGATATCCCCGGTGTCCGGTTCAAGGTGGTCA
AGGTGGCGGGTGTTGCCCTTTTGGCTCTGTACAAGGACAAGAAGGAGAAG
CCCCGCTCTTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1031:27230..27391+

>mRNA_D-dudresnayi_contig1031.339.1 ID=mRNA_D-dudresnayi_contig1031.339.1|Name=mRNA_D-dudresnayi_contig1031.339.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at D-dudresnayi_contig1031:27230..27391+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGTGGCAGGACGAAGTTCTTATCTCCGGGTTCGGTCGCCGCGGACA
CGCCGTGGGTGATATCCCCGGTGTCCGGTTCAAGGTGGTCAAGGTGGCGG
GTGTTGCCCTTTTGGCTCTGTACAAGGACAAGAAGGAGAAGCCCCGCTCT
TAGATGGTGTGGCAGGACGAAGTTCTTATCTCCGGGTTCGGTCGCCGCGG
ACACGCCGTGGGTGATATCCCCGGTGTCCGGTTCAAGGTGGTCAAGGTGG
CGGGTGTTGCCCTTTTGGCTCTGTACAAGGACAAGAAGGAGAAGCCCCGC
TCTTAG
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