mRNA_D-dudresnayi_contig10301.331.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10301.331.1
Unique NamemRNA_D-dudresnayi_contig10301.331.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10301.331.1 vs. uniprot
Match: A0A482RSB7_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSB7_9ARCH)

HSP 1 Score: 174 bits (442), Expect = 4.100e-50
Identity = 87/147 (59.18%), Postives = 114/147 (77.55%), Query Frame = 1
Query:    1 EAILHQLCGNMLNIMFHNGLRLEVVDESTRAMLVGRFFATVNITSCTLQCLVLPHVLSHSTLPTVLKKIPLLVLAAVCLGIINPGLVSVMLGFGSIKVLEYSILHSASQLIYMPLGQDVRYLGKELVRFFGHKLGKSGSSLILSALI 441
            EA+ HQLC NMLNIMFHNGLR   VD+  +A LVGRFFATVNI   +LQCLVLP +LS            ++VL +V +G++ P + +VM+GFGS+KVLEYS++++AS++IY+PLG +VRYLGKEL++FFGHKLGKS SS+I+S  I
Sbjct:  166 EAVCHQLCTNMLNIMFHNGLRESAVDDEMKAKLVGRFFATVNIIVVSLQCLVLPSILSXXXXXXXXXXXXVVVLFSVSVGMVYPSVTAVMIGFGSMKVLEYSVMNAASEMIYVPLGHEVRYLGKELIKFFGHKLGKSLSSVIISTAI 312          
BLAST of mRNA_D-dudresnayi_contig10301.331.1 vs. uniprot
Match: A0A7S1BRI7_9STRA (ADP,ATP carrier protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRI7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.120e-19
Identity = 54/149 (36.24%), Postives = 90/149 (60.40%), Query Frame = 1
Query:    1 EAILHQLCGNMLNIMFHNGLRLEVVDESTRAMLVGRFFATVNITSCTLQCLVLPHVLSHSTLPTVLKKIPLLVLA---AVCLGIINPGLVSVMLGFGSIKVLEYSILHSASQLIYMPLGQDVRYLGKELVRFFGHKLGKSGSSLILSAL 438
            E +  Q   ++LN+MF   L   V ++  RA   G+F+A++N+ SC LQ  +LP V+ +     + + +P +++    A+C+   +P L  V   F  +K LEYSI    ++++Y+PL  + RYLGKE++  F ++LGKSG+SL+LS L
Sbjct:  317 ETLACQSLSSVLNVMFFRRLTESVPNDGERAGWTGKFYASINVVSCVLQFGILPAVMKYVDPAMMWRAMPTVMMTFATAMCVSK-DPSLHLVGASFLVMKSLEYSIRGVVNEMVYVPLDFESRYLGKEVIGVFAYRLGKSGTSLLLSGL 464          
BLAST of mRNA_D-dudresnayi_contig10301.331.1 vs. uniprot
Match: A0A7S4EQV7_9STRA (ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EQV7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.010e-16
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 EAILHQLCGNMLNIMFHNGLRLEVVDESTRAMLVGRFFATVNITSCTLQCLVLPHVLSHST-------LPTVLKKIPLLVLAAVCLGIINPGLVSVMLGFGSIKVLEYSILHSASQLIYMPLGQDVRYLGKELVRFFGHKLGKSGSSLILSAL 438
            E I  Q    +LNI F   L+  +  +  RA   G+F+A VN  S  +Q  +LP +  +         LP +L   PLL  AAV     N GL      F ++K  +YSI   A++L Y PL  D R+LGKE++  F ++ GKSG+S+ILSAL
Sbjct:  436 EVIAFQSLSTVLNICFVRQLKASMPVDGDRAAFTGQFYAGVNGISGAMQFFILPLLRKYLEPQWIYRFLPIILM--PLLTYAAVVPASANSGLWIAAASFFALKSTDYSIRGVATELTYQPLDFDARFLGKEVIGVFANRFGKSGTSMILSAL 586          
BLAST of mRNA_D-dudresnayi_contig10301.331.1 vs. uniprot
Match: A0A448YY85_9STRA (ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY85_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.730e-15
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query:    1 EAILHQLCGNMLNIMFHNGLRLEVVDESTRAMLVGRFFATVNITSCTLQCLVLPHVLSHSTLPTVLKKIPLLVLAAVCLGIINP----GLVSVMLGFGSIKVLEYSILHSASQLIYMPLGQDVRYLGKELVRFFGHKLGKSGSSLILSAL 438
            E I  Q    +LN+ F   L+  +  +  RA   G+F+A VN  S  +Q  VLP +  +     + + +P++++  +    + P    GL    + F ++K  +YSI   A++L Y PL  D RYLGKE++  F ++ GKSG+S+ILSAL
Sbjct:  441 EVIAFQSLSTVLNVCFVRQLKESMPIDGERAAFTGQFYAGVNGISGLMQFFVLPLLRKYLEPQWIYRLLPMVLMPLLTYAAVGPSANNGLWIAAVSFFALKSTDYSIRGVATELAYQPLDFDARYLGKEVIGVFANRFGKSGTSMILSAL 590          
BLAST of mRNA_D-dudresnayi_contig10301.331.1 vs. uniprot
Match: A0A7S1GKX0_CYCTE (ADP,ATP carrier protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GKX0_CYCTE)

HSP 1 Score: 76.3 bits (186), Expect = 3.730e-14
Identity = 45/148 (30.41%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    1 EAILHQLCGNMLNIMFHNGLRLEVVDESTRAMLVGRFFATVNITSCTLQCLVLPHVLSHSTLPTVLKKIPLLVLAAVCLGII--NPGLVSVMLGFGSIKVLEYSILHSASQLIYMPLGQDVRYLGKELVRFFGHKLGKSGSSLILSAL 438
            E +  Q    +LN+ F   L+  ++D++ RA    +F+A +N  S   Q +++P  +       + K +P++ + A  +  +  NP L  + L F S K ++YS+    +++IY+PL  + RY+GKE++  F ++ GKS  S+ LSAL
Sbjct:   13 EVLSFQSFSTVLNVCFVGSLKSTILDDTQRAAWTNKFYAGINAVSGMFQFVIMPLFMKMVEPKMIWKLLPIIPVLASLVSALQPNPSLRLLALAFFSAKCIDYSLRGVVTEMIYVPLDFESRYVGKEVIGVFANRFGKSVVSVGLSAL 160          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10301.331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A482RSB7_9ARCH4.100e-5059.18Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S1BRI7_9STRA9.120e-1936.24ADP,ATP carrier protein n=2 Tax=Corethron hystrix ... [more]
A0A7S4EQV7_9STRA5.010e-1637.91ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia a... [more]
A0A448YY85_9STRA1.730e-1534.00ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1GKX0_CYCTE3.730e-1430.41ADP,ATP carrier protein n=1 Tax=Cyclophora tenuis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10301contigD-dudresnayi_contig10301:10108..10551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue3.1e-13
Seed eggNOG ortholog159749.K0RUJ5
Preferred nameNTT6
EggNOG free text desc.TLC ATP/ADP transporter
EggNOG OGs2CHKX@1,2SD3X@2759,2XAW7@2836
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.3616467-CDS-D-dudresnayi_contig10301:10107..105211622927529.3616467-CDS-D-dudresnayi_contig10301:10107..10521Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10301 10108..10521 -
1690556794.3552716-CDS-D-dudresnayi_contig10301:10107..105211690556794.3552716-CDS-D-dudresnayi_contig10301:10107..10521Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10301 10108..10521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.377281-UTR-D-dudresnayi_contig10301:10521..105511622927529.377281-UTR-D-dudresnayi_contig10301:10521..10551Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10301 10522..10551 -
1690556794.3690047-UTR-D-dudresnayi_contig10301:10521..105511690556794.3690047-UTR-D-dudresnayi_contig10301:10521..10551Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10301 10522..10551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10301.331.1prot_D-dudresnayi_contig10301.331.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10301 10108..10521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10301.331.1

>prot_D-dudresnayi_contig10301.331.1 ID=prot_D-dudresnayi_contig10301.331.1|Name=mRNA_D-dudresnayi_contig10301.331.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=138bp
MLNIMFHNGLRLEVVDESTRAMLVGRFFATVNITSCTLQCLVLPHVLSHS
TLPTVLKKIPLLVLAAVCLGIINPGLVSVMLGFGSIKVLEYSILHSASQL
IYMPLGQDVRYLGKELVRFFGHKLGKSGSSLILSALIS
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mRNA from alignment at D-dudresnayi_contig10301:10108..10551-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10301.331.1 ID=mRNA_D-dudresnayi_contig10301.331.1|Name=mRNA_D-dudresnayi_contig10301.331.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at D-dudresnayi_contig10301:10108..10551- (Desmarestia dudresnayi DdudBR16 monoicous)
GAAGCTATACTGCATCAATTGTGTGGGAACATGCTAAATATCATGTTTCA TAATGGTTTGCGTTTGGAAGTGGTAGATGAGAGCACACGTGCCATGTTGG TGGGACGCTTCTTTGCAACTGTGAATATTACCTCCTGTACACTACAGTGC TTAGTTCTACCACATGTACTGTCTCATAGTACGTTACCGACTGTTTTGAA AAAGATCCCACTCCTAGTGCTGGCTGCGGTGTGCTTAGGGATAATTAACC CTGGACTGGTCTCGGTGATGCTGGGCTTTGGTTCGATCAAAGTACTGGAG TACTCGATCCTGCACTCTGCGAGTCAGCTGATCTACATGCCACTGGGCCA GGACGTGCGTTATCTTGGTAAGGAGCTGGTGCGGTTCTTCGGACATAAGT TAGGCAAGTCCGGGTCGTCTCTGATACTGTCTGCGCTGATATCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10301:10108..10551-

>mRNA_D-dudresnayi_contig10301.331.1 ID=mRNA_D-dudresnayi_contig10301.331.1|Name=mRNA_D-dudresnayi_contig10301.331.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at D-dudresnayi_contig10301:10108..10551- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTAAATATCATGTTTCATAATGGTTTGCGTTTGGAAGTGGTAGATGA
GAGCACACGTGCCATGTTGGTGGGACGCTTCTTTGCAACTGTGAATATTA
CCTCCTGTACACTACAGTGCTTAGTTCTACCACATGTACTGTCTCATAGT
ACGTTACCGACTGTTTTGAAAAAGATCCCACTCCTAGTGCTGGCTGCGGT
GTGCTTAGGGATAATTAACCCTGGACTGGTCTCGGTGATGCTGGGCTTTG
GTTCGATCAAAGTACTGGAGTACTCGATCCTGCACTCTGCGAGTCAGCTG
ATCTACATGCCACTGGGCCAGGACGTGCGTTATCTTGGTAAGGAGCTGGT
GCGGTTCTTCGGACATAAGTTAGGCAAGTCCGGGTCGTCTCTGATACTGT
CTGCGCTGATATCCATGCTAAATATCATGTTTCATAATGGTTTGCGTTTG
GAAGTGGTAGATGAGAGCACACGTGCCATGTTGGTGGGACGCTTCTTTGC
AACTGTGAATATTACCTCCTGTACACTACAGTGCTTAGTTCTACCACATG
TACTGTCTCATAGTACGTTACCGACTGTTTTGAAAAAGATCCCACTCCTA
GTGCTGGCTGCGGTGTGCTTAGGGATAATTAACCCTGGACTGGTCTCGGT
GATGCTGGGCTTTGGTTCGATCAAAGTACTGGAGTACTCGATCCTGCACT
CTGCGAGTCAGCTGATCTACATGCCACTGGGCCAGGACGTGCGTTATCTT
GGTAAGGAGCTGGTGCGGTTCTTCGGACATAAGTTAGGCAAGTCCGGGTC
GTCTCTGATACTGTCTGCGCTGATATCC
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