mRNA_D-dudresnayi_contig10301.329.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10301.329.1
Unique NamemRNA_D-dudresnayi_contig10301.329.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A7S2SM18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM18_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.940e-39
Identity = 69/122 (56.56%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKINDKDQ----HSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGSADLAKARSSVRE 354
            CNCK SKCLKLYCDCFA   YC+G CNC DC N+ E E+ RQ+A ++T E+N  AFQ KI    Q    HS+GCHCK S+CLKKYCEC+    FCG  CKCL C N+AGS  L + ++  R+
Sbjct:   27 CNCKNSKCLKLYCDCFASSIYCNG-CNCKDCHNNPEHEAERQDARQSTLEKNPNAFQAKIKKGGQGGSEHSSGCHCKKSKCLKKYCECFEALVFCGEKCKCLDCENYAGSIALQERKAKCRD 147          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A7S3QG23_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QG23_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.830e-38
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKINDKDQ--HSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGSADLAKARSSVRE 354
            CNCKKSKCLKLYC+CF+   YC+G CNC DC N+A  E++RQ+AI+ TK +N  AFQ+K N K+   H++GC CK S CLKKYCEC+ GG  CGS CKC++C NF GSA L   R  +++
Sbjct:  653 CNCKKSKCLKLYCECFSASIYCNG-CNCNDCHNTAAYENLRQKAIKDTKAKNPSAFQSKTNSKESATHTSGCKCKKSACLKKYCECFEGGIMCGSKCKCVNCQNFTGSAQLIARRRKIKD 771          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A7S3YLM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLM9_HETAK)

HSP 1 Score: 132 bits (333), Expect = 6.370e-37
Identity = 64/106 (60.38%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKIN----DKDQHSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLN 306
            CNCKKSKCLKLYC+CFA   YC G+CNC DC N+   E+ RQ+AI+A  ERN  AF +KIN     K  HSTGC+CK S CLKKYCEC+  G  C + CKC +CLN
Sbjct:   46 CNCKKSKCLKLYCECFAAGKYC-GACNCVDCQNAPATEAQRQDAIKAILERNPKAFSSKINREALHKQHHSTGCNCKKSSCLKKYCECFQAGVPCSARCKCAACLN 150          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A5J4YAE3_9CHLO (CRC domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAE3_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 1.930e-34
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKIN----------DKDQHSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGS 318
            CNCK S+CLKLYC+CFA   YC G CNC +CCN+ E ES RQ A+ A  ERN  AF+ KI              +H+ GC+CK S CLKKYCEC+  G +CG NCKC+ C NF GS
Sbjct:   63 CNCKNSRCLKLYCECFASGRYCDG-CNCVNCCNNMENESTRQSAVEAILERNPNAFRPKIQAGASEEGTVAGTARHNKGCNCKKSGCLKKYCECFQAGIYCGDNCKCIDCKNFEGS 177          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A6J0JCG7_RAPSA (protein tesmin/TSO1-like CXC 7 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JCG7_RAPSA)

HSP 1 Score: 129 bits (325), Expect = 8.880e-34
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKI--------NDKDQHSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGSADLAKAR 339
            C CK S+CLKLYC+CFA  +YC+G CNC +C N+ E+E+ RQEA+ A  ERN  AF+ KI        NDK +HS GCHC+ S CLKKYCECY     C  NC C  C NF GS ++   R
Sbjct:   93 CKCKASRCLKLYCECFASGSYCNG-CNCLNCHNTLEKETERQEAVMAILERNRDAFKLKIAGSPHGLMNDKQEHSRGCHCRRSGCLKKYCECYQANIRCSENCTCRDCKNFEGSEEILLTR 212          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A7S3ZVE2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVE2_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.140e-33
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKINDKDQHSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGSADLAKARSSVR 351
            CNC+ S+CLKLYCDCFA   +C G CNC DC N       R EAIRAT E+N  AF+ K+ D   H++GCHCK S+CLKKYCEC+  G  CG+ CKC  C N+ GS  L   R+ ++
Sbjct:  392 CNCRNSRCLKLYCDCFAAGRWCKG-CNCVDCHNDLAHAKERDEAIRATLEKNPKAFRAKVKD-TAHASGCHCKKSKCLKKYCECFEAGIHCGAKCKCADCENYEGSVQLEARRAKLK 506          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A2I0AU71_9ASPA (Protein tesmin/TSO1-like CXC 5 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AU71_9ASPA)

HSP 1 Score: 131 bits (329), Expect = 1.920e-33
Identity = 65/125 (52.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKINDKDQ-----------------HSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGSAD 324
            CNC+ SKCLKLYC+CFA   YC+G CNC +CCN+AE E+VR+EAI +T ERN  AF+ KI +  Q                 H+ GCHCK S CLK+YCEC+     C  NCKC+ C NF GS D
Sbjct:   80 CNCRNSKCLKLYCECFASGVYCNG-CNCSNCCNNAENEAVRREAIESTLERNPNAFRPKIANSPQPVQDSKVEVGELPFVVKHNKGCHCKKSGCLKRYCECFQANILCSENCKCVDCRNFDGSED 203          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: K8EHS0_9CHLO (Unnamed protein product n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EHS0_9CHLO)

HSP 1 Score: 127 bits (318), Expect = 2.990e-33
Identity = 63/125 (50.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKI-------NDKDQHSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGSADLAKARSSVRE 354
            CNC+ S+CLKLYC+CFA   YC  +CNC +C N+ E    RQEA+ AT ERN  AF+ K+          ++H+ GCHCK S CLKKYCEC+    FC   C+CL C NF GS D  KA +S +E
Sbjct:   23 CNCRNSRCLKLYCECFASGQYCLQNCNCVECKNNVENSVQRQEAVEATLERNPNAFRPKVLPTLNGGEGDEKHNKGCHCKKSGCLKKYCECFQASIFCSDMCRCLDCKNFEGS-DAHKAIASQQE 146          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A7S2KIH0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KIH0_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.480e-33
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKINDKD-------QHSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGSADLAKARSSVRE 354
            CNCK+S+CLKLYCDCFA + +C+G CNC DC N+ +    R EAI+ T+ +N  AF+ +  DK        QHS GC CK S CLK+YCEC+     CGSNCKC+ C NF GS  L   R  +++
Sbjct:   52 CNCKRSQCLKLYCDCFAMLRFCNG-CNCTDCKNTPDSGPERDEAIKQTRAKNPNAFKERFVDKQKAANSSTQHSLGCKCKKSSCLKRYCECFQATVMCGSNCKCVDCKNFLGSQQLIDRRRKIKD 175          
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Match: A0A804IIX2_MUSAM (CRC domain-containing protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804IIX2_MUSAM)

HSP 1 Score: 126 bits (316), Expect = 3.980e-33
Identity = 61/122 (50.00%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKERNALAFQTKINDKD----------------QHSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSCLNFAGS 318
            CNCK S+CLKLYC+CFA   YC G CNC +CCN+ E E+ R +A+ AT ERN  AF+ KI                    +H+ GCHCK S CLKKYCEC+     C  NCKC+ C NF GS
Sbjct:  102 CNCKHSRCLKLYCECFASGVYCDG-CNCTNCCNNVENEAARHDAVEATLERNPNAFRPKIGSSPHATRDIRDEVGELLVGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGS 222          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10301.329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SM18_9STRA3.940e-3956.56Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3QG23_9STRA4.830e-3857.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3YLM9_HETAK6.370e-3760.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5J4YAE3_9CHLO1.930e-3454.31CRC domain-containing protein n=1 Tax=Trebouxia sp... [more]
A0A6J0JCG7_RAPSA8.880e-3452.89protein tesmin/TSO1-like CXC 7 n=1 Tax=Raphanus sa... [more]
A0A7S3ZVE2_9STRA1.140e-3352.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2I0AU71_9ASPA1.920e-3352.00Protein tesmin/TSO1-like CXC 5 n=1 Tax=Apostasia s... [more]
K8EHS0_9CHLO2.990e-3350.40Unnamed protein product n=1 Tax=Bathycoccus prasin... [more]
A0A7S2KIH0_9STRA3.480e-3349.60Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A804IIX2_MUSAM3.980e-3350.00CRC domain-containing protein n=1 Tax=Musa acumina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10301contigD-dudresnayi_contig10301:761..1114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score130.6
Seed ortholog evalue4.9e-28
Seed eggNOG ortholog3218.PP1S10_254V6.2
KEGG koko:K21776
KEGG Pathwayko04218,map04218
EggNOG free text desc.tesmin TSO1-like CXC
EggNOG OGs37NS8@33090,3GBJB@35493,KOG1171@1,KOG1171@2759
COG Functional cat.P
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.2251003-CDS-D-dudresnayi_contig10301:760..11141622927529.2251003-CDS-D-dudresnayi_contig10301:760..1114Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10301 761..1114 +
1690556794.2969205-CDS-D-dudresnayi_contig10301:760..11141690556794.2969205-CDS-D-dudresnayi_contig10301:760..1114Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10301 761..1114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10301.329.1prot_D-dudresnayi_contig10301.329.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10301 761..1114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10301.329.1

>prot_D-dudresnayi_contig10301.329.1 ID=prot_D-dudresnayi_contig10301.329.1|Name=mRNA_D-dudresnayi_contig10301.329.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=118bp
CNCKKSKCLKLYCDCFAGMNYCSGSCNCFDCCNSAERESVRQEAIRATKE
RNALAFQTKINDKDQHSTGCHCKNSQCLKKYCECYTGGAFCGSNCKCLSC
LNFAGSADLAKARSSVRE
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mRNA from alignment at D-dudresnayi_contig10301:761..1114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10301.329.1 ID=mRNA_D-dudresnayi_contig10301.329.1|Name=mRNA_D-dudresnayi_contig10301.329.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at D-dudresnayi_contig10301:761..1114+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGTAACTGCAAGAAATCCAAGTGTTTGAAGCTGTATTGTGATTGCTTTGC TGGTATGAACTACTGCAGTGGTAGTTGTAATTGCTTCGACTGCTGTAACT CCGCAGAGAGAGAAAGCGTCCGCCAAGAGGCGATTCGTGCCACTAAGGAG CGCAATGCACTAGCTTTCCAGACGAAGATAAACGATAAAGACCAGCATAG TACAGGTTGCCACTGTAAAAACTCACAATGTCTCAAGAAATACTGTGAAT GTTATACTGGTGGTGCATTCTGTGGTAGTAACTGCAAATGTTTATCTTGT TTGAACTTTGCTGGTTCAGCAGATCTGGCCAAGGCTCGCAGCAGTGTCCG AGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10301:761..1114+

>mRNA_D-dudresnayi_contig10301.329.1 ID=mRNA_D-dudresnayi_contig10301.329.1|Name=mRNA_D-dudresnayi_contig10301.329.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at D-dudresnayi_contig10301:761..1114+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGTAACTGCAAGAAATCCAAGTGTTTGAAGCTGTATTGTGATTGCTTTGC
TGGTATGAACTACTGCAGTGGTAGTTGTAATTGCTTCGACTGCTGTAACT
CCGCAGAGAGAGAAAGCGTCCGCCAAGAGGCGATTCGTGCCACTAAGGAG
CGCAATGCACTAGCTTTCCAGACGAAGATAAACGATAAAGACCAGCATAG
TACAGGTTGCCACTGTAAAAACTCACAATGTCTCAAGAAATACTGTGAAT
GTTATACTGGTGGTGCATTCTGTGGTAGTAACTGCAAATGTTTATCTTGT
TTGAACTTTGCTGGTTCAGCAGATCTGGCCAAGGCTCGCAGCAGTGTCCG
AGAGTGTAACTGCAAGAAATCCAAGTGTTTGAAGCTGTATTGTGATTGCT
TTGCTGGTATGAACTACTGCAGTGGTAGTTGTAATTGCTTCGACTGCTGT
AACTCCGCAGAGAGAGAAAGCGTCCGCCAAGAGGCGATTCGTGCCACTAA
GGAGCGCAATGCACTAGCTTTCCAGACGAAGATAAACGATAAAGACCAGC
ATAGTACAGGTTGCCACTGTAAAAACTCACAATGTCTCAAGAAATACTGT
GAATGTTATACTGGTGGTGCATTCTGTGGTAGTAACTGCAAATGTTTATC
TTGTTTGAACTTTGCTGGTTCAGCAGATCTGGCCAAGGCTCGCAGCAGTG
TCCGAGAG
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