mRNA_D-dudresnayi_contig103.327.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig103.327.1
Unique NamemRNA_D-dudresnayi_contig103.327.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig103.327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig103contigD-dudresnayi_contig103:56339..56758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.5499272-CDS-D-dudresnayi_contig103:56338..566741622927528.5499272-CDS-D-dudresnayi_contig103:56338..56674Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig103 56339..56674 +
1690556793.8552907-CDS-D-dudresnayi_contig103:56338..566741690556793.8552907-CDS-D-dudresnayi_contig103:56338..56674Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig103 56339..56674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.5669255-UTR-D-dudresnayi_contig103:56674..567581622927528.5669255-UTR-D-dudresnayi_contig103:56674..56758Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig103 56675..56758 +
1690556793.8677013-UTR-D-dudresnayi_contig103:56674..567581690556793.8677013-UTR-D-dudresnayi_contig103:56674..56758Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig103 56675..56758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig103.327.1prot_D-dudresnayi_contig103.327.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig103 56339..56674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig103.327.1

>prot_D-dudresnayi_contig103.327.1 ID=prot_D-dudresnayi_contig103.327.1|Name=mRNA_D-dudresnayi_contig103.327.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=112bp
WHRYRYTSPHRHPSPYGYPSLYRCYPSLHRAASPRRTWTGSISTCSAPRQ
SSTPGGLAPWHQGSRGLSSFAQPPCCTRRWLRGELAAPIGLDTALERCMS
SPAPPRQVPKG*
back to top

mRNA from alignment at D-dudresnayi_contig103:56339..56758+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig103.327.1 ID=mRNA_D-dudresnayi_contig103.327.1|Name=mRNA_D-dudresnayi_contig103.327.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at D-dudresnayi_contig103:56339..56758+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGGCACCGCTACCGCTACACCTCTCCGCACCGCCACCCCTCCCCGTACGG
TTACCCCTCCCTGTACCGCTGTTACCCCTCCCTGCACCGCGCAGCGTCTC
CGAGGCGTACTTGGACAGGTTCAATAAGTACTTGTTCAGCCCCGAGGCAG
TCATCGACCCCAGGAGGTTTAGCGCCTTGGCACCAGGGGTCTCGAGGTCT
ATCAAGTTTTGCACAACCACCTTGTTGTACTCGAAGGTGGCTTCGGGGAG
AACTTGCGGCTCCGATAGGTCTTGACACTGCGCTCGAGCGATGCATGTCT
TCACCAGCTCCACCTCGTCAGGTGCCGAAGGGGTGACGGTTACCATCACC
ACATCCGGCCTCCTGTAGATGGAACCCCGTTCGCGATGGCCACCAATAGG
GGGGTGAGAAGTGGCGGGCT
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig103:56339..56758+

>mRNA_D-dudresnayi_contig103.327.1 ID=mRNA_D-dudresnayi_contig103.327.1|Name=mRNA_D-dudresnayi_contig103.327.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at D-dudresnayi_contig103:56339..56758+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGGCACCGCTACCGCTACACCTCTCCGCACCGCCACCCCTCCCCGTACGG
TTACCCCTCCCTGTACCGCTGTTACCCCTCCCTGCACCGCGCAGCGTCTC
CGAGGCGTACTTGGACAGGTTCAATAAGTACTTGTTCAGCCCCGAGGCAG
TCATCGACCCCAGGAGGTTTAGCGCCTTGGCACCAGGGGTCTCGAGGTCT
ATCAAGTTTTGCACAACCACCTTGTTGTACTCGAAGGTGGCTTCGGGGAG
AACTTGCGGCTCCGATAGGTCTTGACACTGCGCTCGAGCGATGCATGTCT
TCACCAGCTCCACCTCGTCAGGTGCCGAAGGGGTGATGGCACCGCTACCG
CTACACCTCTCCGCACCGCCACCCCTCCCCGTACGGTTACCCCTCCCTGT
ACCGCTGTTACCCCTCCCTGCACCGCGCAGCGTCTCCGAGGCGTACTTGG
ACAGGTTCAATAAGTACTTGTTCAGCCCCGAGGCAGTCATCGACCCCAGG
AGGTTTAGCGCCTTGGCACCAGGGGTCTCGAGGTCTATCAAGTTTTGCAC
AACCACCTTGTTGTACTCGAAGGTGGCTTCGGGGAGAACTTGCGGCTCCG
ATAGGTCTTGACACTGCGCTCGAGCGATGCATGTCTTCACCAGCTCCACC
TCGTCAGGTGCCGAAGGGGTGA
back to top