mRNA_D-dudresnayi_contig10246.291.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10246.291.1
Unique NamemRNA_D-dudresnayi_contig10246.291.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10246.291.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 5.360e-17
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  248 PPDVPAGDMAAPTEETRRAEPERSAEDKLLLACCRAIRKESGWQHRTLRQACDWATSELERNQHPGTGL 454
            P +   G   +  +++   +P    EDKLLLA CR IRKE+GWQ RTLRQACDWAT ELE+NQHPG G+
Sbjct:   13 PTESDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWATGELEQNQHPGVGM 81
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BLAST of mRNA_D-dudresnayi_contig10246.291.1 vs. uniprot
Match: A0A6H5KGZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.130e-11
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 2 
Query:  248 PPDVPAGDMAAPTEETRRAEPERSAEDKLLLACCRAIRKESGWQHRTLRQACDWAT 415
            P +   G   +  +++   +P    EDKLLLA CR IRKE+GWQ RTLRQACDWAT
Sbjct:   13 PTESDTGTNVSNNDDSSTGQPPSGGEDKLLLAMCRTIRKETGWQERTLRQACDWAT 68
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10246.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFA1_ECTSI5.360e-1756.52BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
A0A6H5KGZ2_9PHAE3.130e-1153.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10246contigD-dudresnayi_contig10246:3528..6988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LFA1
KEGG koko:K18442
KEGG Pathwayko04144,map04144
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size458
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10246.291.1prot_D-dudresnayi_contig10246.291.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10246 3528..6759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.5754137-CDS-D-dudresnayi_contig10246:3527..35681622927525.5754137-CDS-D-dudresnayi_contig10246:3527..3568Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10246 3528..3568 -
1690556792.365685-CDS-D-dudresnayi_contig10246:3527..35681690556792.365685-CDS-D-dudresnayi_contig10246:3527..3568Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10246 3528..3568 -
1622927525.5913095-CDS-D-dudresnayi_contig10246:6572..67591622927525.5913095-CDS-D-dudresnayi_contig10246:6572..6759Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10246 6573..6759 -
1690556792.3775952-CDS-D-dudresnayi_contig10246:6572..67591690556792.3775952-CDS-D-dudresnayi_contig10246:6572..6759Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10246 6573..6759 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.6085727-UTR-D-dudresnayi_contig10246:6759..69881622927525.6085727-UTR-D-dudresnayi_contig10246:6759..6988Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10246 6760..6988 -
1690556792.3873556-UTR-D-dudresnayi_contig10246:6759..69881690556792.3873556-UTR-D-dudresnayi_contig10246:6759..6988Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10246 6760..6988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10246.291.1

>prot_D-dudresnayi_contig10246.291.1 ID=prot_D-dudresnayi_contig10246.291.1|Name=mRNA_D-dudresnayi_contig10246.291.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=76bp
MLGAGDPPDVPAGDMAAPTEETRRAEPERSAEDKLLLACCRAIRKESGWQ
HRTLRQACDWATSELERNQHPGTGLG
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mRNA from alignment at D-dudresnayi_contig10246:3528..6988-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10246.291.1 ID=mRNA_D-dudresnayi_contig10246.291.1|Name=mRNA_D-dudresnayi_contig10246.291.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3461bp|location=Sequence derived from alignment at D-dudresnayi_contig10246:3528..6988- (Desmarestia dudresnayi DdudBR16 monoicous)
GGCAACACACAGGCACCCAACCGTCTTCTCCACGACTGTTAAGGCGAGAA
GGACAGACGTTGCCGTACGCAGTGTGCTGCCACAGCTGCCCCTCTCCTCG
ACGGAGACCGCCGCTGTGTAGGATCACGGATGCCTGCTCTTAGAACACTG
CCGCAGCTTTAGACTTTTCTAATACCCCAAGCACGGCCAGCAGCAGCACT
ACGATCCTGCTACATACACAACGGCCAATATGTTGGGCGCAGGGGATCCC
CCTGATGTCCCCGCCGGTGATATGGCGGCTCCGACGGAGGAGACAAGGAG
AGCAGAGCCCGAGCGTTCTGCAGAAGACAAGTTGCTTCTGGCGTGCTGCC
GGGCCATCAGGAAGGAATCTGGGTGGCAGCACAGAACGCTTCGACAGGCC
TGTGACTGGGCCACAAGTGAGAGCTGTACAATATTTTAGGATGGGAGAGA
CTCTAGCGAACCTCTCTTCTGCCCCATGCTGCTGGGGTTTGCAGTAGGAA
CTTGGGGAGCGTGGCATTGCGTTCGTGGAACAGTAGTAGTTGCACTGGCA
TTTGCACTTGTCCATTCGTCAGTAGCACCCAGAGAGTCACGATGTTTTCT
GTCCCACTGTTGTGATTTCGTATTTTGTTTGTCAGCACCAGACGGAGGCA
ACCTACTACTACTGTTGTTCCACCGCCTGTGTTCCTACCGGAGTTCCTAC
TGATAAAGATTGCAATGGCGGCATATATGTGTATCTTGCACGTGACGGGT
TCTGCACTTCGTTAGTAATATCATATTATTATAGTGCAATTCGATGAAAG
TCGACGAGGGAAGGAAGTGCTGCACTCTTCTCGCGATGAAAATGTAGGCA
CGTACCGTAGTGGGAAGGCGGGAGGAGCGCGTACTACAGTATGTGACCCC
GGATCTGAGTTACGAAGAGAGATGGAGCTAGAGAAAGAATAGGGCGAAGA
TAGTAAATGGGACGGAGAGAGAGAGTGCGAGGCTGTGGCTCCCTGTTCTG
CGCCGCCTTGGGGTTCCGCCACTACTGTTGTATGTCTATTCATTTGTTGC
GTTGGGTTTTCTTTTGTTTACATACCAGGGGGTAAACGAGTAGACCTCCC
ATAGAACTATTAACAGATATTAATAGAGCAAATCATCCATCTATGATAGA
ACCTACAGCTCTACCTGAGCTTTATGTCCCGGCGTTCCTCTGCCGTACTA
TCAGCAGTCAAAAGTTAAAAGCACGGACAGCAGGTCGTACAATGGTGTTA
TACGTTATATCATACCAGCATGTTATATCACAGTAATTATTGAGTTCGTA
GAGCTCCAGTAATCGAGCGCAGAAACTGGTGTTGTACTCCGCAGAAGCTG
CGCGCTGCGCAAAATACATGAAGGTGTTCGCAGGAGATTGGGCGCCTGCT
GCTGTGTCCGTATTGCAACTGCGCTGTGTTTTGCATCCTATCGACAGTAA
TTACTTGTATCATAGCATCATACTTGCAATGTCGTTGAGTGTACTTACAC
ACGTCAGTCTGTAGTGTGTCTTGCTTCGCACAATGGCATACTTCATATAT
AGACTAGTTGACGACTGCGACGAACGAGGAGGAGGTTCCTCCAACGAATC
GATCGGGGTTGGCTTTAAGAATTTTATTTTGGCACTCCCGGCCGGGCATG
TGTTCGTAAGTGGTAGCCCGTGGTGGTCATGCGAACATCCGCTCGCCCCG
AACAACGGATCACGGTGGTCGTGTTCTTACGGTCCAGGGTCACGGTACGG
TAGAGAACTTTTTCCGCAGAGATCTCTTGCTGTCATACTTCGAACTACAA
CAGTACACTTCTGGTTTTTGACGAGACCGCAGCCAAGGGTGTATGTAACA
CCCCATGCAATGCGAGCAACCTGCACTGACTACTACTACTGTCTGTTGTT
AGCTGTTATTTGCTCTATGGTTTGTACCTCTGTTTGTGAAGTCGAGCAAG
ATTTTGAAGGTCAATCGCTTGCAGACAACGGTACAGTACCGATACTACGG
TCAAAGTCTTGCGACAAACTCTCGTTCGGACGGAAGCCCCCGGCAGTATT
TACACACCTATTTGTTTTTTTGTCTGCCTGTTCTCGTAGCCACTGTTATT
TCCCAAGCCGAGGAGGACGATATGAAATCAGTGGGGGTAGATTGAGTTGT
TTGTGGAGAGGGGCCGGAGGGGTCGGTTTTATTCGGTATAAAAAAGGTGC
CTACCTTTGTGACCACGGGTCCGCGCGATCGGGCTAATGTGACGGAAATA
AATAAATAAAAATCGACTGGATCTTTTGGGGGATTTCTACACCCTGTTAT
TGTGTTGAGGTCGTTAGGTCAGGGTTAGGATTAGTCATTGTTTTAACTAA
CAAATAGATAGAATCAGCCGTGACTTTCCAAACTGGTTCGGGGGCCAGGG
GATAATCGTCAGCCTCACTGTTACTGTTGTGTGATATATCGGTCGCGCGA
ATTATATCGGTCCTCAGATAAGTTGTAGCGCAGTGGCCTCCCCTGGTTAG
TTAAAAAGATTGTTCTGAACTGCTGAACAGCTCACTTTGGGGCTATACTA
TTGGTTGATTGATTGATTTCCTCACATTAGCTCATCGTCCAAGATCTAGC
CCGTGGTCACAAAAGCGCTGAGCCCTATGTAGGAATACTATTAGTATTGA
TGGCACGAACCTCTTAAAGATCCATCCTGTCGATAGCTGTGTAAAGGGGG
GATCACGGAAGCCCCGCCAGGGTACTTTGATACTACTGTTGTACAGCAGA
CTAACATCATCGACCATCTCCACATCTTATTTTTTTGTATGATCCACGTA
GATTCCCTGCATAACCCCGATAATCGATAAAGTAGTTACACCTGCACATA
GCAAACGAGAATGAAAATAGTCGTCACTTTTATCTTGTAACAGGAGTATC
GATATATGGCACGGTACCCTGCGGACCTTTTCGTTCGTCTCTTTTACCTT
TTTTTTTTCTTTCTTGTCTTCTGCAATTCGACGAAAATCGACGAGCTATG
GGGGTGCCGAAACCCTCGTGCACAATAAAAACAAAGGCGTATGGGTACAG
GGGGGGGGGGGGGGGGGGGGAAGCCCCCTGCTGGGACGGCCCCCTGCCCA
TACGGCCGCCCGGAGCGGCGAGCGGACGAGCCCCCGTCAGCCACNNNNNN
NNNNGAGGTGCATCAAAAGCCAGGAAGAACATAAGAAAAGGGGTGGTAGT
GGTGCGGGGGGGGGGGGGGGGGTATGTAAGACACCTGCTGTGACGGCGAC
TTGCTCATACAGGCGCTCTGAGCGATGAGCTGAAGAGCTCCCGTGAGCTA
CTGTACTTAGCTGGACTGGGAAGGGAAAGTGACGTATAAAAAAAAAGAGA
ATAAAATGCCGCCTGAAGACCTCTACCGCCTCTTCTTGCTGTGATGCCCA
CACACCTACGTGTGACACAGGCGAACTCGAGAGGAACCAGCACCCGGGGA
CGGGGCTAGGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10246:3528..6988-

>mRNA_D-dudresnayi_contig10246.291.1 ID=mRNA_D-dudresnayi_contig10246.291.1|Name=mRNA_D-dudresnayi_contig10246.291.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at D-dudresnayi_contig10246:3528..6988- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGGGCGCAGGGGATCCCCCTGATGTCCCCGCCGGTGATATGGCGGC
TCCGACGGAGGAGACAAGGAGAGCAGAGCCCGAGCGTTCTGCAGAAGACA
AGTTGCTTCTGGCGTGCTGCCGGGCCATCAGGAAGGAATCTGGGTGGCAG
CACAGAACGCTTCGACAGGCCTGTGACTGGGCCACAAATGTTGGGCGCAG
GGGATCCCCCTGATGTCCCCGCCGGTGATATGGCGGCTCCGACGGAGGAG
ACAAGGAGAGCAGAGCCCGAGCGTTCTGCAGAAGACAAGTTGCTTCTGGC
GTGCTGCCGGGCCATCAGGAAGGAATCTGGGTGGCAGCACAGAACGCTTC
GACAGGCCTGTGACTGGGCCACAAGCGAACTCGAGAGGAACCAGCACCCG
GGGACGGGGCTAGGAGCGAACTCGAGAGGAACCAGCACCCGGGGACGGGG
CTAGGA
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