mRNA_D-dudresnayi_contig10220.259.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10220.259.1
Unique NamemRNA_D-dudresnayi_contig10220.259.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: A0A7S3MH77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MH77_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.030e-27
Identity = 48/62 (77.42%), Postives = 60/62 (96.77%), Query Frame = 1
Query:    1 LLELVQEFCMSKSFESEFEAFAKEHANVFMQALDFTEDTTEHPLEFHNVYRQYLNKFEGMIE 186
            LLE VQEFC+S+SFE++FEAFAKEHANVF++ALDFT+++TEHPLEFH+VYR+YL KFEG+IE
Sbjct:   39 LLEDVQEFCISQSFEAQFEAFAKEHANVFLKALDFTDESTEHPLEFHDVYRKYLTKFEGLIE 100          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: A0A7S2SVE5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVE5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.600e-18
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   64 AKEHANVFMQALDFTEDTTEHPLEFHNVYRQYLNKFEGMIEDFILKNGFKIGDFYDQCKDILDNDQVFGTKRFFIETMMATSEYENFFLLMKAEMRE 354
            ++ H ++F  AL  + D  EH LE+++VYR+YL++FE  I  FI + G  + +F   C+ +L+ +  F  KRFF+E ++AT+EY  F  LMK E R+
Sbjct:   13 SRRHVDLFASALTMSADD-EHRLEYYDVYREYLDEFEKKIHTFIERTGHSVDEFQTACQKVLEEEGEFSPKRFFVEALLATTEYPIFLSLMKGEARK 108          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: A0A6U4DE82_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DE82_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-17
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 LLELVQEFCMSKSFESEFEAFAKEHANVFMQALDFTEDTTEHPLEFHNVYRQYLNKFEGMIEDFILKNGFKIGDFYDQCKDILDNDQVFGTKRFFIETMMATSEYENFFLLMKAE 345
            LLE VQEFCMS  FE +FE F + +  VF +     +   E  LE+H +Y +YL  FEG IE FI   G +  +F  Q K+ +    +   +RFF+E +++T+ Y+ F  LM  E
Sbjct:   82 LLEKVQEFCMSTGFEKDFEDFGRRYWRVFSEV----DAHGEQKLEWHEIYNEYLETFEGRIETFIRSEGAEPSEFQAQAKEAMKRLSLSDPRRFFVEALLSTTTYDMFLRLMVGE 192          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: A0A1V9YQ41_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YQ41_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.540e-15
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   19 EFCMSKSFESEFEAFAKEHANVFMQALDFTEDTTEHPLEFHNVYRQYLNKFEGMIEDFILKNGFKIGDFYDQCKDILDNDQVFGTKRFFIETMMATSEYENFFLLMKAEMRE 354
            ++C S +FE  F+ FA E+A VF +A+D   D  EH  E+  ++ +YL  FE  +  F+   G  I +FY+ CKD++D         +F+  + A+ EY+ F+ LM  E R+
Sbjct:    9 DYCASPAFERVFDEFADENARVFYEAVD--SDDVEHKHEYKELHDEYLKLFEDRLSGFLEDEGASIKEFYEACKDVVDQKGEMAEYSWFLHRLFASMEYKLFYGLMLNEARQ 118          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: K3X8Y9_GLOUD (Cilia- and flagella-associated protein 36 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8Y9_GLOUD)

HSP 1 Score: 75.1 bits (183), Expect = 6.330e-15
Identity = 40/122 (32.79%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 LLELVQEFCMSKSFESEFEAFAKEHANVFMQALDFTEDTTEHPLEFHNVYRQYLNKFEGMIEDFILKNGFKIGDFYDQCKDILDNDQ--VFGTK---RFFIETMMATSEYENFFLLMKAEMR 351
            ++E   E C++  FE  F+ FA+E+A VFM A++      EH  E+  ++ +YL  FE  + DFI   G  I +F+ +C+DI++ +   +F  +   ++F+E ++A+ +Y  F+ LM  E R
Sbjct:    5 IIERAAEHCVTSKFEHIFDNFARENAEVFMDAVEAKGGDVEHKHEYKELHDRYLRLFEEELSDFIESEGATIEEFFRECRDIMEGNYTALFSDEHQYKWFVEHLVASMDYNQFYALMVNEAR 126          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: F0XZQ0_AURAN (ARL2_Bind_BART domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZQ0_AURAN)

HSP 1 Score: 79.3 bits (194), Expect = 7.770e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   13 VQEFCMSKSFESEFEAFAKEHANVFMQAL----DFTEDTTEHPLEFHNVYRQYLNKFEGMIEDFILKNGFKIGDFYDQCKDILDNDQVFGTKRFFIETMMATSEYENFFLLMKAE 345
            V++  M   F  EFE FA++H   F+ AL      T D  +H   F++ Y+ YL  FE  +E  I+  G  +GDF    ++ L+N   F   RFF+E ++AT+EYE F +LM  E
Sbjct: 1155 VRKVLMGAEFVREFETFAEKHIEPFLDALVKGESPTSDGGDHSHSFYDTYKVYLEHFERRVEQHIVAAGATVGDFMAVAREALENASDFDPNRFFLEALLATTEYETFIVLMMNE 1269          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: A0A1V9ZS38_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS38_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.980e-14
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    1 LLELVQEFCMSKSFESEFEAFAKEHANVFMQALDFTEDTTEHPLEFHNVYRQYLNKFEGMIEDFILKNGFKIGDFYDQCKDILDNDQVFGTKRFFIETMMATSEYENFFLLMKAEMRE 354
            ++E    +C S +FE  F+ FA+EHA  F  A     D  EH  E+  ++  YL  FE  +  F+   G  + DFYD CKD+++        ++F++ + A+ EY+ F+ LM  E R+
Sbjct:  122 IIERAANYCASPAFERVFDEFAEEHAPAFFDAA--RSDDVEHKHEYKELHNAYLKLFEDRLSGFLEDEGGTVSDFYDACKDVMEQKGDLAEYKWFLDRLHASMEYKLFYGLMVNEARQ 237          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: H3HEE7_PHYRM (Cilia- and flagella-associated protein 36 n=6 Tax=Phytophthora TaxID=4783 RepID=H3HEE7_PHYRM)

HSP 1 Score: 72.0 bits (175), Expect = 9.560e-14
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   19 EFCMSKSFESEFEAFAKEHANVFMQALDFTEDTTEHPLEFHNVYRQYLNKFEGMIEDFILKNGFKIGDFYDQCKDILDNDQVF----GTKRFFIETMMATSEYENFFLLMKAEMR 351
            EFC S  FE  F+ FA++HA+VF+ A +      EH  E+  ++ QYL  FE  + +F+   G  I +F+ +C++I D          T  +F++ ++A  +Y++F+ LM  E R
Sbjct:   11 EFCSSPKFERVFDNFARDHADVFIDATEAKGGDVEHKHEYKELHDQYLKLFEEELSEFVESEGATIEEFFKECREIHDGQYTALFDEHTYAWFVDHLLACMDYKHFYGLMVNEAR 125          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: D8LHI3_ECTSI (ARL2_Bind_BART domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI3_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.920e-9
Identity = 34/102 (33.33%), Postives = 56/102 (54.90%), Query Frame = 1
Query:   64 AKEHANVFMQALDFTEDTT----EHPLEFHNVYRQYLNKFEGMIEDFILKN-GFKIGDFYDQCKDILDNDQVFGTKRFFIETMMATSEYENFFLLMKAEMRE 354
            +++H   F+   D  + T+    EH LEF  VY  +L  FE  I  FI +  G  +  F  +C++ L   + F  +RFFIE ++AT++Y+ F+ LM  E ++
Sbjct:   37 SRKHHEPFLDTADEGQWTSPGEVEHKLEFTEVYNLFLRHFENKISGFIEEEAGGTVEQFQQECEEALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKK 138          
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Match: A0A6H5JKV0_9PHAE (ARL2_Bind_BART domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.690e-9
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   67 KEHANVFMQALDFTEDTT----EHPLEFHNVYRQYLNKFEGMIEDFILKN-GFKIGDFYDQCKDILDNDQVFGTKRFFIETMMATSEYENFFLLMKAEMRE 354
            ++H   F+   D  + T+    EH LEF  VY  +L  FE  I  FI +  G  +  F  +CK+ L   + F  +RFFIE ++AT++Y+ F++LM  E ++
Sbjct:   38 RKHHEPFLNTADEGQWTSPAEVEHKLEFTEVYNLFLTHFEDKISGFIEEEAGGTVEQFQQECKEALLTLEEFSPRRFFIEILLATTDYDRFYVLMVGEAKK 138          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10220.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S3MH77_9STRA1.030e-2777.42Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2SVE5_9STRA7.600e-1840.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4DE82_9STRA1.500e-1739.13Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A1V9YQ41_9STRA2.540e-1534.82Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
K3X8Y9_GLOUD6.330e-1532.79Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
F0XZQ0_AURAN7.770e-1537.39ARL2_Bind_BART domain-containing protein n=1 Tax=A... [more]
A0A1V9ZS38_9STRA1.980e-1433.05Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
H3HEE7_PHYRM9.560e-1433.04Cilia- and flagella-associated protein 36 n=6 Tax=... [more]
D8LHI3_ECTSI1.920e-933.33ARL2_Bind_BART domain-containing protein n=1 Tax=E... [more]
A0A6H5JKV0_9PHAE2.690e-934.65ARL2_Bind_BART domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10220contigD-dudresnayi_contig10220:3455..3895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog44056.XP_009033756.1
EggNOG free text desc.function. Source PGD
EggNOG OGs2C07X@1,2SBZW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10220.259.1prot_D-dudresnayi_contig10220.259.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10220 3482..3895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927522.9136147-UTR-D-dudresnayi_contig10220:3454..34811622927522.9136147-UTR-D-dudresnayi_contig10220:3454..3481Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10220 3455..3481 +
1690556791.0696826-UTR-D-dudresnayi_contig10220:3454..34811690556791.0696826-UTR-D-dudresnayi_contig10220:3454..3481Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10220 3455..3481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927522.9256103-CDS-D-dudresnayi_contig10220:3481..36551622927522.9256103-CDS-D-dudresnayi_contig10220:3481..3655Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 3482..3655 +
1690556791.078739-CDS-D-dudresnayi_contig10220:3481..36551690556791.078739-CDS-D-dudresnayi_contig10220:3481..3655Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 3482..3655 +
1622927522.936307-CDS-D-dudresnayi_contig10220:3742..38951622927522.936307-CDS-D-dudresnayi_contig10220:3742..3895Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 3743..3895 +
1690556791.08676-CDS-D-dudresnayi_contig10220:3742..38951690556791.08676-CDS-D-dudresnayi_contig10220:3742..3895Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 3743..3895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10220.259.1

>prot_D-dudresnayi_contig10220.259.1 ID=prot_D-dudresnayi_contig10220.259.1|Name=mRNA_D-dudresnayi_contig10220.259.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=109bp
MSKSFESEFEAFAKEHANVFMQALDFTEDTTEHPLEFHNVYRQYLNKFEG
MIEDFILKNGFKIGDFYDQCKDILDNDQVFGTKRFFIETMMATSEYENFF
LLMKAEMRE
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mRNA from alignment at D-dudresnayi_contig10220:3455..3895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10220.259.1 ID=mRNA_D-dudresnayi_contig10220.259.1|Name=mRNA_D-dudresnayi_contig10220.259.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at D-dudresnayi_contig10220:3455..3895+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTACTCGAACTTGTGCAGGAGTTTTGCATGTCAAAATCTTTTGAATCCGA GTTTGAAGCATTTGCTAAAGAACATGCTAATGTTTTTATGCAAGCTCTAG ACTTTACGGAAGATACTACGGAGCATCCTTTGGAGTTTCATAATGTGTAC AGGCAGTATCTGAACAAATTCGAGGGTATGATTGAAGATTTTATTCTAAA GGTAAAGTTGAAAATAATATCTTGATGTCAATATATCTAATGTTTTATAT AATCAACTTACACATGTAATAATTCTTATTTATTTTAGAATGGATTTAAA ATTGGAGATTTTTACGATCAGTGTAAAGATATTTTAGACAATGATCAAGT GTTTGGCACAAAACGCTTTTTTATTGAAACTATGATGGCTACTAGTGAAT ATGAGAACTTCTTTTTATTAATGAAAGCAGAAATGCGTGAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10220:3455..3895+

>mRNA_D-dudresnayi_contig10220.259.1 ID=mRNA_D-dudresnayi_contig10220.259.1|Name=mRNA_D-dudresnayi_contig10220.259.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at D-dudresnayi_contig10220:3455..3895+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCAAAATCTTTTGAATCCGAGTTTGAAGCATTTGCTAAAGAACATGC
TAATGTTTTTATGCAAGCTCTAGACTTTACGGAAGATACTACGGAGCATC
CTTTGGAGTTTCATAATGTGTACAGGCAGTATCTGAACAAATTCGAGGGT
ATGATTGAAGATTTTATTCTAAAGATGTCAAAATCTTTTGAATCCGAGTT
TGAAGCATTTGCTAAAGAACATGCTAATGTTTTTATGCAAGCTCTAGACT
TTACGGAAGATACTACGGAGCATCCTTTGGAGTTTCATAATGTGTACAGG
CAGTATCTGAACAAATTCGAGGGTATGATTGAAGATTTTATTCTAAAGAA
TGGATTTAAAATTGGAGATTTTTACGATCAGTGTAAAGATATTTTAGACA
ATGATCAAGTGTTTGGCACAAAACGCTTTTTTATTGAAACTATGATGGCT
ACTAGTGAATATGAGAACTTCTTTTTATTAATGAAAGCAGAAATGCGTGA
AAATGGATTTAAAATTGGAGATTTTTACGATCAGTGTAAAGATATTTTAG
ACAATGATCAAGTGTTTGGCACAAAACGCTTTTTTATTGAAACTATGATG
GCTACTAGTGAATATGAGAACTTCTTTTTATTAATGAAAGCAGAAATGCG
TGAA
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