mRNA_D-dudresnayi_contig1022.257.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1022.257.1
Unique NamemRNA_D-dudresnayi_contig1022.257.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: A0A7S3MEQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEQ8_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.490e-41
Identity = 68/84 (80.95%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:   34 NTLNTSLDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAED 285
            N ++TSL+GG IEKGS+DNGDPTTTNLYLGNL P TTEE L ++FG+YG+INSVKIMWPR+EEEKARKRNCGFVSFK RADAED
Sbjct:  161 NVMSTSLNGGDIEKGSYDNGDPTTTNLYLGNLAPTTTEEHLLDLFGKYGEINSVKIMWPRSEEEKARKRNCGFVSFKLRADAED 244
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: A0A7S2DH44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH44_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.310e-39
Identity = 61/95 (64.21%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:   73 KGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVK 357
            KGSFD+GDP TTNLY+GNL P  TEE+L+E+F R+G I SVKIMWPRTEEE+AR+RNCGFVSF +R DA+DA   + D +++G+++ +GWGKA+K
Sbjct:   78 KGSFDDGDPETTNLYVGNLAPTVTEETLHELFSRFGQIYSVKIMWPRTEEERARRRNCGFVSFMQRPDADDAKTTMHDGEIEGYRISIGWGKAIK 172
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: W2PZL8_PHYPN (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=W2PZL8_PHYPN)

HSP 1 Score: 145 bits (367), Expect = 3.950e-38
Identity = 70/104 (67.31%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:   49 SLDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVKI 360
            S++G  + KGSFDNGDP TTNLY+GNL P  TEE L   FGRYG++ SVKIMWPR+EEE+ARKRNCGFVSF KR DA+DA I L +  L+G  M++GWGKAVKI
Sbjct:  189 SMEGVGMTKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDNKQLEGQPMIVGWGKAVKI 292
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: A0A8J5M413_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M413_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.630e-38
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:   49 SLDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVKI 360
            S++G  + KGSFDNGDP TTNLY+GNL P  TEE L   FGRYG++ SVKIMWPR+EEE+AR+RNCGFVSF +R DA+DA I L + +L+G  M++GWGKAVKI
Sbjct:  189 SMEGVCMAKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARRRNCGFVSFYERRDADDARINLDNKELEGQPMIVGWGKAVKI 292
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: A0A329RQG1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RQG1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.330e-37
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:   49 SLDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVKI 360
            S++G  + KGSFDNGDP TTNLY+GNL P  TEE L   FGRYG++ SVKIMWPR+EEE+AR+RNCGFVSF +R DA+DA I L + +L+G  M++GWGKAVKI
Sbjct:  155 SMEGVCMAKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARRRNCGFVSFYERRDADDARINLDNKELEGQPMIVGWGKAVKI 258
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: D0N9R1_PHYIT (U2-associated splicing factor, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N9R1_PHYIT)

HSP 1 Score: 144 bits (363), Expect = 1.360e-37
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:   49 SLDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVKI 360
            S++G  + KGSFDNGDP TTNLY+GNL P  TEE L   FGRYG++ SVKIMWPR+EEE+ARKRNCGFVSF +R DA+DA + L +  L+G  M++GWGKAVKI
Sbjct:  161 SMEGVGLAKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYERRDADDARVNLDNKQLEGQPMIVGWGKAVKI 264
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: A0A7R9H7B9_TIMPO (Hypothetical protein (Fragment) n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9H7B9_TIMPO)

HSP 1 Score: 134 bits (337), Expect = 2.420e-37
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   67 IEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVKI 360
            ++ GS+DNGDPTTTNLYLGNLNP  TE+ L E+FGRYG + S+KIMWPR++EEKAR RNCGFV+F  R D E AL  L   D+  ++M LGWGKAV I
Sbjct:   36 LKYGSYDNGDPTTTNLYLGNLNPKITEQQLMEVFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKFLNGKDVMAYEMKLGWGKAVPI 133
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: A0A6G0KVJ4_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6G0KVJ4_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.540e-37
Identity = 66/103 (64.08%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:   52 LDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVKI 360
            +DG  + KGSFD GDP TTNLY+GNL P  TEE L + FGRYGD+ SVKIMWPR+EEE+AR+RNCGFVSF +R DA+DA + L + +L+G  +++GWGKAVKI
Sbjct:  170 MDGAAMTKGSFDTGDPETTNLYVGNLAPTVTEELLEKEFGRYGDVYSVKIMWPRSEEERARRRNCGFVSFYERRDADDARVNLDNKELEGQPIIVGWGKAVKI 272
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: A0A484EBR3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBR3_BRELC)

HSP 1 Score: 143 bits (361), Expect = 2.560e-37
Identity = 69/104 (66.35%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:   49 SLDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVKI 360
            S+D   + KGSFD GDP TTNLY+GNL P  TEE L   FGRYG++ S+KIMWPR+EEE+ARKRNCGFVSF KR DA+DA I L D  L+G  M++GWGKAVKI
Sbjct:  188 SMDTIALTKGSFDTGDPETTNLYVGNLAPTVTEEVLKAEFGRYGEVYSIKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDDKQLEGQPMIVGWGKAVKI 291
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BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Match: A0A225VBK9_9STRA (U2-associated splicing factor n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBK9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.240e-37
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:   52 LDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEESLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIELQDIDLDGFKMVLGWGKAVKI 360
            ++G  + KGSFD GDP TTNLY+GNL P  TEE+L   FGRYG++ SVKIMWPR+EEE+ARKRNCGFVSF +R DA+DA I L + +L+G  M++GWGKAVKI
Sbjct:  186 MEGTGMTKGSFDTGDPETTNLYVGNLAPSVTEEALQTEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYQRRDADDARINLDNKELEGQPMIVGWGKAVKI 288
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1022.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3MEQ8_9STRA3.490e-4180.95Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2DH44_9STRA1.310e-3964.21Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W2PZL8_PHYPN3.950e-3867.31Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
A0A8J5M413_9STRA8.630e-3865.38Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A329RQG1_9STRA1.330e-3765.38Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
D0N9R1_PHYIT1.360e-3765.38U2-associated splicing factor, putative n=2 Tax=Ph... [more]
A0A7R9H7B9_TIMPO2.420e-3764.29Hypothetical protein (Fragment) n=1 Tax=Timema pop... [more]
A0A6G0KVJ4_9STRA2.540e-3764.08Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A484EBR3_BRELC2.560e-3766.35Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A225VBK9_9STRA4.240e-3765.05U2-associated splicing factor n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1022contigD-dudresnayi_contig1022:18668..19344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.4e-33
Seed eggNOG ortholog115417.EPrPW00000021960
Preferred nameU2SURP
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U2-associated splicing factor. Source PGD
EggNOG OGs1MBDJ@121069,KOG0151@1,KOG0151@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size367
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1022.257.1prot_D-dudresnayi_contig1022.257.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1022 18670..19344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.9907434-CDS-D-dudresnayi_contig1022:18669..187411622927520.9907434-CDS-D-dudresnayi_contig1022:18669..18741Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1022 18670..18741 -
1690556791.0217826-CDS-D-dudresnayi_contig1022:18669..187411690556791.0217826-CDS-D-dudresnayi_contig1022:18669..18741Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1022 18670..18741 -
1622927522.8341806-CDS-D-dudresnayi_contig1022:18871..190171622927522.8341806-CDS-D-dudresnayi_contig1022:18871..19017Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1022 18872..19017 -
1690556791.0356877-CDS-D-dudresnayi_contig1022:18871..190171690556791.0356877-CDS-D-dudresnayi_contig1022:18871..19017Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1022 18872..19017 -
1622927522.843362-CDS-D-dudresnayi_contig1022:19199..193441622927522.843362-CDS-D-dudresnayi_contig1022:19199..19344Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1022 19200..19344 -
1690556791.0447195-CDS-D-dudresnayi_contig1022:19199..193441690556791.0447195-CDS-D-dudresnayi_contig1022:19199..19344Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1022 19200..19344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1022.257.1

>prot_D-dudresnayi_contig1022.257.1 ID=prot_D-dudresnayi_contig1022.257.1|Name=mRNA_D-dudresnayi_contig1022.257.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=121bp
NRGERGAGGSENTLNTSLDGGYIEKGSFDNGDPTTTNLYLGNLNPITTEE
SLYEIFGRYGDINSVKIMWPRTEEEKARKRNCGFVSFKKRADAEDALIEL
QDIDLDGFKMVLGWGKAVKIS
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mRNA from alignment at D-dudresnayi_contig1022:18668..19344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1022.257.1 ID=mRNA_D-dudresnayi_contig1022.257.1|Name=mRNA_D-dudresnayi_contig1022.257.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=677bp|location=Sequence derived from alignment at D-dudresnayi_contig1022:18668..19344- (Desmarestia dudresnayi DdudBR16 monoicous)
AACAGAGGAGAAAGAGGAGCAGGAGGGTCTGAGAATACACTCAATACTAG
TCTTGATGGCGGTTACATTGAAAAAGGTTCTTTTGACAATGGGGATCCTA
CGACTACTAATTTATATCTAGGCAATCTTAATCCTATTACTACTGGTAAG
ACTACTACTATATACATATATATGACTATATATGAAACATCAGTTTATAT
TATGTATTTTAATATCATTATTGTATTACATTTTAAATTGATATATTATA
TATTACTCCCAACGACGTATAAACTACTACAACTACCACTAACACTGCTA
CATCATTCTCCTTCTACCCCTATCTAGAGGAATCTCTCTATGAGATATTT
GGTAGATATGGGGATATCAACAGTGTAAAGATCATGTGGCCTCGGACTGA
AGAAGAAAAGGCTAGAAAACGAAACTGTGGCTTTGTTTCTTTTAAAAAAC
GTGCTGATGCTGAAGATGCTCTGGTAGGTGACGCATATTAATGTGGAAAT
ATACTGTACCATCGGTACACATATTTTAATTTTAGTATTGTATGTATATC
TTGTTATTGATTATCTTATATACTACTACTGTTATAACTACTGTGTATAT
CAGATCGAACTGCAAGATATTGATCTCGATGGGTTTAAGATGGTATTAGG
ATGGGGGAAAGCAGTGAAGATCTCCCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1022:18668..19344-

>mRNA_D-dudresnayi_contig1022.257.1 ID=mRNA_D-dudresnayi_contig1022.257.1|Name=mRNA_D-dudresnayi_contig1022.257.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at D-dudresnayi_contig1022:18668..19344- (Desmarestia dudresnayi DdudBR16 monoicous)
AACAGAGGAGAAAGAGGAGCAGGAGGGTCTGAGAATACACTCAATACTAG
TCTTGATGGCGGTTACATTGAAAAAGGTTCTTTTGACAATGGGGATCCTA
CGACTACTAATTTATATCTAGGCAATCTTAATCCTATTACTACTGAACAG
AGGAGAAAGAGGAGCAGGAGGGTCTGAGAATACACTCAATACTAGTCTTG
ATGGCGGTTACATTGAAAAAGGTTCTTTTGACAATGGGGATCCTACGACT
ACTAATTTATATCTAGGCAATCTTAATCCTATTACTACTGAGGAATCTCT
CTATGAGATATTTGGTAGATATGGGGATATCAACAGTGTAAAGATCATGT
GGCCTCGGACTGAAGAAGAAAAGGCTAGAAAACGAAACTGTGGCTTTGTT
TCTTTTAAAAAACGTGCTGATGCTGAAGATGCTCTGAGGAATCTCTCTAT
GAGATATTTGGTAGATATGGGGATATCAACAGTGTAAAGATCATGTGGCC
TCGGACTGAAGAAGAAAAGGCTAGAAAACGAAACTGTGGCTTTGTTTCTT
TTAAAAAACGTGCTGATGCTGAAGATGCTCTGATCGAACTGCAAGATATT
GATCTCGATGGGTTTAAGATGGTATTAGGATGGGGGAAAGCAGTGAAGAT
CTCCATCGAACTGCAAGATATTGATCTCGATGGGTTTAAGATGGTATTAG
GATGGGGGAAAGCAGTGAAGATCTCC
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