mRNA_D-dudresnayi_contig10218.252.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10218.252.1
Unique NamemRNA_D-dudresnayi_contig10218.252.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10218.252.1 vs. uniprot
Match: A0A6H5L3V7_9PHAE (GT24 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.220e-33
Identity = 67/113 (59.29%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    1 KGLKVQSWSLNGSIKGGLGEMRTTLMQAVMQENMVIGQLVLGGLVSDTTKNVYSRVLKHCGAKIYPRVHPALTESVGDARVINLSSARAVELFEGSRRAGTGGREGSPELPPL 339
            KGL +QSWS+NG + G LGEMR ++MQ VMQE+M++GQLV  GLVSD TK+VYSR LKH G K++PR+HPA TE++ DA+V++LSS+ AVELF G         E S E PPL
Sbjct:  977 KGLSIQSWSVNGLVMGSLGEMRESIMQVVMQEHMLLGQLVGQGLVSDKTKDVYSRALKHSGDKVHPRIHPAFTETLADAKVVDLSSSDAVELFVGDMNMNNEEGEESAE-PPL 1088
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10218.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3V7_9PHAE1.220e-3359.29GT24 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10218contigD-dudresnayi_contig10218:2001..8674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size347
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10218.252.1prot_D-dudresnayi_contig10218.252.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10218 2003..8674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.3155587-CDS-D-dudresnayi_contig10218:2002..20431622927520.3155587-CDS-D-dudresnayi_contig10218:2002..2043Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10218 2003..2043 -
1690556790.8148832-CDS-D-dudresnayi_contig10218:2002..20431690556790.8148832-CDS-D-dudresnayi_contig10218:2002..2043Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10218 2003..2043 -
1622927520.3306613-CDS-D-dudresnayi_contig10218:2813..29741622927520.3306613-CDS-D-dudresnayi_contig10218:2813..2974Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10218 2814..2974 -
1690556790.8233664-CDS-D-dudresnayi_contig10218:2813..29741690556790.8233664-CDS-D-dudresnayi_contig10218:2813..2974Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10218 2814..2974 -
1622927520.3411448-CDS-D-dudresnayi_contig10218:5295..53571622927520.3411448-CDS-D-dudresnayi_contig10218:5295..5357Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10218 5296..5357 -
1690556790.8316674-CDS-D-dudresnayi_contig10218:5295..53571690556790.8316674-CDS-D-dudresnayi_contig10218:5295..5357Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10218 5296..5357 -
1622927520.3541389-CDS-D-dudresnayi_contig10218:8593..86741622927520.3541389-CDS-D-dudresnayi_contig10218:8593..8674Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10218 8594..8674 -
1690556790.8409395-CDS-D-dudresnayi_contig10218:8593..86741690556790.8409395-CDS-D-dudresnayi_contig10218:8593..8674Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10218 8594..8674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10218.252.1

>prot_D-dudresnayi_contig10218.252.1 ID=prot_D-dudresnayi_contig10218.252.1|Name=mRNA_D-dudresnayi_contig10218.252.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=115bp
KGLKVQSWSLNGSIKGGLGEMRTTLMQAVMQENMVIGQLVLGGLVSDTTK
NVYSRVLKHCGAKIYPRVHPALTESVGDARVINLSSARAVELFEGSRRAG
TGGREGSPELPPLDW
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mRNA from alignment at D-dudresnayi_contig10218:2001..8674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10218.252.1 ID=mRNA_D-dudresnayi_contig10218.252.1|Name=mRNA_D-dudresnayi_contig10218.252.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=6674bp|location=Sequence derived from alignment at D-dudresnayi_contig10218:2001..8674- (Desmarestia dudresnayi DdudBR16 monoicous)
AAGGGCTTGAAGGTTCAGTCGTGGTCGCTCAATGGATCCATCAAGGGCGG
CCTAGGGGAGATGCGAACCACGCTCATGCAGGTATCGTGTTGCCAACGTT
GGCAGTGTTTTTTTACGAAGTATGTATTTTTTGTGTAAGGCTCTTTGTCG
AGGGAACCTGTACTATTGGATATCGTCTCCTAAAAAAACACAATTAGTTT
TGTCTTGCTACCAACTGTAATTATTTATTATTATAATTTTCTTAGTATTT
TCGTAGTACCTACTATTACTATTTATTATTTCAGTGTAATTTTCTCATTA
GGGTGTTTGCGATTTCCAAATTTTGGTTTTGAAAGTTCGATTGTATTACT
ATTTTTTCTTGCAAAGACATCAGCCGTGACGTTCCAAACTGGTTCGGGGG
CCAGGGGATAATCGTCAAGCTCATTGTGTGATACATCGGTTACACCGAGA
CCGCCGAACGGGAACATAAATTGAACTTTGACCAAATGTTGGTTTTAAAT
TTCCATGAGATCACACATATGACCGACATTTGAAATCAATTTTTGATTGT
GTGTTGGTGCTTGTGATTGTATTAGAGAGACTTCCCGGCATACACCCCGA
ACACGTAAATATATAGTATTTAGCGTACCCTACTATGATACTATGATACT
GTTGGTGTACTGTTTGTTGCTGTTGTGGTTGCAGCGTACAGCACAACAAC
AGCAGCAGTACAGCTGCTACTACTACTGTTGTACCTGGTACATGGTACTT
CACTCGATTGCTGCACCATGCATCTACTACTCATAGTACTGTAGCAACCG
GCGTTTCGGGCGTCGCATTGGAGGAATGGGTTTGGGGCGAGGTGTACGGA
GTGGTGGTTGGGAGCACTACCGTGCATGAGACGATGTTTTGGCGTGGTGG
GCTTCGCCCATCGCTTTGCGATGCACGAACGCGCTGAGAAGACGGTCGCC
AAATTATCTGACATAGCGCCACAAGCTACTGCGCGAGCAGCCGCTACACT
AGCGAGCTATCGTGCGCATCACTGTAGCTTGTAGTGGGTGCTGAAGACGA
CGCGTGAAATAACATTCGTTGCCATAAAATCAATCCTCCTCCTGGTGATC
CCCTGCGAACACGGCGTACTCGTAGGCTGTTTGTTGTTGTAGATTGTGAA
GACTGATTGGCATCTGCAACTGAAGTGTGCGTTGCAGTATTTGTTTGCAG
CAGACATACGTGAGACCACGGAAGCAGTAGACAGCACATACATGATAAGC
ATAGCCAATACATTTGTAGCACTTGCGGCACCGCATACGCTGGGTAGCGT
TGCAGTGCTGCTGTGTGCAAGGTCGATCGAGCAGGAGAGGTTGTTTATGA
AAACAGTTATTTTATGATCTGCGTGCACGTCATTTTGTCACGTACACCCG
CTCTTTTGGTTTGTCTCGATGGCTGTGTCCGCACCACAGTGCTGTGCGCA
CCATGTCATCTGTACAGTTGTGAGTATTCTGCTGTTGTTACTGTGTGTGT
CTCTGTTTTGTGGTGCTTGTGCACGGGGTGCGCCGTTGGCTATGCTGGTG
CTCGTGCTGCGGTTGTTGGTTGGTTGCTTGTTCTTGCTCTTCTTGTCGCT
GTGAAACCGAAAAACAATTATTCGTGTTTCTTCGGGTTGCTGTTACCGGC
TCTCTATAATCAAAAATATCAAATTTCGGTTTTCGCAAGCTGTTTGGGTC
AAAATTCAGTTTCAAAATTCCGTGCCGGTTCAGAATCGAACTTTGACAAT
CGAACTTTGAATCGCAAACACCCTATTACCCACTATTATTATTCGTCTTT
GCCCATAATAATATTAATAGTGTCTTTGCGTTGATAAGGAATGTTAAACA
TGTACTTCGTATCAACATAGCTAGATAATAGTATGTGGTATACGGTATGT
TTTTGGTACATATTAGTATTTACTTGTACTGAAGAGCAGAAGAGCAGAAG
AGCAGTCTGGGACATCCGTAACACCAACAAAACCCGGGGAATGATTATTA
TTGTTTTTTGTCCGCATATCCGGGGGATAAAACCGCTCGGAAAAAAATAT
AACGCCTTATATACTACTCGTATCATAAGCGGGTAGCTGTACTGAAATTG
CTCCCCAATGTACATCTCGTGGTCAGCAGTACAGAGACGATACCTGTTAC
TACTTAATACAGTAAGGTCACTGTTTTTTTACAGTTACATCAACGTATTT
TTCGAGGCGGCCATTTTTCGTACCGTAATCGCATGCGATTCAAGGTACAG
TCTCGTGTGTGTGTGATTTTTTGTTTTTTTTCGCAGGGCTTGGCGTTGGG
TTGGGGTTGGGGTTGGGGTTGGGGTTGGGGTTAGGGTTGGGGTTAGGGTT
GGGATTAGGGTTGGGGTTAAGGTTGGGGTTGGGATTAGGGTTGGGGTTAG
GGTTGGAGTTAAGGTTGGGATTAGGGTTGGGATTAGGGTCGGGGTTGGGA
TTAGGGTTGGGGTTAGGGTTGGGATTAGGGTTGGGGTTGGGATTAGGATT
GGGGTTAGGGTTGGGGTTGGGCTTAAGGTTGGGGTTAGGGTTGGGATTAG
GGTTGGGGTTAGGGTTGGGGTTAGGGTTGGGGTTAGGGGTTGCGATTGGA
GCAGAATTTCACTCGCCAGTCGAGCGCATATTGCACGGGGTAACGCCGTG
GTGCCTTACTGGTCATATCATGTGTTTTTTTGGGAGCACTACAGACAGTA
TGATACTATGATACTGTATAATACGTGTTTGATGTGATGTTACATATTTT
TTTTGTCGTGTAAAGCTATTTTTAGTGTTTTTACTTACGAGTACATTATT
AGCCGTGACGTTCCAAACTGGTTCGGGGGCCAGGGGATAATCGTCAACCT
CTTAGTGTGTGATACTTCGGTCGCGTGGAGTCTATTGGTCCTCAGATAAG
GTACAAAGTAGTGACTCCCTTGGGTTGTCCCGGGCTAATACAGGATAATG
GCGAGGAGGGTAAGTTGGCCTCGTTATCATCTTGCGCACTAGACTGTAGC
CTTTCTGAGGGGGACAAAAGCAGAGAACGAACTCGAATCAGATCAAATCT
ATCAAAGCACGAAGCTAAGACATTCGAAGCCAAACCACTCCAGAGGCAAA
AAAAAACATATAGACAAAACAGACAAAGACATGGCACAAGCGCAAACAGA
CAAAGGCATGGCACAAGCGCAGCCAGCCCAATAGCTTTTATGGTAATCTC
CGATCCTGCTGTGCCTTTTTTTCTTCTTCTTTTACTTGTATGTTTTTTCT
TACTTGACCACGCATGTTTTTTGTCGTTTTCGTTTTCTTTTTCTTTTGGT
CCTCAACGAACGCGAAGGCTGTGATGCAGGAGAACATGGTCATTGGCCAG
CTGGTGTTGGGAGGGCTTGTGTCAGACACGTAAGTGGTTTATGCTTTTGT
TTCTCCCCGTGCCGTTGATGGTGTTGCTGTTGTCGTTGTCGTCGCCGTCG
TTGTCGTTATTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGTTATTGTTGTTGCTGATGCTGATACTGATGATGTCAGCAGGGAAGA
CAAGCACGTTCGTTTTTACATGTAGATCGCTCCCTTGTGCACAAGCGTTG
CGTTGCACGGGTTGCGTTGCACTATGATACAGTACTGTTGTTGTATGTAC
TACCGTACTACTACTTTGCCAGAAATTTCTACTCTTGTGACCACGGACAG
AAGACCCGTGATTGGATACAACAGTAGTAGGCCAGTTGATTTGGAGTATG
TTATTTATTTATTCAAGTAGTACTCGTACTTGTAGTGTACATCGTACCCA
GTATTCGATATTTAGACATAACCATAATATCCTTCCCACCAGGCGAGAAA
ATCAGTACATGATAGCGATCGTTAGACAGCAAATTTCTCAGAAGTTTATT
ACTTGCTATTAGTACAGTGGGGTAATTAAGGTTAGGGTTGGGGTTAGTGC
TAGAGGTTCCTCGCATTTTCTGATAACCCACGTCTCTACACTATAAATGT
AATAAAATTAAAAATATATATATATATACGAAATCTCTTTAACGAACGGT
ATCACGACCTCGAGAAAATGCCAAATTACGCAGGCAGTTAGTTGGTTGTA
CCAGTATAAACAACAGTAGTAGTATCATAGTATGTACAACAGTGCAGCTT
CTTTTTCGAGAAAATGCTAAATTACGCAACCAGTTAGTTGGTTGTACCAG
TATAAAACAACAGTAGTATCATAGTATGTACAACAGTGCAGCTTCTTTTT
CGAGAAAATGCTAAATTACGCAGCCAGTTAGTTGGTTGTACCAGTATAAA
AAAACAACATTGTAGTATCATAGTATGTACAACAGCAGTGCAGCTTCTCC
TTCTTTTTTTTTTCATATCCCATTTATTTTATTCGCCCTATTTTTTCTCC
TGCTCCATCTCTGTTCGTATCTCAGATGCGGGGTCACATAGCAGGCACTC
CTCCCCCCTACCCCCTCCCCCTCCCCACTACTACTGTCTGTTGTACGCCC
CTATATTTTATGTGTTTGGCAACAAAAAAAAGGTACAAAGCAGGAGAAAT
CAGCACACAGTCCACTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAA
AAGTCGCCCATTCCACCCTACGACATCCAGTAGCGTACTCAGAGTCTGTA
CTGGATCTTCCACCCTAGAAAGACACGAAATTCCGTGGTCACAGGCTAAC
ATATCAAACAAATCGCAAAAAACATATAAAAAAGAAGAAAAATAAATAAA
ACAAATTAAAAAAAGATAGAGAAGAACAGAAAGAAAAAAGTCCACTATAT
AAGCACAATTCGCACAAGTTTGATGTGCTCTCGTAGCTCAGTTGGTTAGA
GCGGTTGCTTAGTAAGCAGCAGGTCCATGGTTCAACTCCGTGCGGGAGCT
TAACTTTTTTCTTTTTCGTATTTGGAATATGGTCCGTTGTATAATGCGTA
GCTCTGCGAGTACTACTGTTGTACCATACTTGTTGTAGTATTTGGAATAT
GATCCGTTGTAAAATGTGAAGCTCTGCGAGTACTACTGTTGTACCGTACT
TGTTGTAGTATGCAGTAGGCACGCATGCACCCGGCCGCGTCCGTGGTCTA
ATTGTTGTTGTTGTCTTCACATTAAAAGTCGCCCATTCCACCCTACGACA
TCCAGTAGCGTACTCAGAGTCTGTCTGGATCTTCCACCCTAGAAAGACAC
GAAATTCCGTGGTCACAGGCTAACATATCAAATAAATCGGAAAAAACATA
CAAAAAAGAAGAATATAAATAAGACAAAATAAAAAAAAAGAGATTAAAAA
AAAAAAAAAAATGGATAAGCTAAAAACCTATTAAGGTCGAGGTCGCAAGT
TCGAGCCCCCCCCGAGAAACTTTTTTCTTGTGAAACGAATCGACTGCAGA
AAGTGTTCCACCTTTCTCCCGATAAAAATATAGTACATCAGCAGCGACGT
TTCAAACTGGTTCGAGAGTCAAATGGTAATCGTCAACTTCACTGCCTGTG
TGATAATTCGGTCGCCCGTATGGTATCTGTCCTGAGATAAGGATGTACTT
CAAGCATTAGAGTATTCTCCAGTTTGTACATTAATCCCCACCCACCCACC
CACCCACATGCTGTGTGTCGTCCGTCTCCGGTGCTCTCACCGTTCTTTCC
GAACAAAACCGTAACAACATCAACAACAAACCAATCCAACAACAAAAAAG
GACGAAAAATGTTTACAGCAGGGTGCTTAAGCACTGCGGCGCCAAGATCT
ACCCGCGCGTTCACCCGGCGCTGACAGAATCGGTGGGTGACGCTCGAGTG
ATAAACCTGTCCTCTGCCAGGGCCGTCGAGCTGTTCGAGGGAAGTCGCCG
AGCTGGCACAGGTACAGTCGGGGCTTGAAGGGGAGGGTGGGGAGGGGGGG
TATTATTACCGTGTTTATTATTGCCAGGAAGAGGTGCTCGCCTCCTTTTC
TGTCGAACTAGGCGCCGGCAAAAAAAACCCGATTCGCTTCGCTCGGCATT
TTTCACCTCATATTATATTTTTACATCATTTTGTTTTATTATTATTTTTT
GTTTACTTTTTTTGGTGTATGTTTCATCTTATGTCATTCGTCCCTTGTTA
ACAATTTTTTCAATGTCCCTGATTTTTGGCGAAAGATGGTGGTTGACGGT
CAAAAATATCAAAAAAAAGCCGTCAAAGCCTTTGTCGGGTTAATGAACTA
GTTTTAGAGAAAGGGATTCCTTGACTGGCCATCCGTCAAAAGGGGTAAAA
CTGCCGTTTCCCCCAATATTGGATTTTTATTTTTTGGCGTTATTACAATA
AAACGGGGTCACAGCGTTGAGCCTCACCCTCCCCAACCCGGACCCCGCTG
ATAAACGCTCCCCTAGGCCCGTTGAAGTATCGAATTATGTACTATAACTA
GCAAAAAAAGCTAAATAAACAAATAGAAGAGATAAAACCGTATCGGTGGC
CCTTTTAGCCCTAACCAATGGGAGCACCCGTCATTTTATTTTATTTATTT
ATTTATTTTTCCTTCACTTCATCTCCTGCGCGCACGTCTCCAACGGCTGT
ATTTGTATTTTTATGTAACGGTGTGCTCATCATGTTTGGGGTTATTGTGC
GATTAAACCGTTGGGTGTGTGTTCCGTGCAGGAGGAAGAGAAGGATCCCC
CGAGTTACCGCCCCTCGACTGGCT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10218:2001..8674-

>mRNA_D-dudresnayi_contig10218.252.1 ID=mRNA_D-dudresnayi_contig10218.252.1|Name=mRNA_D-dudresnayi_contig10218.252.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at D-dudresnayi_contig10218:2001..8674- (Desmarestia dudresnayi DdudBR16 monoicous)
AAGGGCTTGAAGGTTCAGTCGTGGTCGCTCAATGGATCCATCAAGGGCGG
CCTAGGGGAGATGCGAACCACGCTCATGCAGAAGGGCTTGAAGGTTCAGT
CGTGGTCGCTCAATGGATCCATCAAGGGCGGCCTAGGGGAGATGCGAACC
ACGCTCATGCAGGCTGTGATGCAGGAGAACATGGTCATTGGCCAGCTGGT
GTTGGGAGGGCTTGTGTCAGACACGCTGTGATGCAGGAGAACATGGTCAT
TGGCCAGCTGGTGTTGGGAGGGCTTGTGTCAGACACGACGAAAAATGTTT
ACAGCAGGGTGCTTAAGCACTGCGGCGCCAAGATCTACCCGCGCGTTCAC
CCGGCGCTGACAGAATCGGTGGGTGACGCTCGAGTGATAAACCTGTCCTC
TGCCAGGGCCGTCGAGCTGTTCGAGGGAAGTCGCCGAGCTGGCACAGGAC
GAAAAATGTTTACAGCAGGGTGCTTAAGCACTGCGGCGCCAAGATCTACC
CGCGCGTTCACCCGGCGCTGACAGAATCGGTGGGTGACGCTCGAGTGATA
AACCTGTCCTCTGCCAGGGCCGTCGAGCTGTTCGAGGGAAGTCGCCGAGC
TGGCACAGGAGGAAGAGAAGGATCCCCCGAGTTACCGCCCCTCGACTGGG
AGGAAGAGAAGGATCCCCCGAGTTACCGCCCCTCGACTGG
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