mRNA_D-dudresnayi_contig10213.250.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10213.250.1
Unique NamemRNA_D-dudresnayi_contig10213.250.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10213.250.1 vs. uniprot
Match: D8LNX6_ECTSI (NADH dehydrogenase (Ubiquinone) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX6_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 4.160e-32
Identity = 74/132 (56.06%), Postives = 90/132 (68.18%), Query Frame = 3 
Query:  357 KMSLQTPPQRKTQKKPETGXXXXXXXXXXXXXXEERDGSGVGVKKRVLGVKESDERDLMWKVNVNGDDVLALADRAIDTAEDIFMHVTRAFKPAAKMNLPLEPGDE--PLMATKKERVVVLGTGWGGHAISK 746
            KMS+QTPP+    K+PE G                   +       VLG K  +E+D+MWK+ V+ +DVLA ADRAIDTAED+FMH TRAFKPAA+MNLPL+ G++  PL ATKKER+VVLGTGWGGHAISK
Sbjct:   15 KMSVQTPPK---PKEPEFGEGRVADEELLSVIELAGRKAAAAGFLPVLGAKAKEEQDIMWKLKVSPEDVLAFADRAIDTAEDVFMHATRAFKPAARMNLPLQDGEDAPPLTATKKERIVVLGTGWGGHAISK 143
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BLAST of mRNA_D-dudresnayi_contig10213.250.1 vs. uniprot
Match: A0A835ZEN6_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEN6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.800e-7
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  528 LMWKVNVNGDDVLALADRAIDTAEDIFMHVTRAFKPAAKMNLPLEPGDEPLMATK---KERVVVLGTGWGGHAISK 746
            L +K+ ++  D LA + RA+DT ED+ +H+ RA++P A   L L+      ++T+   K R+VVLGTGWGGHA+ K
Sbjct:   74 LFFKLQLDAADFLAFSGRALDTVEDVLLHLRRAYEPKALGALNLQS-----LSTRQGAKPRLVVLGTGWGGHALVK 144
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BLAST of mRNA_D-dudresnayi_contig10213.250.1 vs. uniprot
Match: A0A835YW83_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW83_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.080e-6
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 3 
Query:  519 ERDLMWKVNVNGDDVLALADRAIDTAEDIFMHVTRAFKPAA------KMNLPLEPGDEPLMATKKERVVVLGTGWGGHAISK 746
            ++DL  K+ ++  D +A + RA+DT ED   H+ R+++P A      K +L  + G +P       R+VVLGTGWGGHA+ K
Sbjct:    6 DKDLFLKLELDYADFIAFSGRAVDTVEDALTHLRRSWEPKALGALNIKRDLSTQEGAKP-------RLVVLGTGWGGHALVK 80
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10213.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNX6_ECTSI4.160e-3256.06NADH dehydrogenase (Ubiquinone) n=1 Tax=Ectocarpus... [more]
A0A835ZEN6_9STRA2.800e-743.42NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835YW83_9STRA3.080e-639.02NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10213contigD-dudresnayi_contig10213:509..4081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D8LNX6
KEGG koko:K03885,ko:K17871
KEGG Pathwayko00190,map00190
EggNOG free text desc.Oxidoreductase
EggNOG OGsCOG1252@1,KOG2495@2759
EC1.6.5.9,1.6.99.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size748
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10213.250.1prot_D-dudresnayi_contig10213.250.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10213 509..3926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.21749-CDS-D-dudresnayi_contig10213:508..7091622927520.21749-CDS-D-dudresnayi_contig10213:508..709Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10213 509..709 -
1690556790.76611-CDS-D-dudresnayi_contig10213:508..7091690556790.76611-CDS-D-dudresnayi_contig10213:508..709Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10213 509..709 -
1622927520.229511-CDS-D-dudresnayi_contig10213:3536..39261622927520.229511-CDS-D-dudresnayi_contig10213:3536..3926Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10213 3537..3926 -
1690556790.7777505-CDS-D-dudresnayi_contig10213:3536..39261690556790.7777505-CDS-D-dudresnayi_contig10213:3536..3926Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10213 3537..3926 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.241192-UTR-D-dudresnayi_contig10213:3926..40811622927520.241192-UTR-D-dudresnayi_contig10213:3926..4081Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10213 3927..4081 -
1690556790.7863173-UTR-D-dudresnayi_contig10213:3926..40811690556790.7863173-UTR-D-dudresnayi_contig10213:3926..4081Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10213 3927..4081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10213.250.1

>prot_D-dudresnayi_contig10213.250.1 ID=prot_D-dudresnayi_contig10213.250.1|Name=mRNA_D-dudresnayi_contig10213.250.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=197bp
MAKHANCHYCCCRPRCYWACIATAGCLVLALAPQGQAFLGTPLRTASVLT
RHDARLADHLGEETSLPKMSLQTPPQRKTQKKPETGGAEAAPPPLSGPPE
EERDGSGVGVKKRVLGVKESDERDLMWKVNVNGDDVLALADRAIDTAEDI
FMHVTRAFKPAAKMNLPLEPGDEPLMATKKERVVVLGTGWGGHAISK
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mRNA from alignment at D-dudresnayi_contig10213:509..4081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10213.250.1 ID=mRNA_D-dudresnayi_contig10213.250.1|Name=mRNA_D-dudresnayi_contig10213.250.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3573bp|location=Sequence derived from alignment at D-dudresnayi_contig10213:509..4081- (Desmarestia dudresnayi DdudBR16 monoicous)
AACCCAACCCACATTTTCAAACACACTAGAACAAAACAGAGCGCGCACCT
ACCACGACTCTACTACTACTGCTGCTGTGCTACTATTGTGTTGCGACCCC
TCTATACACCCCGTTCAACTCGCGTGCTGCAACAGACAGCAAGGACGACG
GCAGCATGGCGAAACACGCGAACTGCCACTACTGCTGCTGCAGACCACGT
TGTTATTGGGCATGCATCGCCACGGCTGGGTGCTTGGTTCTCGCACTCGC
CCCGCAAGGGCAAGCGTTTTTGGGCACCCCTCTTCGAACGGCGTCAGTAT
TGACCCGCCATGATGCAAGGTTGGCGGATCACCTCGGAGAGGAGACCAGC
CTCCCAAAGATGTCCCTCCAGACACCACCGCAGCGGAAGACACAGAAGAA
GCCCGAGACGGGCGGGGCAGAGGCTGCTCCTCCTCCTCTGAGTGGTCCCC
CAGAAGAAGAGCGGGATGGCAGTGGTGTAGGAGTGAAGAAACGAGTACTT
GGAGTCAAGGAGTCTGACGAGCGGGATCTTATGTGGAAAGTAAATGTAAG
CAATGACGCTGCTGTGAGTAAGTATGGCACATGTGGATACAGTACAGTAG
TAGTACTACTATTAATACCGTTTTTCTCGTGTTGTTCTGTATGTAGCGTG
TGCGTGTCGCCATTCGCTTCGACGCTCTCTCTTGCCGTATAATAGGCGCG
TGCATGCTGCGGTGGTGCTGCCGGCGCTGTTTTGTGTAGCTACTATTATA
TGATACCGTGGGATGTTTTCATTTGACTGACCAGTGACGCACTGCTGTTG
TTGCGTCTCGGTGTTTCCTCGCCAAACTACGGCAACATCTCGTATCTCAA
GGATCATTGGTACCTGGTACTACAGAGTACTACTACTGTTGTTGTACTAC
TGTAAGTATTGTTTTTTCTTGAAGAGTATTATACAGTAGATGTCTGCATG
TGTCATCATGACCGTTATGCGTTTCACCATTCGCTTCGAACTCTACGGTG
CTGTTTCGGACGGTATTGCATGGGGGCGCTTTCTTCGGTGTGAATGCTGC
CTGCCATAGGCTCGCTCTTTCCTCCCGTCGAACTATCTTATCATGCGCCC
GGAGAGATTTTCGCTTGATTATGTGATCATCATGAGCATAATATGTCATC
GTGACAAGTCTCGTTTTACCACACGATGGTATCGTACCGGACCGGTGGAG
TTTGTCTCCCTCGGTGACTAACTACATCTGCAGTGCAGGAGCGAAAGGCA
GACCGACGTACAATGACTGACCGCAGTAACTGACGTCAATGTTGTGTTAT
ACCACAATGGTTGAACAGGCCTGCATCGGCAATCAGACGAAGCTTGCTGT
GGAAGGTTGGGTGGGAGCATGGGCTTTAGTTTTTTGTTTTTTTTTTACCC
GTCCACCGGAAGTAAAACAAAAACAAAGAAGAACCTGGTGGTAACTGTTT
TATTTCACAGTAAAAGAAAGTATCTGCTGCCCTGCGTCTGCTCGTCCCTC
ACATCAATGCCCCAAGACACGGCAATATCATAGCACACTCCAAAGCGCGC
AGAGGCAATGCAAAGATCCTGCCGTACTCGATGCGCTGCCGTAAACACAG
AACACGAAGCTTCATGCAACGCGTGTTATTGTGGGTGAACACACACCGCG
CTGGCTTTTTTTGTGAGTCATTTGCGCCGCCCTTGTACGCGTATTATACG
GTCCTGCTACTACTACTGTACTGTTGTAGAGGGTGTTCGAGGTAGTTGGA
TGATTCTTTGACTTGATATTAGAATGACCGGATCGATCCGGGCTGCAGTA
TTTGTAAGACATTCAGTCGACGCATCTGTCGAGGCATCATGATCCTTCCT
GACCGTGATGGTAAAATCATTCCTCTCGATGCACCCGCGGCGAATCACAC
ACTTGATTGTACGAGTATTAATCGTTTGTCCGCCGGGCTCGTGCTAAAAA
GGTCCGCCGAAAAAGACGGTGCCACCGTCCCACTCCTGCCACTGCCCCCA
CCTGCTTGTGCCTAGCCGACGGCGGGGGGCTGGTTACTTCCCGTTCCCGG
GTTTGGCGGAGTTCCCGAGTTGTGACAGGCGTTGCGACCCCGGGGATGGT
CTTGTTTCGTCCCCTGGTTTGGTGTTTTTTGTTTTTGCGGCGTTTCCCCA
CCATGGAAGGCGTTTTTACATTCCCATCCACGGGTTTGTCGAAGTTCGCG
GATCGTGGAAGTCGTTTTTTGACCCGGGGATCCCCGAGTTTACCGGAGGC
GTTCCGAGTTTTGCAAGGGCCACCCTTAAGACGACGTTGAGGCTTGCTTG
CTCGTCATTCGTTTTGCGCCATCGGCAAGGCATGCGTTGCGTCGATTTTC
AGGGTGTTTTTTCGTTATTTTTTGTTTTTTCATTATTTCTGCCGTGGTGC
ATCTGATGAGGACCAAGTACACGAACCTATGGAAGTTCCGTTCTCAGATG
TCTGCGCTGCACACCAGGTCGCCGTGTGATGTTATGGGTCGTCCATCCAC
GAGGAAGGCCTTCTGGGGAGGGTAGGGCGGGGGTGGGGGTGGGGGGGGGT
GTTGATCACGTGATCATGCCATCACACATAACGTCATTCTGCCAGCACTC
CAGACGGCAGTAAAATTGTATCATTCTCTTTGTCTTGTTCTACCGTGCTT
CGTATATACGGTGCAGGCAGCACTCCAGACAGCAACTGCTGTAGACAGCA
GCCACGAGTTCGTTAGTAGTGGGGACGGGGGGAGAACACGGTGGGTGTCG
TAGTCGAATGGATACCTGCGGTAGTGTTACTACGTCAGTTCACACATCGC
CCAGTATGAGTTGGTGTACCTATTCGGTCCCGTGTACCCCTTCTTTTGCT
TTTTTCTGTGTTTTCCGGATCTTCCTACATAGGGCTCAGCACTTGTGTGG
CCACGGGCTAGATCTTGGACGATGAGCTAATGTGTGAATCAATACAATAC
ATACATTCGACGATAAAATATTTATTGGCAAAGGAGAAATAATTAGTGGG
ATGTGGGGAGGACTAATGTTATTTCTCAAGTGTTTTCTTCGACCCTCCCC
GTTTTCCCGGTGGCAACTAACATCCAACTAACTCTCTAGAACGCCAATAA
TTAAATAAACGCACAATTTTTTTTTTTTTTTCCCGACGACGGGGAGACGA
AAAATAAAGGAAAAATGCGCGACGCATAATATTCCCGTAGTATAACTATA
TCTGAGAATTGGTTCACTTGATTTTCAACAACCAAATTACATCCAAACCA
GAACACAGTAACATCAAAAGAATATACATACAGTAGTATATGGATCCTGC
CATATCATACGTCTTGTGTCTAAAACTCGAAAAGTAATAATCGTAAGTCC
TATATGCTCACTCCCTCGCCAGGTTAACGGCGATGACGTCCTAGCCTTAG
CGGATCGAGCCATCGACACCGCCGAAGACATCTTCATGCACGTCACTCGG
GCCTTCAAGCCCGCGGCCAAGATGAACCTGCCCCTTGAGCCGGGAGACGA
GCCGCTGATGGCTACGAAAAAGGAGAGAGTGGTTGTGCTGGGCACTGGTT
GGGGCGGACACGCGATCAGCAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10213:509..4081-

>mRNA_D-dudresnayi_contig10213.250.1 ID=mRNA_D-dudresnayi_contig10213.250.1|Name=mRNA_D-dudresnayi_contig10213.250.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at D-dudresnayi_contig10213:509..4081- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGAAACACGCGAACTGCCACTACTGCTGCTGCAGACCACGTTGTTA
TTGGGCATGCATCGCCACGGCTGGGTGCTTGGTTCTCGCACTCGCCCCGC
AAGGGCAAGCGTTTTTGGGCACCCCTCTTCGAACGGCGTCAGTATTGACC
CGCCATGATGCAAGGTTGGCGGATCACCTCGGAGAGGAGACCAGCCTCCC
AAAGATGTCCCTCCAGACACCACCGCAGCGGAAGACACAGAAGAAGCCCG
AGACGGGCGGGGCAGAGGCTGCTCCTCCTCCTCTGAGTGGTCCCCCAGAA
GAAGAGCGGGATGGCAGTGGTGTAGGAGTGAAGAAACGAGTACTTGGAGT
CAAGGAGTCTGACGAGCGGGATCTTATGTGGAAAGTAAATATGGCGAAAC
ACGCGAACTGCCACTACTGCTGCTGCAGACCACGTTGTTATTGGGCATGC
ATCGCCACGGCTGGGTGCTTGGTTCTCGCACTCGCCCCGCAAGGGCAAGC
GTTTTTGGGCACCCCTCTTCGAACGGCGTCAGTATTGACCCGCCATGATG
CAAGGTTGGCGGATCACCTCGGAGAGGAGACCAGCCTCCCAAAGATGTCC
CTCCAGACACCACCGCAGCGGAAGACACAGAAGAAGCCCGAGACGGGCGG
GGCAGAGGCTGCTCCTCCTCCTCTGAGTGGTCCCCCAGAAGAAGAGCGGG
ATGGCAGTGGTGTAGGAGTGAAGAAACGAGTACTTGGAGTCAAGGAGTCT
GACGAGCGGGATCTTATGTGGAAAGTAAATGTTAACGGCGATGACGTCCT
AGCCTTAGCGGATCGAGCCATCGACACCGCCGAAGACATCTTCATGCACG
TCACTCGGGCCTTCAAGCCCGCGGCCAAGATGAACCTGCCCCTTGAGCCG
GGAGACGAGCCGCTGATGGCTACGAAAAAGGAGAGAGTGGTTGTGCTGGG
CACTGGTTGGGGCGGACACGCGATCAGCAAGGTTAACGGCGATGACGTCC
TAGCCTTAGCGGATCGAGCCATCGACACCGCCGAAGACATCTTCATGCAC
GTCACTCGGGCCTTCAAGCCCGCGGCCAAGATGAACCTGCCCCTTGAGCC
GGGAGACGAGCCGCTGATGGCTACGAAAAAGGAGAGAGTGGTTGTGCTGG
GCACTGGTTGGGGCGGACACGCGATCAGCAAG
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