mRNA_D-dudresnayi_contig10212.249.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10212.249.1
Unique NamemRNA_D-dudresnayi_contig10212.249.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.380e-31
Identity = 72/149 (48.32%), Postives = 95/149 (63.76%), Query Frame = 1 
Query:    1 ETITIGRSTRLVSIVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFGGAADIAVGTRFDGAGSHIRYRFVQEAARPPSSSRKRPPPNGPSASAVSRTAQPPKLQWRRTGDNSKAGKSLPNG 447
            E+  +GRS++   + LD  PT TISR+HAEI   KG +G   + ++DL STNGVFVN  KV+E  L HGD+VQFGGAADI VGTRF G GS IRYRF  + A  P+++ KR   + P A A +R    PK+    T D +   +++ NG
Sbjct:   28 ESTVLGRSSKTCDVTLDAAPTKTISRKHAEIFCGKGKRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSRIRYRFEHKLAGSPNTNSKRRRGSNPDAPATNR----PKIVRADTLDAADTLRAISNG 172
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.800e-26
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:    1 ETITIGRSTRLVSIVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFGGAADIAVGTRFDGAGSHIRYRFVQEAARPPSSSRKRPPPNGPSASAVSR 372
            E+  +GRS+R   + LD  PT TISR+HAEI    G +G   + ++DL STNGVFVN  KV+E  L HGD+VQFGGAADI VGTRF G GS IR      A  P  +S++R  PN P A A +R
Sbjct:   43 ESTVLGRSSRTCDVTLDAAPTKTISRKHAEIFCGNGRRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSRIRC----SARSPTPNSKRRRGPN-PDAPATNR 161
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A538CVJ5_9ACTN (FHA domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CVJ5_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 4.700e-9
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    7 ITIGRSTRLVSIVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFGGAADI 240
            +TIGR   L    + L  TN +SR+HAE+  R    G   F + DL STNG FVNGV++ +H L  GD++ FGGAA I
Sbjct:   45 LTIGR---LPECTITLADTN-VSRKHAEV--RPDGAG---FVLSDLGSTNGTFVNGVRITQHELADGDVITFGGAAKI 113
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A7S3UZM3_9STRA (Hypothetical protein n=3 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UZM3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.690e-8
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:   70 ISRRHAEIVYRKGHQ--GTD--------------------IFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFGGAADIAVGTRFDGAGSHIR--------YRFVQE 300
            ISR+HA+I YR+ H+  GT+                     + ++DL STNG+ VNGV+V+E+ L   DIV FGGAA + +G+      +H R        YRFV E
Sbjct:  414 ISRKHAQIKYRRIHRLIGTEGVTDEADDLSEADQNQEYEHAWVIRDLGSTNGILVNGVRVREYRLRDSDIVSFGGAATVELGSSVQ---THKRKPVDSIFLYRFVCE 517
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A5S4ZWP6_9FIRM (Type III secretion system (T3SS) inner membrane Yop/YscD-like protein n=1 Tax=Desulfallas thermosapovorans DSM 6562 TaxID=1121431 RepID=A0A5S4ZWP6_9FIRM)

HSP 1 Score: 57.4 bits (137), Expect = 6.430e-7
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    7 ITIGRSTRLVSIVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFG 225
            +TIGR   +  I L   P N+ISRRHA ++ R G      F ++D +STNG +VNGVKV +  L HGD+V+ G
Sbjct:  174 VTIGRG-EICDICL---PDNSISRRHA-VINRTGRH----FVIRDRSSTNGTYVNGVKVAQIELSHGDVVKMG 237
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A2E4X269_9DELT (FHA domain-containing protein n=2 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E4X269_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 2.270e-6
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   58 PTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFG 225
            P + +SR HA+IV +K       F V+DL STNG FVNGV++K   L  GD +QFG
Sbjct:   58 PDSQVSRHHAQIVRQKSE-----FVVEDLGSTNGTFVNGVRIKRCRLTPGDQLQFG 108
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A4V0I7M4_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0I7M4_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 2.850e-6
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 ETITIGRSTRLVS--IVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVK--EHSLEHGDIVQFGGAADIAVG 249
            E+ TI R+ RL S  IVLD    +++SRRHAE+  R G +G   + V+DL STNG +VNGV++   EH L   DIVQFG  A I  G
Sbjct:   20 ESETILRAGRLASLEIVLD---DSSVSRRHAEV--RLGDRG---WYVRDLESTNGTYVNGVRMGPGEHPLHQRDIVQFGKVAVIVEG 98
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A7V3S1M8_9DELT (FHA domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3S1M8_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 3.090e-6
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:    7 ITIGRSTRLVSIVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFGGAADIAVGTRFDGA 267
            +TIGR  +L +I L+    + +SR+H  I Y         F VKDLASTNGVFVNG K+K+  L  GD +Q GG     + +R  GA
Sbjct:   61 LTIGRD-KLCTISLN---DSRMSRQHGAIFYLAPD-----FYVKDLASTNGVFVNGKKIKQVKLNSGDQLQMGGTLFEFIVSRLPGA 138
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A5C6B376_9BACT (Response regulator PleD n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6B376_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 3.160e-6
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 ETITIGRSTRLVSIVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFG 225
             T+ +GR  R   I+    P +++SR+HAE++     +G D + ++DLASTNG FVNG  + +H L  GD ++ G
Sbjct:   64 HTLVMGRDGRCELIL----PDHSVSRKHAELI-----RGEDGYMIRDLASTNGTFVNGQAIDQHLLASGDTIRLG 129
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BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Match: A0A2N2I400_9DELT (FHA domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20 TaxID=2013748 RepID=A0A2N2I400_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 5.090e-6
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    7 ITIGRSTRLVSIVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLASTNGVFVNGVKVKEHSLEHGDIVQFG 225
            I +GRS  L  ++ +    + +SR+HA I +    QG DI+ ++DLASTNG FVNG K+K   L  GD V  G
Sbjct:   43 IHVGRSNDLDMVLAE----DMVSRKHARIAF----QGEDIY-IEDLASTNGTFVNGEKIKRSKLREGDRVLIG 106
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10212.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7R3_ECTSI2.380e-3148.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYS2_9PHAE1.800e-2652.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A538CVJ5_9ACTN4.700e-947.44FHA domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S3UZM3_9STRA9.690e-837.38Hypothetical protein n=3 Tax=Aplanochytrium stocch... [more]
A0A5S4ZWP6_9FIRM6.430e-746.58Type III secretion system (T3SS) inner membrane Yo... [more]
A0A2E4X269_9DELT2.270e-650.00FHA domain-containing protein n=2 Tax=Myxococcales... [more]
A0A4V0I7M4_9BACT2.850e-649.43Uncharacterized protein n=1 Tax=Gemmataceae bacter... [more]
A0A7V3S1M8_9DELT3.090e-643.68FHA domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A5C6B376_9BACT3.160e-638.67Response regulator PleD n=1 Tax=Stieleria varia Ta... [more]
A0A2N2I400_9DELT5.090e-643.84FHA domain-containing protein (Fragment) n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10212contigD-dudresnayi_contig10212:8106..9283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7G7R3
EggNOG free text desc.Forkhead associated domain
EggNOG OGs2CZV7@1,2SBTG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size474
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10212.249.1prot_D-dudresnayi_contig10212.249.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10212 8106..9283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.1640627-CDS-D-dudresnayi_contig10212:8105..82981622927520.1640627-CDS-D-dudresnayi_contig10212:8105..8298Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10212 8106..8298 -
1690556790.732062-CDS-D-dudresnayi_contig10212:8105..82981690556790.732062-CDS-D-dudresnayi_contig10212:8105..8298Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10212 8106..8298 -
1622927520.1748672-CDS-D-dudresnayi_contig10212:8641..87781622927520.1748672-CDS-D-dudresnayi_contig10212:8641..8778Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10212 8642..8778 -
1690556790.741172-CDS-D-dudresnayi_contig10212:8641..87781690556790.741172-CDS-D-dudresnayi_contig10212:8641..8778Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10212 8642..8778 -
1622927520.18965-CDS-D-dudresnayi_contig10212:9139..92831622927520.18965-CDS-D-dudresnayi_contig10212:9139..9283Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10212 9140..9283 -
1690556790.752464-CDS-D-dudresnayi_contig10212:9139..92831690556790.752464-CDS-D-dudresnayi_contig10212:9139..9283Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10212 9140..9283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10212.249.1

>prot_D-dudresnayi_contig10212.249.1 ID=prot_D-dudresnayi_contig10212.249.1|Name=mRNA_D-dudresnayi_contig10212.249.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=158bp
ETITIGRSTRLVSIVLDLTPTNTISRRHAEIVYRKGHQGTDIFAVKDLAS
TNGVFVNGVKVKEHSLEHGDIVQFGGAADIAVGTRFDGAGSHIRYRFVQE
AARPPSSSRKRPPPNGPSASAVSRTAQPPKLQWRRTGDNSKAGKSLPNGG
KSSAADLM
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mRNA from alignment at D-dudresnayi_contig10212:8106..9283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10212.249.1 ID=mRNA_D-dudresnayi_contig10212.249.1|Name=mRNA_D-dudresnayi_contig10212.249.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1178bp|location=Sequence derived from alignment at D-dudresnayi_contig10212:8106..9283- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGACGATAACGATCGGACGGAGTACGCGTCTGGTGAGCATCGTGCTGGA
CCTTACGCCGACCAACACCATATCGAGGAGGCACGCAGAGATAGTCTACA
GAAAAGGCCACCAGGGAACAGACATCTTCGCCGTAAAAGATCTGGTAGGC
ACACCATCTTTAGTGAAGTTGTTAGGCCTGATTCGTGGGACGTCCAGAGA
GCTGTCAGGGTCAAGGTCGTTGTACAAGCTGTACGGTGGAATGATATCAC
ATGTGTTTCCGAAGCTTGTGCCCAATCATTGTTAGTGCGCGGCACTTGCA
TCACGTCGCAACGATTCCCGATCGATTCAGGCATCGCCAACAAGGAAGCC
CTATTTTTGCACACGGTACCATTGCGGGGGCGTACTTGGCATATTTTAAC
GTAAGAAATTCCGGGCCGGTTCTTGCTGTGGATTCAAGCGTGGATTCAAG
CGCGGCCATCAGAACGCATGCGATTTTGCTTTGGTTTTGTTCATGACGGA
CGCAGGCATCTACGAATGGAGTGTTCGTCAACGGTGTCAAGGTTAAGGAG
CACTCTCTGGAGCACGGGGATATTGTGCAATTCGGGGGTGCGGCAGACAT
TGCTGTTGGCACTCGCTTCGATGGGGCTGGCAGTCATATCAGGTGCAAAG
TGGAGACATGCTTGTCCGTGCGTTTCGTGTTGTCGACGGCACCGTACAGT
CGGGTCACGTATGGTACTGTCTACTACTGTTTTCAATGCTATCACGCGAT
ATTTGGAAGGTCGTGATAGGATCCACTACAATGCGATGATAGTTGTACCA
TCCACGCGGGGTGCGTCAGGAAACGTGTATCAGTGCTCGGGAGTACAGCA
CAGCAGGCTGTAGTCTTGGACTCACGAATTTCCTTGCGAGAGTGTGAATG
CCGGCGTGAACCGCTGCCGTCGGGCTATCATACCTCCTCGATTGTGCTCA
CAGGTCCGAATGGACAATCGTTCCACACCCGCCAGGTACCGCTTCGTCCA
GGAGGCTGCACGTCCTCCCTCAAGCTCCCGGAAACGGCCGCCACCAAACG
GCCCTAGCGCTAGTGCCGTGTCGCGAACGGCGCAGCCACCGAAACTACAA
TGGCGTCGAACAGGCGATAACAGTAAGGCCGGGAAGTCCTTACCAAACGG
AGGAAAATCTAGCGCTGCCGACCTTATG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10212:8106..9283-

>mRNA_D-dudresnayi_contig10212.249.1 ID=mRNA_D-dudresnayi_contig10212.249.1|Name=mRNA_D-dudresnayi_contig10212.249.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at D-dudresnayi_contig10212:8106..9283- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGACGATAACGATCGGACGGAGTACGCGTCTGGTGAGCATCGTGCTGGA
CCTTACGCCGACCAACACCATATCGAGGAGGCACGCAGAGATAGTCTACA
GAAAAGGCCACCAGGGAACAGACATCTTCGCCGTAAAAGATCTGGAGACG
ATAACGATCGGACGGAGTACGCGTCTGGTGAGCATCGTGCTGGACCTTAC
GCCGACCAACACCATATCGAGGAGGCACGCAGAGATAGTCTACAGAAAAG
GCCACCAGGGAACAGACATCTTCGCCGTAAAAGATCTGGCATCTACGAAT
GGAGTGTTCGTCAACGGTGTCAAGGTTAAGGAGCACTCTCTGGAGCACGG
GGATATTGTGCAATTCGGGGGTGCGGCAGACATTGCTGTTGGCACTCGCT
TCGATGGGGCTGGCAGTCATATCAGGCATCTACGAATGGAGTGTTCGTCA
ACGGTGTCAAGGTTAAGGAGCACTCTCTGGAGCACGGGGATATTGTGCAA
TTCGGGGGTGCGGCAGACATTGCTGTTGGCACTCGCTTCGATGGGGCTGG
CAGTCATATCAGGTACCGCTTCGTCCAGGAGGCTGCACGTCCTCCCTCAA
GCTCCCGGAAACGGCCGCCACCAAACGGCCCTAGCGCTAGTGCCGTGTCG
CGAACGGCGCAGCCACCGAAACTACAATGGCGTCGAACAGGCGATAACAG
TAAGGCCGGGAAGTCCTTACCAAACGGAGGAAAATCTAGCGCTGCCGACC
TTATGGTACCGCTTCGTCCAGGAGGCTGCACGTCCTCCCTCAAGCTCCCG
GAAACGGCCGCCACCAAACGGCCCTAGCGCTAGTGCCGTGTCGCGAACGG
CGCAGCCACCGAAACTACAATGGCGTCGAACAGGCGATAACAGTAAGGCC
GGGAAGTCCTTACCAAACGGAGGAAAATCTAGCGCTGCCGACCTTATG
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