mRNA_D-dudresnayi_contig10211.248.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10211.248.1
Unique NamemRNA_D-dudresnayi_contig10211.248.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10211.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10211contigD-dudresnayi_contig10211:6809..9177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1499
Cds size1176
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10211.248.1prot_D-dudresnayi_contig10211.248.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10211 6809..8854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.020088-CDS-D-dudresnayi_contig10211:6808..78591622927520.020088-CDS-D-dudresnayi_contig10211:6808..7859Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10211 6809..7859 -
1690556790.654264-CDS-D-dudresnayi_contig10211:6808..78591690556790.654264-CDS-D-dudresnayi_contig10211:6808..7859Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10211 6809..7859 -
1622927520.0331867-CDS-D-dudresnayi_contig10211:8729..88541622927520.0331867-CDS-D-dudresnayi_contig10211:8729..8854Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10211 8730..8854 -
1690556790.6706192-CDS-D-dudresnayi_contig10211:8729..88541690556790.6706192-CDS-D-dudresnayi_contig10211:8729..8854Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10211 8730..8854 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.0456202-UTR-D-dudresnayi_contig10211:8854..91771622927520.0456202-UTR-D-dudresnayi_contig10211:8854..9177Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10211 8855..9177 -
1690556790.6809702-UTR-D-dudresnayi_contig10211:8854..91771690556790.6809702-UTR-D-dudresnayi_contig10211:8854..9177Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10211 8855..9177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10211.248.1

>prot_D-dudresnayi_contig10211.248.1 ID=prot_D-dudresnayi_contig10211.248.1|Name=mRNA_D-dudresnayi_contig10211.248.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=392bp
MSAAVVEKPAMDSSLQKKDGKSKSSAGGGVGNGAVGRWTTASDGAKTGAG
DGSGKIGISANGDRPSPPPTKKPAATSGVGGQSKKRRVIDDDDDDDALPP
APRERPSPAAGLASKQTAVSSSSSSGRGSGMNGSSSSTHFSEKKKIVVGP
SSRGSGGGGGAAGTKNGPSSNLAMSPKAVARGPTRSVVHDDDDDADLPVG
AILKKKQMRSSSNSVSGSGGSSGSIPKKSSFSKNGIKRESSATFQIPKRD
GLSSRPTPSGKPGSSSSPRAAGGSLSKGVGSGGRYGGDVGDSDFERKPNK
LKRPADPLGRRADEKDFQNEDPAKAARRKRKLEEERDRLREEARKKKRRD
MQGSGTLVRKSGSGSAVKPKVKPEPRSRGSASSLNQKTARSP
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mRNA from alignment at D-dudresnayi_contig10211:6809..9177-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10211.248.1 ID=mRNA_D-dudresnayi_contig10211.248.1|Name=mRNA_D-dudresnayi_contig10211.248.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2369bp|location=Sequence derived from alignment at D-dudresnayi_contig10211:6809..9177- (Desmarestia dudresnayi DdudBR16 monoicous)
TTATCCATTTGGCGGAAAGGAGGAGGAGGTGTTCCCAGTTCCCAGCGACC
GTCGACACTTTAGACAGAGGATAGTTGCCCCCAACAGAGGGCTGACTCGC
CATCTCTAGTTCCATCGGTTGAGGAGGTGCTATCTTCTAGCGCCGTCGGC
GTCAGGACATATCTTGGGAACCAGCTGGCATATCTCGGGATACATTCCTT
GTGTTTTTTCATTTTTTTCAGTGTTGCGTGTTGTGTTTTTTGCAGTGGAG
GACGTGGTCACTACGGCGGAGGTTGTTACAACAGGTTCAGGGTTAGTTGA
CAAACAAGAGGCCGGAGGGGGTAATGTCTGCTGCCGTCGTTGAGAAGCCC
GCGATGGATTCTTCTCTTCAGAAAAAAGACGGGAAAAGCAAGAGTTCGGC
TGGTGGTGGTGTTGGCAACGGTGCCGTTGGACGATGGACAACCGCCAGGT
ATTGTTTTGCGTCTCTCTCGTTGCGTGGGTATCGTTTTGGATCATTCCGT
CTCCCCACTATAAATAGTACTTCGAGTCTTGGAGTTAACAAGGACAGACT
ACCCTGCTGGCGGGGCAGAATTTTTCATCCACACGGAGTTCAAGGGCTTG
CTTTAGTCATTGGTGGCAATCGGTTGGCGTGACTTCGCGGGCCTGAGTTC
GGCGAGATTAGTACTACTAGTCACCGAATTTCGTTGACTAAAGCACACCC
CGGAAGTATTACTCGTACACAAGCTTGTGCTTATTTTTTTTATGTTGTGG
GGGAGGGGGCATGCCTTATTGCATCCCTGGTTTCCTGTAGCGAAATGTCA
GCGAACTCCGAGGCTTCGGCATTCTGTCGTTTTCTTGCTTCACAACCAGC
GATGTATGATATCGCGACGTTGTTGTTTATCGAATTGCCAGCTTGTCTTA
CAACTAATACCAATACAACAGTACAGTACATGGTATCGCATTATCTTGTT
CTGTTGAAAAACACAAGACACACGGTACTGGTGCGAGTATGTTGTAACCG
TGAATGCGCGGCAGACACACGACACCATTATTTAACCTACAACACTATAT
GACCGTGATATCGCCATCATACCGCTACAGACAATAGTAGAAAGTTACAG
CACCAGTATGCTCTGACATGTTCACAAATATTTGTGAGATGTCTGCTGCT
GCGCTACATACATGAATCCTGTATACATCGCCACAACAACAAACACCCAG
CATCATAGTGCGGCTGCTACATATTATACCTCTCACAACAAACAACGCCC
GCGTATGCCGATGTATATCCCCATCAATTTCCTGATTTTGCTCACCCGAA
CCCAAAAACCATTCCAAGTGACGGAGCGAAGACCGGAGCGGGAGACGGAA
GCGGGAAGATAGGCATCAGCGCTAACGGCGATCGGCCATCGCCGCCGCCG
ACGAAAAAGCCGGCGGCGACCAGTGGCGTTGGCGGTCAGTCCAAGAAAAG
GCGAGTTATCGACGACGACGATGATGACGATGCCCTTCCGCCTGCCCCTA
GGGAACGGCCCTCGCCGGCGGCAGGGCTTGCCTCGAAGCAAACAGCTGTA
TCAAGTAGCAGCAGCAGCGGGAGGGGGAGTGGGATGAACGGGAGCTCGTC
GTCGACCCATTTTTCTGAGAAGAAGAAAATTGTGGTGGGACCGAGCAGTA
GAGGGAGTGGTGGAGGAGGAGGGGCAGCAGGCACAAAAAATGGACCCAGT
AGTAACTTAGCAATGTCTCCTAAGGCTGTGGCCAGAGGACCTACTAGGAG
CGTTGTGCATGACGACGACGATGACGCCGACCTTCCGGTGGGCGCCATCT
TGAAGAAAAAGCAGATGAGGAGCAGCAGTAACTCGGTGTCCGGCAGCGGT
GGCAGCTCCGGCAGTATCCCGAAGAAGTCGTCTTTCTCCAAGAACGGCAT
CAAGAGGGAATCGTCTGCAACCTTCCAGATTCCGAAGCGAGATGGACTGT
CGTCGCGGCCGACGCCGTCGGGAAAGCCAGGCTCGTCTTCCTCTCCGCGC
GCGGCGGGCGGCAGTCTCAGCAAAGGAGTTGGAAGCGGTGGTCGTTACGG
AGGCGATGTCGGCGACAGCGACTTCGAGCGCAAGCCCAATAAACTGAAGC
GACCAGCGGACCCCCTTGGCCGAAGGGCGGACGAGAAAGACTTCCAGAAT
GAGGACCCGGCAAAGGCCGCCCGCCGCAAGCGTAAGCTGGAAGAGGAGAG
AGACAGGCTTCGGGAAGAGGCTCGCAAGAAGAAGCGACGAGACATGCAAG
GCTCCGGCACCCTCGTACGGAAGAGCGGCTCCGGCAGCGCCGTGAAGCCT
AAAGTAAAGCCGGAGCCTCGGTCGAGGGGCTCAGCGTCTTCTCTTAACCA
GAAGACGGCCAGGTCGCCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10211:6809..9177-

>mRNA_D-dudresnayi_contig10211.248.1 ID=mRNA_D-dudresnayi_contig10211.248.1|Name=mRNA_D-dudresnayi_contig10211.248.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at D-dudresnayi_contig10211:6809..9177- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTGCTGCCGTCGTTGAGAAGCCCGCGATGGATTCTTCTCTTCAGAA
AAAAGACGGGAAAAGCAAGAGTTCGGCTGGTGGTGGTGTTGGCAACGGTG
CCGTTGGACGATGGACAACCGCCAGATGTCTGCTGCCGTCGTTGAGAAGC
CCGCGATGGATTCTTCTCTTCAGAAAAAAGACGGGAAAAGCAAGAGTTCG
GCTGGTGGTGGTGTTGGCAACGGTGCCGTTGGACGATGGACAACCGCCAG
TGACGGAGCGAAGACCGGAGCGGGAGACGGAAGCGGGAAGATAGGCATCA
GCGCTAACGGCGATCGGCCATCGCCGCCGCCGACGAAAAAGCCGGCGGCG
ACCAGTGGCGTTGGCGGTCAGTCCAAGAAAAGGCGAGTTATCGACGACGA
CGATGATGACGATGCCCTTCCGCCTGCCCCTAGGGAACGGCCCTCGCCGG
CGGCAGGGCTTGCCTCGAAGCAAACAGCTGTATCAAGTAGCAGCAGCAGC
GGGAGGGGGAGTGGGATGAACGGGAGCTCGTCGTCGACCCATTTTTCTGA
GAAGAAGAAAATTGTGGTGGGACCGAGCAGTAGAGGGAGTGGTGGAGGAG
GAGGGGCAGCAGGCACAAAAAATGGACCCAGTAGTAACTTAGCAATGTCT
CCTAAGGCTGTGGCCAGAGGACCTACTAGGAGCGTTGTGCATGACGACGA
CGATGACGCCGACCTTCCGGTGGGCGCCATCTTGAAGAAAAAGCAGATGA
GGAGCAGCAGTAACTCGGTGTCCGGCAGCGGTGGCAGCTCCGGCAGTATC
CCGAAGAAGTCGTCTTTCTCCAAGAACGGCATCAAGAGGGAATCGTCTGC
AACCTTCCAGATTCCGAAGCGAGATGGACTGTCGTCGCGGCCGACGCCGT
CGGGAAAGCCAGGCTCGTCTTCCTCTCCGCGCGCGGCGGGCGGCAGTCTC
AGCAAAGGAGTTGGAAGCGGTGGTCGTTACGGAGGCGATGTCGGCGACAG
CGACTTCGAGCGCAAGCCCAATAAACTGAAGCGACCAGCGGACCCCCTTG
GCCGAAGGGCGGACGAGAAAGACTTCCAGAATGAGGACCCGGCAAAGGCC
GCCCGCCGCAAGCGTAAGCTGGAAGAGGAGAGAGACAGGCTTCGGGAAGA
GGCTCGCAAGAAGAAGCGACGAGACATGCAAGGCTCCGGCACCCTCGTAC
GGAAGAGCGGCTCCGGCAGCGCCGTGAAGCCTAAAGTAAAGCCGGAGCCT
CGGTCGAGGGGCTCAGCGTCTTCTCTTAACCAGAAGACGGCCAGGTCGCC
GTGACGGAGCGAAGACCGGAGCGGGAGACGGAAGCGGGAAGATAGGCATC
AGCGCTAACGGCGATCGGCCATCGCCGCCGCCGACGAAAAAGCCGGCGGC
GACCAGTGGCGTTGGCGGTCAGTCCAAGAAAAGGCGAGTTATCGACGACG
ACGATGATGACGATGCCCTTCCGCCTGCCCCTAGGGAACGGCCCTCGCCG
GCGGCAGGGCTTGCCTCGAAGCAAACAGCTGTATCAAGTAGCAGCAGCAG
CGGGAGGGGGAGTGGGATGAACGGGAGCTCGTCGTCGACCCATTTTTCTG
AGAAGAAGAAAATTGTGGTGGGACCGAGCAGTAGAGGGAGTGGTGGAGGA
GGAGGGGCAGCAGGCACAAAAAATGGACCCAGTAGTAACTTAGCAATGTC
TCCTAAGGCTGTGGCCAGAGGACCTACTAGGAGCGTTGTGCATGACGACG
ACGATGACGCCGACCTTCCGGTGGGCGCCATCTTGAAGAAAAAGCAGATG
AGGAGCAGCAGTAACTCGGTGTCCGGCAGCGGTGGCAGCTCCGGCAGTAT
CCCGAAGAAGTCGTCTTTCTCCAAGAACGGCATCAAGAGGGAATCGTCTG
CAACCTTCCAGATTCCGAAGCGAGATGGACTGTCGTCGCGGCCGACGCCG
TCGGGAAAGCCAGGCTCGTCTTCCTCTCCGCGCGCGGCGGGCGGCAGTCT
CAGCAAAGGAGTTGGAAGCGGTGGTCGTTACGGAGGCGATGTCGGCGACA
GCGACTTCGAGCGCAAGCCCAATAAACTGAAGCGACCAGCGGACCCCCTT
GGCCGAAGGGCGGACGAGAAAGACTTCCAGAATGAGGACCCGGCAAAGGC
CGCCCGCCGCAAGCGTAAGCTGGAAGAGGAGAGAGACAGGCTTCGGGAAG
AGGCTCGCAAGAAGAAGCGACGAGACATGCAAGGCTCCGGCACCCTCGTA
CGGAAGAGCGGCTCCGGCAGCGCCGTGAAGCCTAAAGTAAAGCCGGAGCC
TCGGTCGAGGGGCTCAGCGTCTTCTCTTAACCAGAAGACGGCCAGGTCGC
CG
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