mRNA_D-dudresnayi_contig1021.245.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1021.245.1
Unique NamemRNA_D-dudresnayi_contig1021.245.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1021.245.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.310e-6
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  841 GCTKMPSYGTEGSKKREFCAQHAKQGMVDINRREC 945
            GCTK PSYG  GSKK EFCAQHAK+GMV++  R C
Sbjct:  113 GCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRC 147
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BLAST of mRNA_D-dudresnayi_contig1021.245.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 7.070e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  844 CTKMPSYGTEGSKKREFCAQHAKQGMVDINRREC 945
            CTK P+YG  GSKKREFC+QHA+ GMV++N + C
Sbjct:    9 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_D-dudresnayi_contig1021.245.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 9.010e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  844 CTKMPSYGTEGSKKREFCAQHAKQGMVDINRREC 945
            CTK P+YG  GSKKREFC+QHA+ GMV++N + C
Sbjct:   69 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
[Close]
BLAST of mRNA_D-dudresnayi_contig1021.245.1 vs. uniprot
Match: D7G985_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G985_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.980e-5
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  841 GCTKMPSYGTEGSKKREFCAQHAKQGMVDI 930
            GC K PSYGT+GSKKREFCAQH++QGMV +
Sbjct:   13 GCMKRPSYGTDGSKKREFCAQHSQQGMVSM 42
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1021.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIE1_ECTSI3.310e-671.43EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FI73_ECTSI7.070e-664.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE9.010e-664.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G985_ECTSI1.980e-576.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1021contigD-dudresnayi_contig1021:5136..6380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1003
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1021.245.1prot_D-dudresnayi_contig1021.245.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1021 5261..6168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.7451043-UTR-D-dudresnayi_contig1021:5135..52601622927519.7451043-UTR-D-dudresnayi_contig1021:5135..5260Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1021 5136..5260 -
1690556790.4377968-UTR-D-dudresnayi_contig1021:5135..52601690556790.4377968-UTR-D-dudresnayi_contig1021:5135..5260Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1021 5136..5260 -
1622927519.776371-UTR-D-dudresnayi_contig1021:6168..63801622927519.776371-UTR-D-dudresnayi_contig1021:6168..6380Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1021 6169..6380 -
1690556790.4774084-UTR-D-dudresnayi_contig1021:6168..63801690556790.4774084-UTR-D-dudresnayi_contig1021:6168..6380Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1021 6169..6380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.7572393-CDS-D-dudresnayi_contig1021:5260..52981622927519.7572393-CDS-D-dudresnayi_contig1021:5260..5298Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1021 5261..5298 -
1690556790.446743-CDS-D-dudresnayi_contig1021:5260..52981690556790.446743-CDS-D-dudresnayi_contig1021:5260..5298Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1021 5261..5298 -
1622927519.7670238-CDS-D-dudresnayi_contig1021:5540..61681622927519.7670238-CDS-D-dudresnayi_contig1021:5540..6168Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1021 5541..6168 -
1690556790.4651713-CDS-D-dudresnayi_contig1021:5540..61681690556790.4651713-CDS-D-dudresnayi_contig1021:5540..6168Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1021 5541..6168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1021.245.1

>prot_D-dudresnayi_contig1021.245.1 ID=prot_D-dudresnayi_contig1021.245.1|Name=mRNA_D-dudresnayi_contig1021.245.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=222bp
MVDVRNRKCANQSCTKIPSLGRIRSKTPEFCAQHATQGMINLRSKKKCTD
QSCTKTPSYGTLEEGSKKSREFCAQHAKQGIVNLSNKKRCANQDCTKIPS
YGIEGSKKREFCVRHAKQGMVHLMNKKICANQGCTKMPSYGMEGSKKREF
CAQHAKQGMVDINRRECAYQDCIKRPWYGTEGSKNREFCAQHAKQGMVNL
RNVKRCANQGLHQDAVIWHRR*
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mRNA from alignment at D-dudresnayi_contig1021:5136..6380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1021.245.1 ID=mRNA_D-dudresnayi_contig1021.245.1|Name=mRNA_D-dudresnayi_contig1021.245.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1245bp|location=Sequence derived from alignment at D-dudresnayi_contig1021:5136..6380- (Desmarestia dudresnayi DdudBR16 monoicous)
GTTTGTTGTTGTTGTATCTCTCACAGATCGGGTCACAGATCTAGAAGCCA
CAACGCCGTGAGCCTGGTCTGTGCTCCCCACTAGACACCCAGGTGCACGC
TATATCCATCGGTGATAGCCGATCAGAAAATGGGAGCTGAAAGACCTTCG
CGAGTCAAACATATATAGCAAGAGCAGACCAGATTTCCTGCGCCCAGCAC
GCCAACCAGGGTATGGTCGACGTCCGCAACAGAAAATGCGCCAACCAGAG
TTGCACGAAGATCCCGTCATTAGGCAGAATTCGAAGCAAGACACCAGAAT
TCTGTGCCCAGCACGCCACGCAGGGCATGATCAACCTCAGGAGCAAGAAA
AAATGCACCGACCAGAGTTGCACCAAGACGCCATCATATGGCACGCTCGA
AGAAGGCAGCAAGAAGAGTCGAGAGTTCTGCGCCCAGCACGCCAAGCAGG
GCATAGTCAACCTCAGCAACAAGAAAAGATGCGCCAACCAGGATTGTACC
AAGATACCTTCATATGGCATAGAAGGTAGTAAGAAACGAGAGTTCTGCGT
CCGGCATGCCAAGCAGGGCATGGTCCACCTCATGAACAAGAAAATATGCG
CCAACCAGGGTTGCACCAAGATGCCGTCATATGGCATGGAAGGTAGTAAG
AAACGAGAGTTCTGCGCCCAGCACGCCAAGCAGGGCATGGTTGACATCAA
CCGGAGGGAATGCGCCTACCAGGATTGCATCAAGCGGCCATGGTATGGTA
CAGAAGGCAGCAAGAATCGAGAGTTCTGCGCCCAGCACGCCAAGCAGGGC
ATGGTTAACCTCAGGAACGTGAAAAGATGCGCCAACCAGGGTTGCACCAA
GACGACGTCATATTATTGCATAGAAGAAGGTAGCAAAAAGAAACGACAGT
TCTGCGCCCAGCACGCCAATAAGCAAGGCATGGTCAATCTCAGGAGCAAG
GTGAGTTGCGCCAACCAGGGTTGCACCAAGATCCCGTCATTTGGCGTTGA
AGGTAGTAAGAAGCGAGAGTTCTGCGCCCAGCACGCCAAGCAGGGCACGA
TCAAAGTCGGCAGAAGGACATGCGCTGACCAGGGTTGCACCAAGATGCCG
TCATATGGCACAGAAGGTAGTAAGAAACGAGAGTTCTGCGCCCAGCACGC
CAAGCAGGGCATGGTTGACATCAACCGGAGGGAATGCGCCTACCAGGATT
GCATCAAGCGGCCATGGTTCGGTATAGAAGGCAGCAAGAATCGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1021:5136..6380-

>mRNA_D-dudresnayi_contig1021.245.1 ID=mRNA_D-dudresnayi_contig1021.245.1|Name=mRNA_D-dudresnayi_contig1021.245.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at D-dudresnayi_contig1021:5136..6380- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTCGACGTCCGCAACAGAAAATGCGCCAACCAGAGTTGCACGAAGAT
CCCGTCATTAGGCAGAATTCGAAGCAAGACACCAGAATTCTGTGCCCAGC
ACGCCACGCAGGGCATGATCAACCTCAGGAGCAAGAAAAAATGCACCGAC
CAGAGTTGCACCAAGACGCCATCATATGGCACGCTCGAAGAAGGCAGCAA
GAAGAGTCGAGAGTTCTGCGCCCAGCACGCCAAGCAGGGCATAGTCAACC
TCAGCAACAAGAAAAGATGCGCCAACCAGGATTGTACCAAGATACCTTCA
TATGGCATAGAAGGTAGTAAGAAACGAGAGTTCTGCGTCCGGCATGCCAA
GCAGGGCATGGTCCACCTCATGAACAAGAAAATATGCGCCAACCAGGGTT
GCACCAAGATGCCGTCATATGGCATGGAAGGTAGTAAGAAACGAGAGTTC
TGCGCCCAGCACGCCAAGCAGGGCATGGTTGACATCAACCGGAGGGAATG
CGCCTACCAGGATTGCATCAAGCGGCCATGGTATGGTACAGAAGGCAGCA
AGAATCGAGAGTTCTGCGCCCAGCACGCCAAGCAGGGCATGGTTAACCTC
AGGAACGTGAAAAGATGCGCCAACCAGGATGGTCGACGTCCGCAACAGAA
AATGCGCCAACCAGAGTTGCACGAAGATCCCGTCATTAGGCAGAATTCGA
AGCAAGACACCAGAATTCTGTGCCCAGCACGCCACGCAGGGCATGATCAA
CCTCAGGAGCAAGAAAAAATGCACCGACCAGAGTTGCACCAAGACGCCAT
CATATGGCACGCTCGAAGAAGGCAGCAAGAAGAGTCGAGAGTTCTGCGCC
CAGCACGCCAAGCAGGGCATAGTCAACCTCAGCAACAAGAAAAGATGCGC
CAACCAGGATTGTACCAAGATACCTTCATATGGCATAGAAGGTAGTAAGA
AACGAGAGTTCTGCGTCCGGCATGCCAAGCAGGGCATGGTCCACCTCATG
AACAAGAAAATATGCGCCAACCAGGGTTGCACCAAGATGCCGTCATATGG
CATGGAAGGTAGTAAGAAACGAGAGTTCTGCGCCCAGCACGCCAAGCAGG
GCATGGTTGACATCAACCGGAGGGAATGCGCCTACCAGGATTGCATCAAG
CGGCCATGGTATGGTACAGAAGGCAGCAAGAATCGAGAGTTCTGCGCCCA
GCACGCCAAGCAGGGCATGGTTAACCTCAGGAACGTGAAAAGATGCGCCA
ACCAGGGGTTGCACCAAGATGCCGTCATATGGCACAGAAGGTAGGGTTGC
ACCAAGATGCCGTCATATGGCACAGAAGGTAG
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