mRNA_D-dudresnayi_contig10195.233.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10195.233.1
Unique NamemRNA_D-dudresnayi_contig10195.233.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10195.233.1 vs. uniprot
Match: D8LLU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU4_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 4.350e-26
Identity = 88/178 (49.44%), Postives = 99/178 (55.62%), Query Frame = 1 
Query:  817 NHQPRYNNGFTGMR----PAHPMQMHPAMD---------------------------VNGGPGMMFSRPSQAAPQHMNGGMMXXXXXXXXVVAVSNVQAMLEASSAEAGALALRVEHLVWGVEAMRAGLSMGQLDTLKTLLLDQVSRVDEAKLEQVRVQERCKSEEKASILQQLHQFQ 1257
            N  P  +NGF  M     P  PM MHPA +                           V+GG  MM +RP +         M         V +V+  Q MLE+SS +A ALALRVEHLVWG+EAM AGLSM QLDTLK +LLDQV RVDEAKLEQVRVQER KSEEK SIL QL  FQ
Sbjct:  711 NATPFGHNGFAPMPQPAGPPPPMHMHPARNSNSMAGDPSRAMXXXXXXXXXXXAPHAVSGGGVMMGARPEEVGGMRGAAAMPDGAPMPGNVASVA--QGMLESSSPQAQALALRVEHLVWGMEAMSAGLSMAQLDTLKAVLLDQVGRVDEAKLEQVRVQERSKSEEKTSILNQLQHFQ 886
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BLAST of mRNA_D-dudresnayi_contig10195.233.1 vs. uniprot
Match: A0A6H5K161_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K161_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.080e-25
Identity = 86/160 (53.75%), Postives = 93/160 (58.13%), Query Frame = 1 
Query:  859 PAHPMQMHPAMDVNGGPG---------------------------MMFSRPSQAAPQHMNGGMMXXXXXXXXVVAVSNVQAMLEASSAEAGALALRVEHLVWGVEAMRAGLSMGQLDTLKTLLLDQVSRVDEAKLEQVRVQERCKSEEKASILQQLHQFQ 1257
            P  PM MHPA ++NG  G                           MM +RP       M G  M         VA S  QAMLEASS +A ALALRVEHLVWG+EAM AGLSM QLDTLK +LLDQV+RVDEAKLEQVRVQER KSEEK  IL QL  FQ
Sbjct:  789 PPPPMHMHPAGNINGMVGDPSPATMMPXXXXXXXLAPHAVSGSGVMMGARPEGVG--GMRGAAMPDGTPMPGNVA-SVAQAMLEASSPQAQALALRVEHLVWGMEAMSAGLSMAQLDTLKAVLLDQVARVDEAKLEQVRVQERSKSEEKTCILNQLQHFQ 945
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10195.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLU4_ECTSI4.350e-2649.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K161_9PHAE1.080e-2553.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10195contigD-dudresnayi_contig10195:8537..11060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D8LLU4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1462
Cds size1461
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10195.233.1prot_D-dudresnayi_contig10195.233.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10195 8538..11060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927518.2255151-CDS-D-dudresnayi_contig10195:8537..88191622927518.2255151-CDS-D-dudresnayi_contig10195:8537..8819Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10195 8538..8819 -
1690556789.5977643-CDS-D-dudresnayi_contig10195:8537..88191690556789.5977643-CDS-D-dudresnayi_contig10195:8537..8819Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10195 8538..8819 -
1622927518.245519-CDS-D-dudresnayi_contig10195:9235..93701622927518.245519-CDS-D-dudresnayi_contig10195:9235..9370Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10195 9236..9370 -
1690556789.6092503-CDS-D-dudresnayi_contig10195:9235..93701690556789.6092503-CDS-D-dudresnayi_contig10195:9235..9370Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10195 9236..9370 -
1622927518.2566645-CDS-D-dudresnayi_contig10195:10016..110601622927518.2566645-CDS-D-dudresnayi_contig10195:10016..11060Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10195 10017..11060 -
1690556789.6180341-CDS-D-dudresnayi_contig10195:10016..110601690556789.6180341-CDS-D-dudresnayi_contig10195:10016..11060Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10195 10017..11060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10195.233.1

>prot_D-dudresnayi_contig10195.233.1 ID=prot_D-dudresnayi_contig10195.233.1|Name=mRNA_D-dudresnayi_contig10195.233.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=487bp
SWSVVSRTTRKKKAVPTPRRSSPPPPPPLSVPGQSAAHMRIRARGSASLP
RRGNGGRGVSSSAAPSWSRGARTTAATGHPTNVAAASGSPWAAPAADTSV
SAEAPTSTPAACHAAATLTTPCMPAAPQVESSATVGDGSVVTAPPPSTAV
PLEACTPSPSAIPQATGGVTSVSPESGGGDQESAAVTRRRQLNVNANAWT
PAPPTGFAPPLAQPPQVQPPLLPSRPLRMQMQMPMHGPPPVPFSGMPMGP
GNGLHPPLQQPPLPPLPPPAAWNHQPRYNNGFTGMRPAHPMQMHPAMDVN
GGPGMMFSRPSQAAPQHMNGGMMRGGGGGGGVVAVSNVQAMLEASSAEAG
ALALRVEHLVWGVEAMRAGLSMGQLDTLKTLLLDQVSRVDEAKLEQVRVQ
ERCKSEEKASILQQLHQFQADDSSVSTTIDSSDGDGGGDTNEAEAGVVVA
SSAGGSIGEEKEEEDEEEETCGGEEIKDRRKEGEEDV
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mRNA from alignment at D-dudresnayi_contig10195:8537..11060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10195.233.1 ID=mRNA_D-dudresnayi_contig10195.233.1|Name=mRNA_D-dudresnayi_contig10195.233.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2524bp|location=Sequence derived from alignment at D-dudresnayi_contig10195:8537..11060- (Desmarestia dudresnayi DdudBR16 monoicous)
TCTTGGTCGGTCGTCTCTCGGACGACGCGAAAAAAGAAAGCTGTGCCAAC
ACCTCGACGCTCGTCGCCGCCGCCGCCACCACCACTGTCGGTACCGGGAC
AATCCGCAGCGCATATGCGGATTCGCGCACGGGGTTCTGCATCGTTGCCC
AGGAGAGGGAATGGGGGTCGGGGGGTCAGCTCCTCTGCCGCACCAAGTTG
GTCGAGAGGAGCGAGAACAACCGCTGCGACCGGACACCCCACAAACGTAG
CTGCGGCGTCGGGATCACCGTGGGCGGCTCCTGCGGCCGACACATCTGTC
TCAGCGGAAGCTCCGACAAGTACGCCTGCCGCGTGTCATGCGGCCGCGAC
ATTGACGACGCCGTGCATGCCGGCGGCGCCGCAGGTTGAGTCTTCGGCCA
CTGTTGGCGACGGCTCTGTGGTGACAGCCCCGCCGCCGTCGACTGCTGTC
CCTCTGGAGGCATGTACGCCGTCTCCGTCCGCGATACCTCAGGCGACTGG
GGGGGTGACGAGCGTGTCTCCGGAGAGCGGCGGCGGAGACCAGGAAAGCG
CGGCGGTCACCCGGCGCCGCCAGCTGAACGTGAATGCTAACGCTTGGACG
CCGGCGCCCCCCACGGGATTCGCGCCGCCTCTGGCACAACCTCCTCAGGT
GCAACCGCCGTTGCTGCCATCCCGTCCGTTGCGCATGCAAATGCAGATGC
CCATGCACGGGCCCCCGCCGGTTCCATTCTCGGGCATGCCCATGGGACCA
GGAAATGGGCTTCACCCACCGTTGCAGCAGCCACCGCTGCCGCCGCTGCC
GCCGCCCGCGGCATGGAATCACCAGCCCCGCTACAACAATGGATTTACGG
GAATGCGCCCCGCACATCCCATGCAGATGCACCCGGCGATGGATGTTAAC
GGCGGTCCTGGAATGATGTTTTCAAGGCCTTCTCAAGCCGCGCCTCAGCA
TATGAACGGCGGTATGATGAGAGGAGGAGGTGGTGGTGGTGGCGTTGTTG
CCGTTTCTAATGTGCAGGCGATGCTTGAAGCTTCCTCAGCCGAGGTAAAA
ACAATTAGATAGGCGCGGCGCGTTTTTAGCGATCGGTCGTCCGCGCTGTC
CAGTACGCTTACGACGACTGCAATTAATTGCACGATAAAAAAAAAAAAAG
GGCTTTTCACAAGCTGAAAGAGAGACAGCATGATAAGATGTACTCTGCTA
ACGTTGCGAGTTCGGTTCACTGTTGTATGACAACGCGGGCATTCCTTTTT
GTTGTGTCGCCCGTGGTATAGTATATGTGTTTTATGAGAGCTCCGTTTAC
ACCGCTACCGACCGACCGGATATTTAGCGTGTTGGTTTTATTATAGTAAT
AATACCAACGTGGTCTGTTCAGCAGTTCGGAATAATTTTTAGTGTAGAGT
TAACCCTAACTCACACCTAACGACCACACCATAATAATAAAACGAGGAGT
AAGCACCTCCCTCAAGATCCAGTCGATTTTTATGTGAACGTACAGGTACA
TACTGCTTGTTTGTGAGCCCTCGCGCTTCTTCAAAAATTGGATTAAAAAA
TTGGATTAAGTATGAATGGCCAAGAAGGCGTAGTGTCCAGCGTCCGACCC
GGTCGCCCTTCACCCAGCCCTGCTGCGATTTCACGTGCTCGGTTTGCTTT
CTTTTTTTGTTTCTTTATTGTTGATTAAAACGATTTCCAGGCAGGGGCGC
TGGCGTTGCGCGTGGAGCACCTGGTCTGGGGCGTGGAAGCGATGCGGGCA
GGGCTTAGCATGGGCCAGCTGGACACGCTGAAGACCTTACTTTTGGATCA
AGTGTCCAGGGTGGATGAGGCTAAGGTTAGTGAGGGCTGTGCCCGGTACT
ACTACTACTACTACTACTACTACTGTGGCGCATGCAGGACGACTGCGGTT
GCCAAAATATGCCGACCCGAGATTATTCCATTCCACCCTTACCCAAGTGG
GATGGGTCGTCCTTGCAACGAAATGATGATACTCAGCCAGTGTCGCTATG
TATTCATATTCCTCGGCCTTCCGTAATTAATTAATTTGTTTGGCGCGTGG
GTCAGTTGTGTGTGGGTGAGGGGGAGCACAAGCTTTCCGGCGCAGAGTGG
CGCTTGCGAGCTGCAAAGTCCCCGTCCCGTCCCCCATGTCCCTCCTACGT
TCGCCCGCTCTTGAAGTTTATCATGCGTTGCCCCTACGCCTCGCTGTTGT
TTGTGCGTGGGTGCACTTGTGTTTTTGTGTCGCGGGGGTAGTTGGAGCAG
GTTCGTGTACAGGAACGCTGCAAAAGCGAGGAGAAGGCCAGTATTCTCCA
ACAGCTGCACCAGTTTCAAGCCGATGATTCATCGGTATCCACGACTATTG
ATAGTAGTGACGGCGACGGCGGCGGTGACACAAACGAAGCGGAAGCGGGA
GTAGTCGTCGCATCATCTGCTGGGGGCAGCATTGGCGAGGAAAAAGAAGA
GGAGGACGAGGAAGAAGAGACGTGTGGGGGCGAGGAGATAAAAGACAGGA
GGAAGGAGGGAGAAGAGGATGTGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10195:8537..11060-

>mRNA_D-dudresnayi_contig10195.233.1 ID=mRNA_D-dudresnayi_contig10195.233.1|Name=mRNA_D-dudresnayi_contig10195.233.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2922bp|location=Sequence derived from alignment at D-dudresnayi_contig10195:8537..11060- (Desmarestia dudresnayi DdudBR16 monoicous)
TCTTGGTCGGTCGTCTCTCGGACGACGCGAAAAAAGAAAGCTGTGCCAAC
ACCTCGACGCTCGTCGCCGCCGCCGCCACCACCACTGTCGGTACCGGGAC
AATCCGCAGCGCATATGCGGATTCGCGCACGGGGTTCTGCATCGTTGCCC
AGGAGAGGGAATGGGGGTCGGGGGGTCAGCTCCTCTGCCGCACCAAGTTG
GTCGAGAGGAGCGAGAACAACCGCTGCGACCGGACACCCCACAAACGTAG
CTGCGGCGTCGGGATCACCGTGGGCGGCTCCTGCGGCCGACACATCTGTC
TCAGCGGAAGCTCCGACAAGTACGCCTGCCGCGTGTCATGCGGCCGCGAC
ATTGACGACGCCGTGCATGCCGGCGGCGCCGCAGGTTGAGTCTTCGGCCA
CTGTTGGCGACGGCTCTGTGGTGACAGCCCCGCCGCCGTCGACTGCTGTC
CCTCTGGAGGCATGTACGCCGTCTCCGTCCGCGATACCTCAGGCGACTGG
GGGGGTGACGAGCGTGTCTCCGGAGAGCGGCGGCGGAGACCAGGAAAGCG
CGGCGGTCACCCGGCGCCGCCAGCTGAACGTGAATGCTAACGCTTGGACG
CCGGCGCCCCCCACGGGATTCGCGCCGCCTCTGGCACAACCTCCTCAGGT
GCAACCGCCGTTGCTGCCATCCCGTCCGTTGCGCATGCAAATGCAGATGC
CCATGCACGGGCCCCCGCCGGTTCCATTCTCGGGCATGCCCATGGGACCA
GGAAATGGGCTTCACCCACCGTTGCAGCAGCCACCGCTGCCGCCGCTGCC
GCCGCCCGCGGCATGGAATCACCAGCCCCGCTACAACAATGGATTTACGG
GAATGCGCCCCGCACATCCCATGCAGATGCACCCGGCGATGGATGTTAAC
GGCGGTCCTGGAATGATGTTTTCAAGGCCTTCTCAAGCCGCGCCTCAGCA
TATGAACGGCGGTATGATGAGAGGAGGAGGTGGTGGTGGTGGCGTTGTTG
CCGTTTCTAATGTGCAGGCGATGCTTGAAGCTTCCTCAGCCGAGTCTTGG
TCGGTCGTCTCTCGGACGACGCGAAAAAAGAAAGCTGTGCCAACACCTCG
ACGCTCGTCGCCGCCGCCGCCACCACCACTGTCGGTACCGGGACAATCCG
CAGCGCATATGCGGATTCGCGCACGGGGTTCTGCATCGTTGCCCAGGAGA
GGGAATGGGGGTCGGGGGGTCAGCTCCTCTGCCGCACCAAGTTGGTCGAG
AGGAGCGAGAACAACCGCTGCGACCGGACACCCCACAAACGTAGCTGCGG
CGTCGGGATCACCGTGGGCGGCTCCTGCGGCCGACACATCTGTCTCAGCG
GAAGCTCCGACAAGTACGCCTGCCGCGTGTCATGCGGCCGCGACATTGAC
GACGCCGTGCATGCCGGCGGCGCCGCAGGTTGAGTCTTCGGCCACTGTTG
GCGACGGCTCTGTGGTGACAGCCCCGCCGCCGTCGACTGCTGTCCCTCTG
GAGGCATGTACGCCGTCTCCGTCCGCGATACCTCAGGCGACTGGGGGGGT
GACGAGCGTGTCTCCGGAGAGCGGCGGCGGAGACCAGGAAAGCGCGGCGG
TCACCCGGCGCCGCCAGCTGAACGTGAATGCTAACGCTTGGACGCCGGCG
CCCCCCACGGGATTCGCGCCGCCTCTGGCACAACCTCCTCAGGTGCAACC
GCCGTTGCTGCCATCCCGTCCGTTGCGCATGCAAATGCAGATGCCCATGC
ACGGGCCCCCGCCGGTTCCATTCTCGGGCATGCCCATGGGACCAGGAAAT
GGGCTTCACCCACCGTTGCAGCAGCCACCGCTGCCGCCGCTGCCGCCGCC
CGCGGCATGGAATCACCAGCCCCGCTACAACAATGGATTTACGGGAATGC
GCCCCGCACATCCCATGCAGATGCACCCGGCGATGGATGTTAACGGCGGT
CCTGGAATGATGTTTTCAAGGCCTTCTCAAGCCGCGCCTCAGCATATGAA
CGGCGGTATGATGAGAGGAGGAGGTGGTGGTGGTGGCGTTGTTGCCGTTT
CTAATGTGCAGGCGATGCTTGAAGCTTCCTCAGCCGAGGCAGGGGCGCTG
GCGTTGCGCGTGGAGCACCTGGTCTGGGGCGTGGAAGCGATGCGGGCAGG
GCTTAGCATGGGCCAGCTGGACACGCTGAAGACCTTACTTTTGGATCAAG
TGTCCAGGGTGGATGAGGCTAAGGCAGGGGCGCTGGCGTTGCGCGTGGAG
CACCTGGTCTGGGGCGTGGAAGCGATGCGGGCAGGGCTTAGCATGGGCCA
GCTGGACACGCTGAAGACCTTACTTTTGGATCAAGTGTCCAGGGTGGATG
AGGCTAAGTTGGAGCAGGTTCGTGTACAGGAACGCTGCAAAAGCGAGGAG
AAGGCCAGTATTCTCCAACAGCTGCACCAGTTTCAAGCCGATGATTCATC
GGTATCCACGACTATTGATAGTAGTGACGGCGACGGCGGCGGTGACACAA
ACGAAGCGGAAGCGGGAGTAGTCGTCGCATCATCTGCTGGGGGCAGCATT
GGCGAGGAAAAAGAAGAGGAGGACGAGGAAGAAGAGACGTGTGGGGGCGA
GGAGATAAAAGACAGGAGGAAGGAGGGAGAAGAGGATGTGTTGGAGCAGG
TTCGTGTACAGGAACGCTGCAAAAGCGAGGAGAAGGCCAGTATTCTCCAA
CAGCTGCACCAGTTTCAAGCCGATGATTCATCGGTATCCACGACTATTGA
TAGTAGTGACGGCGACGGCGGCGGTGACACAAACGAAGCGGAAGCGGGAG
TAGTCGTCGCATCATCTGCTGGGGGCAGCATTGGCGAGGAAAAAGAAGAG
GAGGACGAGGAAGAAGAGACGTGTGGGGGCGAGGAGATAAAAGACAGGAG
GAAGGAGGGAGAAGAGGATGTG
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