mRNA_D-dudresnayi_contig10194.231.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10194.231.1
Unique NamemRNA_D-dudresnayi_contig10194.231.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10194.231.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.220e-28
Identity = 70/119 (58.82%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:    1 QAWNHLGAAAELAGRGTQAIASYRRALSLLEEQGERF-----GEGGEGNTDEGACARWEEAVRLARCNVGRALVLKGQATEAVGFFNDSDLGQAENVLLLGRAHVLRSDWDAAHAALQQ 342
            QAWN+LGAA+ELAGRGTQA+A+YRRAL LLEEQ ERF      EGGE          WE AV L + NVGRALVL G A EAV    +++L QA+N L LGRAH L  +WD A AAL++
Sbjct:  611 QAWNYLGAASELAGRGTQAVAAYRRALGLLEEQRERFKATVGAEGGE---------VWEGAVALTKGNVGRALVLVGAAEEAVACLGEAELAQADNALQLGRAHALLGNWDTALAALEE 720
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BLAST of mRNA_D-dudresnayi_contig10194.231.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 6.960e-27
Identity = 84/174 (48.28%), Postives = 94/174 (54.02%), Query Frame = 1 
Query:    1 QAWNHLGAAAELAGRGTQAIASYRRALSLLEEQGERFGEGGEGNTDEGACAR--WEEAVRLARCNVGRALVLKGQATEAVGFFNDSDLGQAENVLLLGRAHVLRSDWDAAHAALQQALLQDNETVGALISSAALMYHRGDKSSAVEAGTTLMARYSTHRRVLLTAVSLGALTAD 516
            QAWN+LGAA+ELAGRGTQA+A+YRRAL LLEEQ ERF          GA  R  W EAV LA+ NVGRALVL G   EAV    ++D  QA+N L L                              LIS AA+ Y RGD S A  A  T MA+    RRVL T VSL AL  D
Sbjct: 1128 QAWNYLGAASELAGRGTQAVAAYRRALGLLEEQRERF------KATAGAEGRKVWGEAVALAKGNVGRALVLVGGVEEAVACLGEADPAQADNALQLXXXXXXXXXXXXXXXXXXXXXXXXXXX---LISGAAVRYLRGDASGAAAAAGTFMAQRPGDRRVLHTVVSLAALAGD 1292
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10194.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG00_9PHAE1.220e-2858.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI6.960e-2748.28Similar to Tetratricopeptide repeat protein 37 (TP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10194contigD-dudresnayi_contig10194:7900..9582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons3
Model size524
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10194.231.1prot_D-dudresnayi_contig10194.231.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10194 7902..9582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927518.1535566-CDS-D-dudresnayi_contig10194:7901..80811622927518.1535566-CDS-D-dudresnayi_contig10194:7901..8081Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10194 7902..8081 -
1690556789.5626268-CDS-D-dudresnayi_contig10194:7901..80811690556789.5626268-CDS-D-dudresnayi_contig10194:7901..8081Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10194 7902..8081 -
1622927518.1659143-CDS-D-dudresnayi_contig10194:8713..87911622927518.1659143-CDS-D-dudresnayi_contig10194:8713..8791Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10194 8714..8791 -
1690556789.5754516-CDS-D-dudresnayi_contig10194:8713..87911690556789.5754516-CDS-D-dudresnayi_contig10194:8713..8791Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10194 8714..8791 -
1622927518.1817896-CDS-D-dudresnayi_contig10194:9318..95821622927518.1817896-CDS-D-dudresnayi_contig10194:9318..9582Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10194 9319..9582 -
1690556789.5855818-CDS-D-dudresnayi_contig10194:9318..95821690556789.5855818-CDS-D-dudresnayi_contig10194:9318..9582Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10194 9319..9582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10194.231.1

>prot_D-dudresnayi_contig10194.231.1 ID=prot_D-dudresnayi_contig10194.231.1|Name=mRNA_D-dudresnayi_contig10194.231.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=174bp
QAWNHLGAAAELAGRGTQAIASYRRALSLLEEQGERFGEGGEGNTDEGAC
ARWEEAVRLARCNVGRALVLKGQATEAVGFFNDSDLGQAENVLLLGRAHV
LRSDWDAAHAALQQALLQDNETVGALISSAALMYHRGDKSSAVEAGTTLM
ARYSTHRRVLLTAVSLGALTADTD
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mRNA from alignment at D-dudresnayi_contig10194:7900..9582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10194.231.1 ID=mRNA_D-dudresnayi_contig10194.231.1|Name=mRNA_D-dudresnayi_contig10194.231.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1683bp|location=Sequence derived from alignment at D-dudresnayi_contig10194:7900..9582- (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGCGTGGAATCACCTTGGCGCAGCGGCAGAGCTCGCAGGAAGGGGGAC
TCAAGCCATTGCCTCGTATCGCCGTGCGTTGAGCCTTCTAGAGGAGCAAG
GAGAACGATTTGGGGAAGGGGGTGAAGGTAACACCGATGAAGGGGCGTGT
GCTAGATGGGAGGAAGCGGTCCGGCTCGCTAGGTGTAACGTCGGGCGTGC
ACTGGTGTTGAAGGGGCAGGCGACGGAGGCCGTGGGATTCTTCAACGACA
GCGACCTTGGTCAGGTGGAGACAAGACATGCATGAGTTTTTTGTTTCTAA
AAATAAAGTGACGAAGGACAACGCCAGTGACCCTGATAATGCCCGTTTCA
GGATGTCGAGTGAAACATCCCGGAGTTTTGTTGCCTGTGAAGCTCGCGGG
CGTGTGTCAACAATTGACCTTGCGCATGACGTAGCAAGTGCTTTTCTTGC
TGGTTGCGGTATATGATGGTCAGCTGGGAAATATACGGCAACATAGTTAC
ATCCTGCCTTGGATTGATTGATTGATTGATTGCCTGCATTCAGTGTGGGG
ACGCGCAGGAGAATATCCACAGGGACTTGTTTCGGCGCCTCCGTCTGTTG
TGTGTCCAGAGCGATGGAGTTATGTGTGGAGCACGATATCATGTACAGAT
CATGGATTGGTTATGGGAACAGGGCGATGTGACGAGTAGACGCGCGGGGG
TGTCCTCCCCGTGCCGTGTTTCTGTCGTGTTTTTAATGCAGTGGTCACGG
ATAACGACATACTTCTTATTTCGTGCCCCCGGACTGTGCAGGCGGAAAAT
GTGCTTCTACTGGGGCGTGCACATGTTCTGCGCAGTGATTGGGATGCTGC
CCATGCCGCACTTCAACAGGTACGGCCAAATTATGTACGTATCGATAGTG
CGTCGTCGTGTGACCATGTTACCCCGATGATGATACATTTTATTTTGCTA
TGTTAGCAGATGGCTTTGTCGTGAACGCTACGGAACGTTGTGCATTGAAG
CATGCCAAGATTTATGTGACGCAGTCTCGGCATTCTTATTGCCTGGAGGT
GTATACCATGACTTTCAGGTGTGTACCTCCGTAATTTCCATCAAACAAGA
AAAACGGCCAAGAACGTCTATGCTGGGAATCGAACTCCGGGTTGTGCTTT
TGTTAGTTCAACACGATGGTCTAACCACTGAGCTGTTCAGTTAATCAGCG
CTGACTGAATAGCGTCGTGGTTACGTGTGTTTCTAACACAGATTCTGGCA
AAAATTTATGTTAACACCGTTAATCAAGCTGAAGGCAGGCTGGTGTATAT
ATTCCCTGCTCTGTCAGCCCCCGGCAACGCATATCCTGCACCAGGATTTA
GGGAAGGGTCAACGCGGGAAAGACCTGCGGTCGCGTGGTTTATCGTTGTA
GCGCACGGTGTTTGCAGCACGCATCTACGGCACACGTATTTCTCCATTGT
CGACCACGTTCCCTTCATGAACGCGGTAACACCCCCTCCCCTCTCACCTA
GGCCCTGCTACAAGATAATGAAACGGTGGGAGCCCTTATTTCTTCTGCGG
CGCTGATGTATCACCGGGGAGACAAGAGCAGCGCAGTCGAGGCTGGTACT
ACCCTCATGGCCCGCTACTCGACGCATCGCCGCGTACTCCTGACAGCCGT
GTCTTTGGGGGCGCTTACGGCCGACACCGACAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10194:7900..9582-

>mRNA_D-dudresnayi_contig10194.231.1 ID=mRNA_D-dudresnayi_contig10194.231.1|Name=mRNA_D-dudresnayi_contig10194.231.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at D-dudresnayi_contig10194:7900..9582- (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGCGTGGAATCACCTTGGCGCAGCGGCAGAGCTCGCAGGAAGGGGGAC
TCAAGCCATTGCCTCGTATCGCCGTGCGTTGAGCCTTCTAGAGGAGCAAG
GAGAACGATTTGGGGAAGGGGGTGAAGGTAACACCGATGAAGGGGCGTGT
GCTAGATGGGAGGAAGCGGTCCGGCTCGCTAGGTGTAACGTCGGGCGTGC
ACTGGTGTTGAAGGGGCAGGCGACGGAGGCCGTGGGATTCTTCAACGACA
GCGACCTTGGTCAGCAGGCGTGGAATCACCTTGGCGCAGCGGCAGAGCTC
GCAGGAAGGGGGACTCAAGCCATTGCCTCGTATCGCCGTGCGTTGAGCCT
TCTAGAGGAGCAAGGAGAACGATTTGGGGAAGGGGGTGAAGGTAACACCG
ATGAAGGGGCGTGTGCTAGATGGGAGGAAGCGGTCCGGCTCGCTAGGTGT
AACGTCGGGCGTGCACTGGTGTTGAAGGGGCAGGCGACGGAGGCCGTGGG
ATTCTTCAACGACAGCGACCTTGGTCAGGCGGAAAATGTGCTTCTACTGG
GGCGTGCACATGTTCTGCGCAGTGATTGGGATGCTGCCCATGCCGCACTT
CAACAGGCGGAAAATGTGCTTCTACTGGGGCGTGCACATGTTCTGCGCAG
TGATTGGGATGCTGCCCATGCCGCACTTCAACAGGCCCTGCTACAAGATA
ATGAAACGGTGGGAGCCCTTATTTCTTCTGCGGCGCTGATGTATCACCGG
GGAGACAAGAGCAGCGCAGTCGAGGCTGGTACTACCCTCATGGCCCGCTA
CTCGACGCATCGCCGCGTACTCCTGACAGCCGTGTCTTTGGGGGCGCTTA
CGGCCGACACCGACGCCCTGCTACAAGATAATGAAACGGTGGGAGCCCTT
ATTTCTTCTGCGGCGCTGATGTATCACCGGGGAGACAAGAGCAGCGCAGT
CGAGGCTGGTACTACCCTCATGGCCCGCTACTCGACGCATCGCCGCGTAC
TCCTGACAGCCGTGTCTTTGGGGGCGCTTACGGCCGACACCGAC
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