mRNA_D-dudresnayi_contig10194.230.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10194.230.1
Unique NamemRNA_D-dudresnayi_contig10194.230.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10194.230.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.920e-29
Identity = 111/274 (40.51%), Postives = 149/274 (54.38%), Query Frame = 2 
Query:    8 WHCLGAALVGQALSSPLESEPAQQA-LGDALVIYRGVSDAKCEV--ERQDGADD-MAALEAMYIGALRCDGQHAAEIFNGASELSRSSAFGSEGASTSFVGSVSAARAALCGGAP------DVVDKYKEVVRMEPRALLGWLELAACYSLVGQYHASMFALECGTSNAGWSG---------QKSATA-AAPLQVQTAATQLLTGHAEE--GLASVSRAFRCGKGGAVGHVLRALISLRLGKESLAMQAFGKAKEA--DPGITAFVDALSTTQVG 757
            W  L  A+VG+ALS   +S   +   L DA  ++RG+   K +    R DG+ D +   EA Y+  L   GQ   +  +G+S           G + SF  ++ AAR A  GG        D + +YK  +R EPRAL+GW ELA CY L  Q++A+  ALECG   AG +G         ++S +A AAPL +Q AA  L+    EE  GLA+V  AFR GKGGAVGHVLR L+   LGK+SLA  +F KA+EA  DP + A  D +S  + G
Sbjct: 1050 WRYLARAMVGEALSWVYKSPGTRDVMLRDAHSLFRGIPKPKSDSGPTRGDGSQDSLLRAEADYLQLLL--GQK--KTHDGSST----------GKTKSFPAALMAARLAAHGGVDGHGGHEDAIKRYKLALREEPRALVGWRELAVCYQLSNQHNAATAALECGAQAAGPAGSGDCASSGKRRSVSATAAPLYLQLAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLYSGLGKDSLAAGSFSKAREAGLDPAVAALADKVSVPRAG 1309
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BLAST of mRNA_D-dudresnayi_contig10194.230.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 7.660e-26
Identity = 88/184 (47.83%), Postives = 113/184 (61.41%), Query Frame = 2 
Query:  272 EGAST-SFVGSVSAARAALCGGAP------DVVDKYKEVVRMEPRALLGWLELAACYSLVGQYHASMFALECGTSNAG--------WSGQK---SATAAAPLQVQTAATQLLTGHAEE--GLASVSRAFRCGKGGAVGHVLRALISLRLGKESLAMQAFGKAKEA--DPGITAFVDALSTTQVG 757
            +G+ST SF  ++ AAR A  GG        D + +YK  +R +PRAL+GW ELAACY L  Q+HA+  ALECG   AG         SG++   SATAA PL +Q AA  L+    EE  GLA+V  AFR GKGGAVGHVLR L++  LGK+SLA  +F KA++A  DP + A  D +S  + G
Sbjct: 1519 DGSSTDSFPAALMAARVAARGGVDGDGGREDAIKRYKLALREQPRALVGWRELAACYELSNQHHAAAAALECGAQAAGPADSVDSSSSGKRRSVSATAA-PLYLQMAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLNSGLGKDSLAAGSFAKARDAGLDPAVAALADKVSVPRAG 1701
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10194.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG00_9PHAE1.920e-2940.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI7.660e-2647.83Similar to Tetratricopeptide repeat protein 37 (TP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10194contigD-dudresnayi_contig10194:4417..6410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue1.7e-26
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size1473
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10194.230.1prot_D-dudresnayi_contig10194.230.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10194 5073..5729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927518.0903604-UTR-D-dudresnayi_contig10194:4416..50721622927518.0903604-UTR-D-dudresnayi_contig10194:4416..5072Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10194 4417..5072 -
1690556789.5087216-UTR-D-dudresnayi_contig10194:4416..50721690556789.5087216-UTR-D-dudresnayi_contig10194:4416..5072Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10194 4417..5072 -
1622927518.1107943-UTR-D-dudresnayi_contig10194:5729..58581622927518.1107943-UTR-D-dudresnayi_contig10194:5729..5858Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10194 5730..5858 -
1690556789.543446-UTR-D-dudresnayi_contig10194:5729..58581690556789.543446-UTR-D-dudresnayi_contig10194:5729..5858Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10194 5730..5858 -
1622927518.1201172-UTR-D-dudresnayi_contig10194:6379..64101622927518.1201172-UTR-D-dudresnayi_contig10194:6379..6410Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10194 6380..6410 -
1690556789.5527678-UTR-D-dudresnayi_contig10194:6379..64101690556789.5527678-UTR-D-dudresnayi_contig10194:6379..6410Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10194 6380..6410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927518.1017098-CDS-D-dudresnayi_contig10194:5072..57291622927518.1017098-CDS-D-dudresnayi_contig10194:5072..5729Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10194 5073..5729 -
1690556789.53242-CDS-D-dudresnayi_contig10194:5072..57291690556789.53242-CDS-D-dudresnayi_contig10194:5072..5729Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10194 5073..5729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10194.230.1

>prot_D-dudresnayi_contig10194.230.1 ID=prot_D-dudresnayi_contig10194.230.1|Name=mRNA_D-dudresnayi_contig10194.230.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=219bp
MAALEAMYIGALRCDGQHAAEIFNGASELSRSSAFGSEGASTSFVGSVSA
ARAALCGGAPDVVDKYKEVVRMEPRALLGWLELAACYSLVGQYHASMFAL
ECGTSNAGWSGQKSATAAAPLQVQTAATQLLTGHAEEGLASVSRAFRCGK
GGAVGHVLRALISLRLGKESLAMQAFGKAKEADPGITAFVDALSTTQVGI
VEHDLIPTCDAHGREGHN*
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mRNA from alignment at D-dudresnayi_contig10194:4417..6410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10194.230.1 ID=mRNA_D-dudresnayi_contig10194.230.1|Name=mRNA_D-dudresnayi_contig10194.230.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1994bp|location=Sequence derived from alignment at D-dudresnayi_contig10194:4417..6410- (Desmarestia dudresnayi DdudBR16 monoicous)
CGCGGCATGGCACTGCCTCGGAGCGGCTTTGGTATGTGGCATAGCTTGCA
GAGTAGACAACTATCGCCACTACTGTCGTAGTTGTTGTTGTTGCTTTCGG
TCCTTGCATTGTTGAAACATCAGTTTTATGATACGGGCACTCGCGGGATA
TAGCGAAGGGGCTAGTACCACTCTGTTACGTGTGCTTCTCAACTCTGATT
TCCCCCCCGTAAACTGGGCACACGCTGTATACACCGGCTGTCGTTTTTGG
CTTGCCGCATGGTTGGCTTGCCGCATGGTGTACATATTACTTACTGATTA
ACTGCCGGGACACGTGGTGGATATGGGAGAACCCTATATATTCACCGAAG
ATGTCGGTGAACTGAAGGTAGGCGCAAGTGTAAACCAGGCGTGACAATGA
TGGTGCGGCGTACGGTACATTGAGGACTCCATGCGTGAGTGAGTGCGACT
CATCGAGTAGGCGTGTTCCTAGTCTCCTGTATTCGTAGTATCTTGGCCTC
GCTAACTCAGGCGTTTACCTCTTGCCCCCCTACCTCCAACCTCGGTCCCC
AGGTTGGCCAAGCTCTTTCCTCGCCGCTTGAGAGTGAACCTGCGCAACAA
GCCCTCGGCGACGCCCTCGTTATTTATCGGGGAGTTTCCGACGCCAAGTG
TGAAGTAGAGCGTCAGGATGGTGCAGACGACATGGCCGCATTAGAGGCAA
TGTATATTGGTGCCTTACGTTGCGACGGGCAACACGCCGCTGAAATTTTC
AACGGTGCTTCGGAGCTATCGCGTAGTAGTGCTTTTGGCAGTGAAGGAGC
GTCTACTTCTTTTGTGGGCAGCGTGTCGGCGGCTAGAGCAGCGCTCTGTG
GCGGAGCCCCAGACGTGGTCGACAAGTACAAAGAGGTTGTCAGGATGGAA
CCCAGGGCACTTCTGGGGTGGCTAGAGCTTGCGGCGTGTTACAGCCTTGT
TGGTCAGTACCATGCGTCTATGTTTGCGTTGGAGTGTGGGACGAGCAACG
CTGGCTGGAGTGGCCAGAAAAGCGCGACGGCTGCGGCACCGCTGCAGGTA
CAGACAGCAGCGACACAGCTGTTAACAGGGCACGCGGAGGAGGGCCTTGC
GTCCGTAAGTCGGGCCTTTCGATGTGGAAAAGGAGGAGCCGTCGGGCACG
TGTTGCGGGCTCTGATAAGCCTGCGTTTGGGGAAGGAAAGCCTGGCAATG
CAGGCATTTGGGAAGGCGAAGGAAGCAGATCCTGGGATTACCGCGTTTGT
AGATGCACTTTCCACGACACAGGTGGGTATTGTTGAGCACGATTTAATAC
CCACCTGTGATGCACACGGTCGTGAGGGACATAACTAGCCGCGTAGATTT
TAGAAACGTCTTGCAGGATAGCCGTGTTGTTTTTTTCGAATTATTGGCGA
TCTCCACTATTTTGGTGGATTGTATTTGGAGGGATGGTTGCTGGTAAAAC
TCTTATGATGGCTAGAGATGTTTCTGTTGCAGCAGAGGGTGTGAGATACC
AGATGCAAAACTCCATTGGCGGCATGGTTAACCTACAACAGTATGATGGT
CTCTAAAGAACGCCTACATAAGAGTATCTTGCAAGCCCGATAATGCAGTG
CATAGGCCCATTAATTCTGTAGTGAACGTCTTATCACACGTGTCTTCCCC
TCCAGCGAAACTTAGTGTGGCTGGCGTGAGGGCTAACCTTGTGATTGACC
CAAGACTAAAGCGGTAATCAGGGACAAACCACGGCAAAAAGGACGCGTCG
GTATAGCGTGTGTACTGTCTAGGACTGCGACGCGATCGATGGGAGCGGAG
CCCTGCCCGGATGGGATTTCAATTGTTGGTGTTCTTTGCGAAGGGAAGAC
ATCGAAACGTATTACCATACCATAAATGGGCCAAACGCCTTGTGGGTTAC
ACAAGTGCCGGCTTGTACTCATCTCGGCAGTCTCTGCAGCATTCTGTTGA
TTTATTTGAAGCCTACCCCCCCCCCCCCCTGAGTTATGGAGGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10194:4417..6410-

>mRNA_D-dudresnayi_contig10194.230.1 ID=mRNA_D-dudresnayi_contig10194.230.1|Name=mRNA_D-dudresnayi_contig10194.230.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at D-dudresnayi_contig10194:4417..6410- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCCGCATTAGAGGCAATGTATATTGGTGCCTTACGTTGCGACGGGCA
ACACGCCGCTGAAATTTTCAACGGTGCTTCGGAGCTATCGCGTAGTAGTG
CTTTTGGCAGTGAAGGAGCGTCTACTTCTTTTGTGGGCAGCGTGTCGGCG
GCTAGAGCAGCGCTCTGTGGCGGAGCCCCAGACGTGGTCGACAAGTACAA
AGAGGTTGTCAGGATGGAACCCAGGGCACTTCTGGGGTGGCTAGAGCTTG
CGGCGTGTTACAGCCTTGTTGGTCAGTACCATGCGTCTATGTTTGCGTTG
GAGTGTGGGACGAGCAACGCTGGCTGGAGTGGCCAGAAAAGCGCGACGGC
TGCGGCACCGCTGCAGGTACAGACAGCAGCGACACAGCTGTTAACAGGGC
ACGCGGAGGAGGGCCTTGCGTCCGTAAGTCGGGCCTTTCGATGTGGAAAA
GGAGGAGCCGTCGGGCACGTGTTGCGGGCTCTGATAAGCCTGCGTTTGGG
GAAGGAAAGCCTGGCAATGCAGGCATTTGGGAAGGCGAAGGAAGCAGATC
CTGGGATTACCGCGTTTGTAGATGCACTTTCCACGACACAGGTGGGTATT
GTTGAGCACGATTTAATACCCACCTGTGATGCACACGGTCGTGAGGGACA
TAACTAGATGGCCGCATTAGAGGCAATGTATATTGGTGCCTTACGTTGCG
ACGGGCAACACGCCGCTGAAATTTTCAACGGTGCTTCGGAGCTATCGCGT
AGTAGTGCTTTTGGCAGTGAAGGAGCGTCTACTTCTTTTGTGGGCAGCGT
GTCGGCGGCTAGAGCAGCGCTCTGTGGCGGAGCCCCAGACGTGGTCGACA
AGTACAAAGAGGTTGTCAGGATGGAACCCAGGGCACTTCTGGGGTGGCTA
GAGCTTGCGGCGTGTTACAGCCTTGTTGGTCAGTACCATGCGTCTATGTT
TGCGTTGGAGTGTGGGACGAGCAACGCTGGCTGGAGTGGCCAGAAAAGCG
CGACGGCTGCGGCACCGCTGCAGGTACAGACAGCAGCGACACAGCTGTTA
ACAGGGCACGCGGAGGAGGGCCTTGCGTCCGTAAGTCGGGCCTTTCGATG
TGGAAAAGGAGGAGCCGTCGGGCACGTGTTGCGGGCTCTGATAAGCCTGC
GTTTGGGGAAGGAAAGCCTGGCAATGCAGGCATTTGGGAAGGCGAAGGAA
GCAGATCCTGGGATTACCGCGTTTGTAGATGCACTTTCCACGACACAGGT
GGGTATTGTTGAGCACGATTTAATACCCACCTGTGATGCACACGGTCGTG
AGGGACATAACTAG
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