mRNA_D-dudresnayi_contig10187.225.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10187.225.1
Unique NamemRNA_D-dudresnayi_contig10187.225.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10187.225.1 vs. uniprot
Match: D8LFL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL5_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 2.680e-91
Identity = 146/189 (77.25%), Postives = 161/189 (85.19%), Query Frame = 1
Query:    1 AGIGGGAYLDGSNATLRDCRFEANSAEGSDLFGQLASFGGGLATRGPTYLTTIRQVHDCLFVGNAAGRGGSGGGIWVEDGTTAVLSNTSVVGNTAASSYTHKGAGGGVAVSASASLDMSQGCLLEGNVAGPEDVGASDPACLSGEGGAIYSSGSGLTLQGVILRRNRCETGALDAGCSGGAVSVTGQGP 567
            AGIGGGAYLD S+AT+  CRFE N AEG DLFGQLASFG GLATRGPT+   +  + D  FV NAAG+GGSGGGIWVEDG  AVL+ T  V NTAASSYTHKGAGGGVAVSASASL MS+GC+LEGNVAGPEDVGASDP+CLSG+GG I+ SGS +TL GV LRRNRCETGALDAGCSGGAVS+TG+GP
Sbjct:    6 AGIGGGAYLDDSDATVSGCRFENNVAEGIDLFGQLASFGAGLATRGPTH---VLDMSDSSFVANAAGKGGSGGGIWVEDGAKAVLARTKFVNNTAASSYTHKGAGGGVAVSASASLTMSEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGP 191          
BLAST of mRNA_D-dudresnayi_contig10187.225.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.480e-82
Identity = 145/189 (76.72%), Postives = 159/189 (84.13%), Query Frame = 1
Query:    1 AGIGGGAYLDGSNATLRDCRFEANSAEGSDLFGQLASFGGGLATRGPTYLTTIRQVHDCLFVGNAAGRGGSGGGIWVEDGTTAVLSNTSVVGNTAASSYTHKGAGGGVAVSASASLDMSQGCLLEGNVAGPEDVGASDPACLSGEGGAIYSSGSGLTLQGVILRRNRCETGALDAGCSGGAVSVTGQGP 567
            AGIGGGAYLD S+AT+  CRFE N AEG DLFGQLASFG GLAT GPT    +  + D  FV NAAG+GGSGGGIWVEDG  AVL+ T  V NTAASSYTHKGAGGGVAVSASASL MS+GC+LEGNVAGPEDVGASDP+CLSG+GG I+ SGS +TL GV LRRNRCETGALDAGCSGGAVS+TG+GP
Sbjct:  401 AGIGGGAYLDDSDATVSGCRFENNVAEGIDLFGQLASFGAGLATGGPTQ---VLDMSDSSFVANAAGKGGSGGGIWVEDGAKAVLARTKFVNNTAASSYTHKGAGGGVAVSASASLTMSEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGP 586          
BLAST of mRNA_D-dudresnayi_contig10187.225.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.700e-29
Identity = 57/72 (79.17%), Postives = 67/72 (93.06%), Query Frame = 1
Query:  352 MSQGCLLEGNVAGPEDVGASDPACLSGEGGAIYSSGSGLTLQGVILRRNRCETGALDAGCSGGAVSVTGQGP 567
            MS+GC+LEGNVAGPEDVGASDP+CLSG+GG I+ SGS ++L GV +RRNRCETGALDAGCSGGAVS+TG+GP
Sbjct:    1 MSEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAISLSGVSMRRNRCETGALDAGCSGGAVSLTGRGP 72          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10187.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFL5_ECTSI2.680e-9177.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTH4_ECTSI1.480e-8276.72Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K5Q8_9PHAE1.700e-2979.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10187contigD-dudresnayi_contig10187:347..3342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.5
Seed ortholog evalue2.3e-72
Seed eggNOG ortholog2880.D7FTH4
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-04_001770.1
Exons3
Model size567
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10187.225.1prot_D-dudresnayi_contig10187.225.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10187 347..3342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.6468344-CDS-D-dudresnayi_contig10187:346..5161622927517.6468344-CDS-D-dudresnayi_contig10187:346..516Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10187 347..516 +
1690556789.218879-CDS-D-dudresnayi_contig10187:346..5161690556789.218879-CDS-D-dudresnayi_contig10187:346..516Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10187 347..516 +
1622927517.6570923-CDS-D-dudresnayi_contig10187:2271..24971622927517.6570923-CDS-D-dudresnayi_contig10187:2271..2497Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10187 2272..2497 +
1690556789.2298124-CDS-D-dudresnayi_contig10187:2271..24971690556789.2298124-CDS-D-dudresnayi_contig10187:2271..2497Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10187 2272..2497 +
1622927517.6682646-CDS-D-dudresnayi_contig10187:3171..33421622927517.6682646-CDS-D-dudresnayi_contig10187:3171..3342Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10187 3172..3342 +
1690556789.2401638-CDS-D-dudresnayi_contig10187:3171..33421690556789.2401638-CDS-D-dudresnayi_contig10187:3171..3342Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10187 3172..3342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10187.225.1

>prot_D-dudresnayi_contig10187.225.1 ID=prot_D-dudresnayi_contig10187.225.1|Name=mRNA_D-dudresnayi_contig10187.225.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=189bp
AGIGGGAYLDGSNATLRDCRFEANSAEGSDLFGQLASFGGGLATRGPTYL
TTIRQVHDCLFVGNAAGRGGSGGGIWVEDGTTAVLSNTSVVGNTAASSYT
HKGAGGGVAVSASASLDMSQGCLLEGNVAGPEDVGASDPACLSGEGGAIY
SSGSGLTLQGVILRRNRCETGALDAGCSGGAVSVTGQGP
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mRNA from alignment at D-dudresnayi_contig10187:347..3342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10187.225.1 ID=mRNA_D-dudresnayi_contig10187.225.1|Name=mRNA_D-dudresnayi_contig10187.225.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2996bp|location=Sequence derived from alignment at D-dudresnayi_contig10187:347..3342+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCAGGCATCGGGGGCGGGGCGTATCTAGACGGCTCTAACGCCACCCTGCG CGACTGCCGGTTCGAGGCTAATAGCGCGGAGGGGAGTGACCTGTTCGGCC AGTTGGCGTCCTTCGGGGGGGGGCTGGCTACTCGTGGCCCCACCTATCTG ACCACCATCAGGCAAGTACAGTACCCGTTCGTTTCGGAAGAAGAACAAGG TGGTGTGATGTGGTTGATTGACTCCCCGTCGTGACCAAGTCGAGGACGGA AATATTTTCGATCCTCAGATCCGGGGTTGCATAGCAGGCATTCCTCGCAC CTCCCCACTACGCTCTACTGTACGTGCGTATAATTTTATCGCGACAAGGG TGCAGCACTTTCTTCCCTTGTCGACTCGCGTGTAATGGCGCACACCCAAC GGTATTGTAGGCGCTTTCAGCAGTCGAGTTGTTACGCAAGAAAAAAGTCC CTCGGGGGGGCTCGAACTTGTGACCTCGTCCTTTGTAGATTTGTAGCTTA TCCCCAACGAGTACGTAGACACGAAGGTTGTCGGGTTTCATATGGAAATA AACAAAACAAAATGATGCTGAAAACATGCAATATAATCTCTATTTATTTG GCCCCGGTTAATATCACGGAGGAACGTTGTAAATAGTAAATACGAAATAC GAACAAATATACGAAGTACAAAATGGTTTATTTCCTGCTCACTACACTTA CTTGGAGAGTAGGGTAGTACGTGAAATATATGGTAGGACACTTTGTTTTT GGGCCCACGGCCGATTGGGTAGGCTCGCTTCTTAATTAGTTTTTGTACTT GCATGGAGGTGTGGCTTTGGTATGTCTGTTTTGTGTACTCTGGCCCCGTT AGCTACGTTCTTCTGTGATATGGCCCTGTTTACTACGTTGCTCTGGGAGT TGGTTCTGTTTACTATGTTCCGCGATTTGGTCCTGCTTACGGTACTGCGT TCCTATGTGATGTGTTCCTGCTTACTACAATCCACTGTGTACTCGGTGTA TAAATGCACATACGTGGGGGTATTTTTTAATAAAATGCCCGGACCTGCCT GCAGGACAGCGTTCCAGAGTCTTTCCAAGCACAGCGACCCAAAGCACACC AAACAGTCCTCCGGTATACTTCGTATACAATAAGGTTGGAGTTAGAGTTA GGGTTAGGGTTCGGTATAAGGTTGGGGTTAGGGTTTGGGTTAGGGTTCGG TATAAGGTTGGGGTTAGGGTTAGGGTTCGGTATAAGGTTGGGGTTAGGCT TAGGGTTCGGTAAAAGGTTAGGGTTAGGGTTAGGGTTCGATATAAGGTTG GGGTTAGGGTTAGGGTTCGGTATAAGGTTGGGGTTAGGGTTCCGGGTCGA GGTGGTGGCCGCCGTGAGGGCGAGGCCAAAACCCCCGAAAAAACCTCTCA AGTCGGGAAAACATGCCACAGATGTCGTTGACAAAAACCTACCTCACTAA AACAAAGTCATATTTTTTATCCGGGCTTTTTGTAGAACAAATGCCCCCAC GTGCATTTATACGGGTTGCCTCCACTGTGATTTTGGTCCTGTTTTCTGAT TTCCTCTGTGATTTGGCCCTGTCTACTATGTTACCATATGGTCTGGTCCT GTCTACAACGTTCCTTCGTGATAGTCCCTCCTAGCACACTAGATAATGGC GAGAGAACGATCGTTATCCTAGGAGATAGATGGTGGCCACTAAAGGCGAA AACAGGAAGGGGACAAAATACTTTATGCAAAATGTGTTTTTTCTTTTTTA GATATGGCAAAAGCGTGAAGAGCGCCGCCCAAATATTGGAGGTGTCTCGA TTTATCATAGGAGTAGGAACCGTGTTCAGTCTCGAAAGGGATGCGTGGTC AATGGTCAAATGACGAAGGCATGCAACTAGTGAGTACCCCCCCCCCTCGC CGCCGTCGCCGCCCCGTATTTTCAGCGACTGTTTATTTGTCGGTAATGCC GCCGGTCGGGGAGGCTCTGGTGGGGGAATTTGGGTCGAGGACGGCACTAC GGCTGTACTGTCCAACACTTCTGTCGTCGGTAACACGGCCGCGTCGAGCT ACACCCACAAGGGGGCTGGCGGGGGGGTGGCGGTGTCCGCGTCTGCCAGT CTGGACATGTCCCAGGGGTGCCTTCTAGAGGGCAACGTCGCCGGCCCGGA GGTGTGTGTGTGTGTGTGCGTGTGTTACTGACGCCAGTGTGTTTTGTGTG TGTTGGTGGTAGTGTGTGTGTGTGCTGTGTGGGTAGGTGCATGTTTTGTG TGCGGTGTAATTATGTGGGTATATGTGTGTGTTTGTGTGTGTTCGGGGGG GGGGTAGATATGTGTCATAGCCCCCCCCCCCCCCCTTCGGGGCCTTTCTC GGCGTTAATATACTAGGTTTATTATAGGGTTTCCATGACTGGCCATCCGT CAAGGGGAAAAAAATATCGTACTCTATGATGGCATTGTTGGGTATGGGTG TGGTATGTTTTAGGTGCTGATTATGGTTAGGGTTGGGGTTGGGGTTGGGG TCTACGCCGCACTTCTCTTCGAGCGCGCGCTTTCTCTGTTGTAGCTAATG ATATGATACTGTAGCCCGAGAATCGTTCGCGCAAAAGCTAGGACAACCCA AAGCATTGTTCGCGCAAAAAATAGGACAACCCGCTACACCCTAAAGATAC CGTGTGCAAACAAAAAAGTGTAATCAGTAACCGGACGTCTTTGTTGACCC CCCGTCCCCCCGTCTCCGTCGCCGTCTCGAAAGGGATGTGTGATCAATGG TGAAATGAGTAAGGCAAGTAATACATGAGTACCCCCACTCCCCCCTCGTC TCCCCCCTTCCCCCCGTCTCCCCAGGATGTCGGGGCTTCCGACCCCGCAT GCTTGTCCGGCGAGGGCGGCGCGATTTACTCTTCGGGATCGGGTCTCACC TTGCAAGGCGTTATCCTTCGGCGAAACCGCTGTGAGACTGGGGCTCTGGA TGCCGGGTGTTCCGGCGGTGCTGTTAGCGTTACGGGTCAGGGGCCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10187:347..3342+

>mRNA_D-dudresnayi_contig10187.225.1 ID=mRNA_D-dudresnayi_contig10187.225.1|Name=mRNA_D-dudresnayi_contig10187.225.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at D-dudresnayi_contig10187:347..3342+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCAGGCATCGGGGGCGGGGCGTATCTAGACGGCTCTAACGCCACCCTGCG
CGACTGCCGGTTCGAGGCTAATAGCGCGGAGGGGAGTGACCTGTTCGGCC
AGTTGGCGTCCTTCGGGGGGGGGCTGGCTACTCGTGGCCCCACCTATCTG
ACCACCATCAGGCAAGTACAGCAGGCATCGGGGGCGGGGCGTATCTAGAC
GGCTCTAACGCCACCCTGCGCGACTGCCGGTTCGAGGCTAATAGCGCGGA
GGGGAGTGACCTGTTCGGCCAGTTGGCGTCCTTCGGGGGGGGGCTGGCTA
CTCGTGGCCCCACCTATCTGACCACCATCAGGCAAGTACACGACTGTTTA
TTTGTCGGTAATGCCGCCGGTCGGGGAGGCTCTGGTGGGGGAATTTGGGT
CGAGGACGGCACTACGGCTGTACTGTCCAACACTTCTGTCGTCGGTAACA
CGGCCGCGTCGAGCTACACCCACAAGGGGGCTGGCGGGGGGGTGGCGGTG
TCCGCGTCTGCCAGTCTGGACATGTCCCAGGGGTGCCTTCTAGAGGGCAA
CGTCGCCGGCCCGGAGCGACTGTTTATTTGTCGGTAATGCCGCCGGTCGG
GGAGGCTCTGGTGGGGGAATTTGGGTCGAGGACGGCACTACGGCTGTACT
GTCCAACACTTCTGTCGTCGGTAACACGGCCGCGTCGAGCTACACCCACA
AGGGGGCTGGCGGGGGGGTGGCGGTGTCCGCGTCTGCCAGTCTGGACATG
TCCCAGGGGTGCCTTCTAGAGGGCAACGTCGCCGGCCCGGAGGATGTCGG
GGCTTCCGACCCCGCATGCTTGTCCGGCGAGGGCGGCGCGATTTACTCTT
CGGGATCGGGTCTCACCTTGCAAGGCGTTATCCTTCGGCGAAACCGCTGT
GAGACTGGGGCTCTGGATGCCGGGTGTTCCGGCGGTGCTGTTAGCGTTAC
GGGTCAGGGGCCGGATGTCGGGGCTTCCGACCCCGCATGCTTGTCCGGCG
AGGGCGGCGCGATTTACTCTTCGGGATCGGGTCTCACCTTGCAAGGCGTT
ATCCTTCGGCGAAACCGCTGTGAGACTGGGGCTCTGGATGCCGGGTGTTC
CGGCGGTGCTGTTAGCGTTACGGGTCAGGGGCCG
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