mRNA_D-dudresnayi_contig10176.220.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10176.220.1
Unique NamemRNA_D-dudresnayi_contig10176.220.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.010e-15
Identity = 29/104 (27.88%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLTRAQI 312
            +  ++ AC    EAW+++ +W  P           + E++ M+PGEDP+++F+RVD ++++++A+G+ K+E  +   IV  L H+ D+++++  +   ++RA++
Sbjct:   10 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILVDPTISRAKV 113
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BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5JQJ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.450e-14
Identity = 29/104 (27.88%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLTRAQI 312
            +  ++ AC    EAW+++ +W  P           + E++ M+PGEDP+++F+RVD ++++++A+G+ K+E  +   IV  L H  D+++ +      ++RA++
Sbjct:   10 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHKYDIERESILADPTISRAKV 113
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BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5JQ49_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.080e-14
Identity = 29/104 (27.88%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLTRAQI 312
            +  ++ AC    EAW+++ +W  P           + E++ M+PGEDP+++F+RVD ++++++A+G+ K+E  +   IV  L H+ D+++++      ++RA++
Sbjct:   10 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKV 113
[Close]
BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5JS28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.930e-14
Identity = 29/104 (27.88%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLTRAQI 312
            +  ++ AC    EAW+++ +W  P           + E++ M+PGEDP+++F+RVD ++++++A+G+ K+E  +   IV  L H+ D+++++      ++RA++
Sbjct:   10 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKV 113
[Close]
BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.800e-14
Identity = 29/104 (27.88%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLTRAQI 312
            +  ++ AC    EAW+++ +W  P           + E++ M+PGEDP+++F+RVD ++++++A+G+ K+E  +   IV  L H+ D+++++      ++RA++
Sbjct:  142 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKV 245
[Close]
BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.840e-14
Identity = 29/104 (27.88%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLTRAQI 312
            +  ++ AC    EAW+++ +W  P           + E++ M+PGEDP+++F+RVD ++++++A+G+ K+E  +   IV  L H+ D+++++      ++RA++
Sbjct:  197 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKV 300
[Close]
BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.900e-14
Identity = 29/104 (27.88%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLTRAQI 312
            +  ++ AC    EAW+++ +W  P           + E++ M+PGEDP+++F+RVD ++++++A+G+ K+E  +   IV  L H+ D+++++      ++RA++
Sbjct:  142 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKV 245
[Close]
BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.990e-14
Identity = 29/104 (27.88%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLTRAQI 312
            +  ++ AC    EAW+++ +W  P           + E++ M+PGEDP+++F+RVD ++++++A+G+ K+E  +   IV  L H+ D+++++      ++RA++
Sbjct:  142 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKV 245
[Close]
BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.680e-12
Identity = 31/92 (33.70%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:    1 LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQVYFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRT 276
            +   ++AC    EAW  + +W  P      +    + E+V M PGE+P+++F+RVD IV+ + A+G+ K+E ++   IV  L+ D DV+++T
Sbjct:  460 IEETLFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVERKT 551
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10176.220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K4K8_9PHAE8.010e-1527.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQJ2_9PHAE1.450e-1427.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ49_9PHAE8.080e-1427.88Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS28_9PHAE8.930e-1427.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP6_9PHAE9.800e-1427.88CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE9.840e-1427.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A7_9PHAE9.900e-1427.88CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE9.990e-1427.88CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L089_9PHAE5.680e-1233.70Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10176contigD-dudresnayi_contig10176:7837..8148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.334356-CDS-D-dudresnayi_contig10176:7836..81481622927517.334356-CDS-D-dudresnayi_contig10176:7836..8148Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10176 7837..8148 +
1690556789.0053704-CDS-D-dudresnayi_contig10176:7836..81481690556789.0053704-CDS-D-dudresnayi_contig10176:7836..8148Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10176 7837..8148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10176.220.1prot_D-dudresnayi_contig10176.220.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10176 7837..8148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10176.220.1

>prot_D-dudresnayi_contig10176.220.1 ID=prot_D-dudresnayi_contig10176.220.1|Name=mRNA_D-dudresnayi_contig10176.220.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=104bp
LANKIYACGSPSEAWAMLDDWYKPRGVVMLQQCTAKFESVRMYPGEDPQV
YFSRVDDIVDMLEALGVHKTEGEVNMKIVGHLTHDCDVKQRTAFMQENLT
RAQI
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mRNA from alignment at D-dudresnayi_contig10176:7837..8148+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10176.220.1 ID=mRNA_D-dudresnayi_contig10176.220.1|Name=mRNA_D-dudresnayi_contig10176.220.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at D-dudresnayi_contig10176:7837..8148+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTTGCGAACAAAATCTATGCGTGTGGTTCGCCAAGCGAGGCATGGGCAAT
GCTTGATGATTGGTACAAGCCCAGAGGCGTAGTGATGCTGCAGCAATGTA
CTGCGAAATTTGAGAGCGTCCGCATGTACCCGGGGGAAGACCCCCAAGTA
TACTTCAGCCGCGTCGATGATATTGTCGATATGCTAGAGGCGCTCGGTGT
ACACAAGACGGAGGGTGAGGTCAACATGAAGATAGTAGGCCACCTGACCC
ATGACTGTGACGTGAAACAGCGTACCGCGTTCATGCAAGAAAACTTGACC
CGCGCGCAAATC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10176:7837..8148+

>mRNA_D-dudresnayi_contig10176.220.1 ID=mRNA_D-dudresnayi_contig10176.220.1|Name=mRNA_D-dudresnayi_contig10176.220.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at D-dudresnayi_contig10176:7837..8148+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTTGCGAACAAAATCTATGCGTGTGGTTCGCCAAGCGAGGCATGGGCAAT
GCTTGATGATTGGTACAAGCCCAGAGGCGTAGTGATGCTGCAGCAATGTA
CTGCGAAATTTGAGAGCGTCCGCATGTACCCGGGGGAAGACCCCCAAGTA
TACTTCAGCCGCGTCGATGATATTGTCGATATGCTAGAGGCGCTCGGTGT
ACACAAGACGGAGGGTGAGGTCAACATGAAGATAGTAGGCCACCTGACCC
ATGACTGTGACGTGAAACAGCGTACCGCGTTCATGCAAGAAAACTTGACC
CGCGCGCAAATCCTTGCGAACAAAATCTATGCGTGTGGTTCGCCAAGCGA
GGCATGGGCAATGCTTGATGATTGGTACAAGCCCAGAGGCGTAGTGATGC
TGCAGCAATGTACTGCGAAATTTGAGAGCGTCCGCATGTACCCGGGGGAA
GACCCCCAAGTATACTTCAGCCGCGTCGATGATATTGTCGATATGCTAGA
GGCGCTCGGTGTACACAAGACGGAGGGTGAGGTCAACATGAAGATAGTAG
GCCACCTGACCCATGACTGTGACGTGAAACAGCGTACCGCGTTCATGCAA
GAAAACTTGACCCGCGCGCAAATC
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