mRNA_D-dudresnayi_contig10169.216.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10169.216.1
Unique NamemRNA_D-dudresnayi_contig10169.216.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.740e-23
Identity = 59/115 (51.30%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  192 RKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYSRRR--LPASGRFCG----GASGKDNGDEDRVLAGDLLLARGQA-LKRCRMSASPATGLVGMQENALLSDYFNCLGIMPITGQ 515
            RKSC  CG +KR+CDG  PCSRC + G+ C YS+R+   P  GR       G +G    D  R  A   LL  G   LKR ++SASPATGLVGMQENA LSD+F C+G MP T +
Sbjct:   19 RKSCGACGRKKRKCDGLMPCSRCLRAGVRCTYSKRKPHQPQLGRQHQRRPRGPAGVQTADMFRPSASGTLLPGGMLPLKRLKLSASPATGLVGMQENAFLSDFFGCVGFMPFTSR 133          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.770e-22
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  114 VASRSDLAWSTRGATRMRIQSVPANRRKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYSRRR-----LPASGRFCGGASGKDNGDEDRVLAGDLLLARGQALKRCRMSASPATGLVGMQENALLSDYFNCLGIMPIT 509
            ++SR   + ST  ++RMR         +SC  C   K++CDG TPCSRC   G+ C+Y +R+          +  G A  +    +   L+G  L      LKRCR+SASPATGLVGMQENA LSD+F C+G +P+T
Sbjct:    1 MSSREKGSASTDSSSRMR---------RSCCECARHKKKCDGLTPCSRCIGAGVQCIYIKRKSTHPQYQRKQQLRGLAGTQSTELQRHSLSGAFLARDTLPLKRCRLSASPATGLVGMQENAFLSDFFGCVGFLPLT 128          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: D8LU21_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU21_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.560e-22
Identity = 58/113 (51.33%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  192 RKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYSRRR--LPASGRFCG----GASGKDNGDEDRVLA-GDLLLARGQALKRCRMSASPATGLVGMQENALLSDYFNCLGIMPIT 509
            RKSC  CG +KR+CDG  PCSRC   G+ C Y +R+   P  GR       G +G    D  R+ A G LL  R   LKR ++SASPATGLVGMQEN  LSD+F C+G MP T
Sbjct:   19 RKSCCACGRKKRKCDGLMPCSRCLGAGVRCTYRKRKPHQPQPGRQHQRRPRGPAGMQTADLLRLSASGTLLACRMLPLKRLKLSASPATGLVGMQENTFLSDFFGCVGFMPFT 131          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: D8LU17_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 5.190e-21
Identity = 63/158 (39.87%), Postives = 82/158 (51.90%), Query Frame = 3
Query:   93 DSNPHADVASRSDLAWSTRGATRMRIQSV----PANRRKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYSRRRL---------------PASGRFCGGASGKDNGDEDRVLAGDLLLARGQALKRCRMSASPATGLVGMQENALLSDYFNCLGIMPIT 509
            DS P +  A   D A S    +     SV     A  R+SC  C  +KR+CDG TPCSRC K G  C Y++R+                PA+      +SG        + AG +L     ALKR R+ ASPATGLVGMQENA L+D+F C+G++P+T
Sbjct:   56 DSEPLSMHAGSRDAAISAMCVSSKEAGSVLALTNAGMRRSCSECVRKKRKCDGLTPCSRCLKAGARCTYTKRKWHQRQPGHRQQHQSNGPAAMHSTDSSSGT-------LPAGGML-----ALKRFRLGASPATGLVGMQENAFLNDFFGCVGLLPLT 201          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.890e-20
Identity = 58/122 (47.54%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  174 SVPANR---RKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYSRRR--LPASG----RFCGGASGKDNGDEDRVLAGDLLLARGQA-LKRCRMSASPATGLVGMQENALLSDYFNCLGIMPIT 509
            SV AN    R+SC  CG +KR+CDG  PCSRC + G+ C YS+R+   P +     R   G +   + +  R  +   L A G   LKR R+SASPATGLVGMQENA LSD+F C+G +P+T
Sbjct:   10 SVVANNLGMRRSCCECGRKKRKCDGMAPCSRCLRSGVQCTYSKRKPHQPQTQHQHQRRPRGPACMPSTELLRHSSSGALQASGMLPLKRFRLSASPATGLVGMQENAFLSDFFGCVGFLPLT 131          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.260e-19
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  192 RKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYSRRRL----PASGRFCGGASGKDNGDEDRVLAGD-----LLLARGQALKRCRMSASPATGLVGMQENALLSDYFNCLGIMPIT 509
            R+SC  CG +K+ CDG  PC RC + G  C YS+RR     P   +     S +D      VL        L+ +    LKR R+SASPA GLVGMQE+A LSD+F C+G +P+T
Sbjct:   24 RRSCSECGRKKKSCDGRRPCGRCVRTGSNCTYSKRRWHLPQPHGQQHQPRPSRRDRTHRKEVLLQSSPPEALVSSARLPLKRLRLSASPAVGLVGMQESAFLSDFFGCVGFLPLT 138          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.320e-19
Identity = 52/114 (45.61%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  192 RKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYSRRRL----PASGRFCGGASGKDNGDEDRVLA----GDLLLARGQALKRCRMSASPATGLVGMQENALLSDYFNCLGIMPIT 509
            R+SC  CG +K+RCDG  PC RC   G  C Y  RR     P   +       +D      VL     G L+      LKR R+SASPATGLVGMQENA LSD+F C+G +P+T
Sbjct:   30 RRSCTECGRKKKRCDGQQPCRRCVGSGGQCAYIMRRWHLLKPHQQQHQSQRPDRDGAHGREVLQSAQPGALVTCGMLPLKRFRLSASPATGLVGMQENAFLSDFFGCVGFVPLT 143          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.770e-18
Identity = 53/120 (44.17%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  192 RKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYS--RRRLPASGRFCGGASGKDNGDEDRVLAGDL---------LLARGQA-LKRCRMSASPATGLVGMQENALLSDYFNCLGIMPITGQ 515
            R+SC  CG +K+RCDG  PC RC + G  C YS  RRRL  + +     +     D D    G++         L   G+  L R  +SASPATGLVGMQENA LSD+F C+G +P+T Q
Sbjct:   29 RRSCSECGRKKKRCDGQRPCRRCVRSGSQCTYSKRRRRLLQTHK----QTHLRQPDRDGAHGGEVPLHSTPPGALATSGRLPLARFGLSASPATGLVGMQENAFLSDFFGCVGFLPLTTQ 144          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: A0A6H5K8L6_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.440e-15
Identity = 49/113 (43.36%), Postives = 62/113 (54.87%), Query Frame = 3
Query:  180 PANRRKSCDYCGLRKRRCDGHTPCSRCTKKGLPCVYSRRRLPASGRFCG---GASGKDNGDEDRVLAGDLLLARGQALKRCRMSASPATGLVGMQENALLSDYFNCLGIMPIT 509
            P   +KSCD C  RK +C G TP   CT +G  C +SRRR     R+        G  NG ++ V+          + KR R+SASPATGLVGM+EN LLS +F C G  P+T
Sbjct:   22 PPRHKKSCDLCVARKVKCSGATPL--CTSRGSECHFSRRRPNRPRRYSKRSISGLGYRNGAKEGVVHQGKAEMPIASWKRARLSASPATGLVGMKENELLSSFFICFGFFPLT 132          
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Match: D7FMR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.210e-12
Identity = 44/92 (47.83%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  255 RCTKKGLPCVYSRR----RLPA---SGRFCGGASGKDNGDEDRVLAGDLLLARGQALKRCRMSASPATGLVGMQENALLSDYFNCLGIMPIT 509
            RC   G+ C YS+R    R P     GR  G A G  + +     +   LLA G    R R SASPATGLVGMQENA LSD+F C+G MP+T
Sbjct:    3 RCRGAGVQCTYSKRKPHQRQPGHQHQGRPRGPA-GMQSTELLHHSSSGALLACGMLPLRFRWSASPATGLVGMQENACLSDFFGCIGFMPLT 93          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10169.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8E7_9PHAE1.740e-2351.30Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU27_ECTSI1.770e-2241.61Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU21_ECTSI3.560e-2251.33Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU17_ECTSI5.190e-2139.87Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JBJ1_9PHAE2.890e-2047.54Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU13_ECTSI6.260e-1943.48Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JYW4_9PHAE6.320e-1945.61Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU16_ECTSI2.770e-1844.17Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5K8L6_9PHAE1.440e-1543.36Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FMR7_ECTSI6.210e-1247.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10169contigD-dudresnayi_contig10169:400..5591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size517
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10169.216.1prot_D-dudresnayi_contig10169.216.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10169 400..5505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.6965342-CDS-D-dudresnayi_contig10169:399..5051622927516.6965342-CDS-D-dudresnayi_contig10169:399..505Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10169 400..505 -
1690556788.57347-CDS-D-dudresnayi_contig10169:399..5051690556788.57347-CDS-D-dudresnayi_contig10169:399..505Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10169 400..505 -
1622927516.710818-CDS-D-dudresnayi_contig10169:1976..21321622927516.710818-CDS-D-dudresnayi_contig10169:1976..2132Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10169 1977..2132 -
1690556788.5833533-CDS-D-dudresnayi_contig10169:1976..21321690556788.5833533-CDS-D-dudresnayi_contig10169:1976..2132Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10169 1977..2132 -
1622927516.7201023-CDS-D-dudresnayi_contig10169:5338..55051622927516.7201023-CDS-D-dudresnayi_contig10169:5338..5505Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10169 5339..5505 -
1690556788.5929456-CDS-D-dudresnayi_contig10169:5338..55051690556788.5929456-CDS-D-dudresnayi_contig10169:5338..5505Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10169 5339..5505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.7299764-UTR-D-dudresnayi_contig10169:5505..55911622927516.7299764-UTR-D-dudresnayi_contig10169:5505..5591Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10169 5506..5591 -
1690556788.603009-UTR-D-dudresnayi_contig10169:5505..55911690556788.603009-UTR-D-dudresnayi_contig10169:5505..5591Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10169 5506..5591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10169.216.1

>prot_D-dudresnayi_contig10169.216.1 ID=prot_D-dudresnayi_contig10169.216.1|Name=mRNA_D-dudresnayi_contig10169.216.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=143bp
MFDSNPHADVASRSDLAWSTRGATRMRIQSVPANRRKSCDYCGLRKRRCD
GHTPCSRCTKKGLPCVYSRRRLPASGRFCGGASGKDNGDEDRVLAGDLLL
ARGQALKRCRMSASPATGLVGMQENALLSDYFNCLGIMPITGQ
back to top

mRNA from alignment at D-dudresnayi_contig10169:400..5591-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10169.216.1 ID=mRNA_D-dudresnayi_contig10169.216.1|Name=mRNA_D-dudresnayi_contig10169.216.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=5192bp|location=Sequence derived from alignment at D-dudresnayi_contig10169:400..5591- (Desmarestia dudresnayi DdudBR16 monoicous)
TGCCCCGCAGGCGTAGAGGTGTAGGGGTAGTAGTAGTCTGAAGGCTTTGC TTGTTGGCGCTGGGTGTCAGTTGTTCGTAGTGACGAATGTTTGATTCGAA CCCACACGCTGATGTTGCCAGTCGTTCGGACCTGGCGTGGTCAACACGAG GTGCTACTCGTATGCGGATACAGTCTGTACCCGCGAATAGGAGGAAGAGC TGCGATTATTGCGGGCTCCGCAAGCGGAGGTGTGACGGGCATACCCCATG CAGGTATGTAAACTCTGGCCCCACCACTGCTACACTAGCTCCAGTGCTCT TGTCTCTGTAGTCTCGTGCAGTATTATTGTCCCCTTTCTTCTTGTCCTTG TTCAAGTTGCGCTCGTATGTATAGTCTACACGAAAGCGACGACGAGCTAT TATAGACCTACGATTACGACTCGTACAACAGCAGTAGTAATATACTTAAG AGTATAATACTTCGAAGTAGGCAAATAGCCATCAGTACACCCGTATCAGT TCAGCGGCAGGGGTGTGTTCGATCACATGATACTATGGATTAAGCAGCCG TAGTACGAGTAGCAGTATCGTATTGTTATCTCAATAGCGTACGAGTACAA TAGTTTACCTCGGAGCACGAAAACATATGTGGTACGAATAGCCACAGAAA TCGCATCTTGGTATGTACCACAAAACAACTCTGTTACAAAGTAGTAGTCG CGTCCTACTTCGTATCATAGGATACAGCAGCATTACTGGGTAGTGTTTTT GTGGATACGTTGGTACTGATCAACAACAGTTGTTGTCACTAGGTACTCGT GCCAGAGGATATTTGTAACTATCGTCAATCGTCAACTGTGTACGCTGGTG GGGAGCCATGAAGTCGAACACGATGCACGCAGCAGCCGGAGGATGGTGTG AAAAAAACCCATATTCGACCGGTCTTTGGACGGTTATTCGGGCGTTCCTT GGACCGTGGACTGTATCTTTCGGAGATTTCCGCAGTAGTGTTTACTCGTT GGACGAGAAGTAGTGTTTAAAGCTGTCGTTGACGATACAAACTCTGTAAC AAAGGATTCGCTTCCCAACCTCATAGCCTCGATACAAGAGAACAGCAGAG AGAAAAAAACCACGTTTCCTCGATTTCACCGCAGAAGGCGTGAATTTTGA CCCCGCCGTAGTCATAGGGTGGATGGTTAGGGTCGGGTTGGGTCGGCTCG GCACAAATTGACATCAACAAAAATAACGTGTGTCTACCATCGTTTTCGTC TAACAGCCCTCGATTTTCGGTCGGGTTCCGGTCGTAGATTCAGGTTACCT TTTTCTGGCAATGAGCCCCCTACATTTTTGGTGCCGTCGGAAATTAGAAT CTCAGAACCTCGCTTCGCTCGTAATAAAACCGAGTATCTTGAAAGATTGT GTCGATAGGTGTGCAAAGGGACTCCCTGCATTCTTCTTGGTGGAAAATGA AGTTTCTCCGTTGTGCGCACAACATAGTTTGGGATTTTATTCAAAATTAG GGCCTGTCTCGTGTAGTTTTTTTCAAGCATTCATTGTCTGTCTTGTCAAA TGTTAAGAATTCTGAATTGGACTGTTGAAACTTACCGTTTGGGTCCGTTT GAGTCTTGACAAATTTCTCGAGCTTTGAACTTACAAGCAAGCAATGCGTA TCGCACAAGAAACCCAAGTGCACCACCGCAACACGCACACGACGACAACA CGCTCACAAAGGACGCAGCAAGCCTCTACTCGTAGTTGGTGCACGTGCTC ATTACACAGCTCGATACCGCCGTCCTGCTTTGTCAGCTCGGCAATCCGCG AAAATCACCATATGTTTTTGTTCTTGGCTCGAGCTCGCAGTACTGTTGTG CTATATTAAAGCTTCTGTGTGGGTGAACTGGGACGCATGACACTTCATCG TTATGTTTGCGATCCTGTTGTGTCGCGTGTCTTGTACTGTGACCTCGGGT GCGGCGCAACGGGCTTCACAGCACCTTGTTCAGTATTGTGCTATGTTGCA GCTTTTGGGCCACTCCCAAGAGTCGAGGCGTTTCTTGCTGGAATTCAGAA CATTTGAACAAATTAAGTGCTACGCTACTTCTTTTCTTCACAGCCTTCAT AATTCAGGATTTTCTTGCTCTTAACAAACTACGCAAAGGGGCTGCCCAAT CATAGAGTTTCATGTGGAGGCGTGTACTGATTTTTTGATATTTTTTTTAT TGTTGAGATTTGGTGAGACAGACCCTCAGGAGTTACGAAAATCTGGAATT GAAAAGCTGAAAATGACCTTTTGGGTCGTAACAAATGTCTCGAGCTTTGA GCTTGCAAGCAAACAATGCCGATAGCACAACAAACCCAAGTACACCTTGC CATGGAAACGGGATGTAACCCCTGCAGAAAGATGATAGGTGTGAACGATG TGTATTGCAGTAGCTTGATCAAGATTGTCTTTGATTATTGCCCAGCATTG GAGAGGAGACTGAAGGTAAAAACACGCACTGTTCGAAAGTGCGCTTCGTA CCCTCAACTTCTATTTAGTTATTTGCAAAACTTAAGGTCCGCGTAAGCTC AAAGGGCCACCAATATTTTACTTACGAGTACTGCTACAGTTTCTCGGCAC AGTTTACATCCGTTGACTCCCCGACTATGCATGAACAGCTCCCTTTCTGG TATCTCCCCGATTTTCCTAACGTGAATGATGTGGCCAGAACATATTGATT TTGTCCACGTTCTGCATGATACTACACGGTTTGGGGCACACGTTCTATCC ACACTTCCTGAATCGTTGAAGCGGTGCAGCAAGTACGTAGGATGGCTGGT ATTTCCAACCAGCTACATCGATTGTACCATGCAGGCTGGGTCGGCAAGCG GCGGGTGTACACATCTTATCGTTTATCGCGATGTATTCGCTGCTCACATC CGCAACGTGTAGTCACCCAAGATCCACTTGCTGTTGCAGGGTAGTGCAGA CCCAACCAATACGGCCGCATGGCGGTAGATTTTGGCCCGCATCATCCCGA TGTGACCCCGATGCGACGCCCTTGAGTTTGTCACAATCCTTGATTGGGGC ACACTGACTAGTAGTGAAGGATTTCGGAATGCCGCGCTCTCGGCGCTCGA GGACAGTGCTAAGTAGGTGCATAGTACCATAGGTAATGCCAACCACCCAC AATGCGACAGGCTAGACACTATTGCAAATGTGTCTCTGGTATGATAAGTC TCTCTGCTTACCAAAACACGTGTAATGCTGACCATCACCGCGGCTGATTC AGCTGCTTTTGTCCGATCATGCGATCCAAAGAATCGCCTGACGTCACTGC TGTCTGTACCTTTCTTTTGTGTGTCTCGTGCCCGCAGTGCGGTGCAACCT TTTCTGACAATATATCTGTTTTTTTTGCTCAGTTGGTCAATGCTTACATG CTCACCTACACTCAACCACCCACCCTCCCACGTTGTTTTGCTCTCGTGGC GCTGACCAGTCGTTGCACGAAGAAGGGCCTGCCGTGCGTCTACAGCCGGA GACGGCTGCCGGCCTCGGGCCGTTTTTGTGGAGGCGCCTCGGGCAAAGAC AACGGTGACGAAGACCGGGTGCTAGCGGGGGATCTGCTGCTCGCGAGAGG GCAAGCTCTAAAGAGGTGTGGTGTTGTTGCCTTCCCTCCTTTTTGGGTAC CTTTTTTCGAAACGTTTTTTCAAACTTATTCAACGTGCGTATTAGAGTTG TACCCCTCTAAGTACCCGCGGGTGACGGGTGTGTTCGAAAGGGTTTCAAA ATCCCAATACCCGACCCTACGCGCGGGTATTGACCTTTTTTTGGCCGGTA CCCGGGTACTCGCCAAAAACGCCGGGTACCGTGTTTGGCGGGTACCCGCG ACAAAATCGAACCCGATACCCGCGGGTTTGACGGGTGCCCGCGACTCCAA CAGTCGTACCCGACCCGCCAACGGGTATTACCCGTCCAGGTATACCCATC GGATACTCGCGGGTAGTCCAAAAGGGTTGGAAATCTAGCTGCTTGCCAGG TATTAAGCACCGTGTGTACGTACCAATGTGAGGAGTACACAGTGGCGCAA GTAATTTTGGCGCCAGAAATATTTTTCAACAAGTTTTATAGATGTATTGT GGAGAGATATGGAACCGGGATCCGGGAAACCCCGCCGATACCCGCGGGTT TGACGGGTACCCGGGTACCCAGACCCCAAATACCCGCGGTTCCTCGGGTA CCCGCGAGTCCAAAAGTCGTACCCGACCCGCCAACGGGTATCACCCGTCC GGGTATACCCGCCGGGTACCCGCGGGTAGTCCGAAAGAGGTTCAACTCTA GTGCGTATGTCATATTGAACTAACCCCAAGAGGCAAGTAGCGCTTCTTCG TACTGGAGCACGGCCAGGGGCGTTTACGGTGATATTTCCGTGGCGAACGA GCCCCTCCTCGCAGCACAAACACCCACAAACTGATGCTGTCGCCGCGGCA AGGTTGTGCTCTGCAACATAATTTGATCGCCACAAACACACCGCTTGCAG AGGGGGGGTGGGGTGACTTTAGGCTCTAGTGTTACCATTGCGCCGGAGGA TGCAAAAACCATTAGTATAAAAAAAGACGAACACATAAGAGTACACCTGA CAGTATGTCACTTTGCCCGGGAATATAGAGACCGTTTGATTTTTTATTTT TTTTTTATCTGTCGTTTTGAATTTTTTCATTTTGTCAATTCATAAATACA ATTTTTGCGCGTACCACAGTATGTTGTATGTTGTTAATTCATTAATTTTC ACCTCCGAAGGAAGACGGCCCAAATTTCATGAAACGCCAAAAATGTAATC AAAATTAACTCATACTAATATAGAAATCCCCATTCCGAGTGGAAACCCGG GGATTTTTCCGACCATCCCCGGTTTTTACCCCGGCCTTTTCTTTTTCTTG TCGTACGGTATAGTCGTGGCTCTATTAATCGTAAAGATTTGTGTTGCCAC GTGGCTACACAACAGGGACGGCGCAGACAACCAGAAGCAGGTGAAGTTGA GCAGAGAAGGCAGCATGAAGTCAGTGCTATGATACCAAAGGGCGCTCTAG CCTTTCATTGTTGTCCCCCCCCCCCCCCTCCTTTAGGTGCCGTATGAGCG CCTCTCCAGCGACGGGTTTAGTGGGCATGCAGGAGAACGCCTTGTTGAGC GATTACTTCAACTGCCTCGGCATCATGCCGATCACTGGCCAG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10169:400..5591-

>mRNA_D-dudresnayi_contig10169.216.1 ID=mRNA_D-dudresnayi_contig10169.216.1|Name=mRNA_D-dudresnayi_contig10169.216.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at D-dudresnayi_contig10169:400..5591- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTTGATTCGAACCCACACGCTGATGTTGCCAGTCGTTCGGACCTGGC
GTGGTCAACACGAGGTGCTACTCGTATGCGGATACAGTCTGTACCCGCGA
ATAGGAGGAAGAGCTGCGATTATTGCGGGCTCCGCAAGCGGAGGTGTGAC
GGGCATACCCCATGCAGATGTTTGATTCGAACCCACACGCTGATGTTGCC
AGTCGTTCGGACCTGGCGTGGTCAACACGAGGTGCTACTCGTATGCGGAT
ACAGTCTGTACCCGCGAATAGGAGGAAGAGCTGCGATTATTGCGGGCTCC
GCAAGCGGAGGTGTGACGGGCATACCCCATGCAGTCGTTGCACGAAGAAG
GGCCTGCCGTGCGTCTACAGCCGGAGACGGCTGCCGGCCTCGGGCCGTTT
TTGTGGAGGCGCCTCGGGCAAAGACAACGGTGACGAAGACCGGGTGCTAG
CGGGGGATCTGCTGCTCGCGAGAGGGCAAGCTCTAAAGAGTCGTTGCACG
AAGAAGGGCCTGCCGTGCGTCTACAGCCGGAGACGGCTGCCGGCCTCGGG
CCGTTTTTGTGGAGGCGCCTCGGGCAAAGACAACGGTGACGAAGACCGGG
TGCTAGCGGGGGATCTGCTGCTCGCGAGAGGGCAAGCTCTAAAGAGGTGC
CGTATGAGCGCCTCTCCAGCGACGGGTTTAGTGGGCATGCAGGAGAACGC
CTTGTTGAGCGATTACTTCAACTGCCTCGGCATCATGCCGATCACTGGCC
AGGTGCCGTATGAGCGCCTCTCCAGCGACGGGTTTAGTGGGCATGCAGGA
GAACGCCTTGTTGAGCGATTACTTCAACTGCCTCGGCATCATGCCGATCA
CTGGCCAG
back to top