mRNA_D-dudresnayi_contig1016.212.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1016.212.1
Unique NamemRNA_D-dudresnayi_contig1016.212.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1016.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1016contigD-dudresnayi_contig1016:8076..8770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.160764-CDS-D-dudresnayi_contig1016:8075..81631622927516.160764-CDS-D-dudresnayi_contig1016:8075..8163Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 8076..8163 +
1690556788.2644162-CDS-D-dudresnayi_contig1016:8075..81631690556788.2644162-CDS-D-dudresnayi_contig1016:8075..8163Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 8076..8163 +
1622927516.2094028-CDS-D-dudresnayi_contig1016:8564..87701622927516.2094028-CDS-D-dudresnayi_contig1016:8564..8770Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 8565..8770 +
1690556788.273069-CDS-D-dudresnayi_contig1016:8564..87701690556788.273069-CDS-D-dudresnayi_contig1016:8564..8770Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 8565..8770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1016.212.1prot_D-dudresnayi_contig1016.212.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1016 8076..8770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1016.212.1

>prot_D-dudresnayi_contig1016.212.1 ID=prot_D-dudresnayi_contig1016.212.1|Name=mRNA_D-dudresnayi_contig1016.212.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=98bp
AVEVSSSSESSAASSRSTSRTTPKKVKQEVPPTSADHSQTKKQTPHSSSS
SSAPTMPPPGQEVAPLRTPSSRMADVSGMSPSVESSILKKARESARVE
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mRNA from alignment at D-dudresnayi_contig1016:8076..8770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1016.212.1 ID=mRNA_D-dudresnayi_contig1016.212.1|Name=mRNA_D-dudresnayi_contig1016.212.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=695bp|location=Sequence derived from alignment at D-dudresnayi_contig1016:8076..8770+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCCGTCGAGGTGTCTTCTTCATCGGAATCGTCTGCTGCATCGTCACGTTC
AACTTCACGTACGACCCCGAAAAAAGTCAAGCAAGAAGGTGATGTGCAGT
TGCCGAAGAAGTATACTGGATTGTGACCCGGTCCGCCCTTGCAGTCAGTC
TCTCTGATTGAAGGGATTGAAGGGGTACGGCTACTGTCTTCCTGGCGTAC
ATTGCAACCAAGTTCCATGAACAGCGGTATTTTTTCTTAGACTTCGGTAA
CGCCTGAACCCTACGTCTACTGTAGTACATGGTCGGATTTTACGTGGTTG
GTCGGATTTTGATACCACCCACTGCCCGAAGCCTAACCACGATGGTGTAC
ACACACCAAACAGTGCCATTAAGCTCCTACACAGCTTGGTCGCTCAACAT
CTCTGGGATAACTCGAACACTCCCCACATGACCGCCTTACCCCCCCCCCA
CCCCACGCATGCGCCCCCGTACCCCTTCCCTCATACCAGTGCCCCCTACA
TCCGCTGATCACAGCCAAACCAAGAAACAGACACCGCACTCCTCTTCGTC
CTCCTCCGCACCTACCATGCCGCCTCCCGGCCAAGAGGTAGCCCCACTAC
GAACTCCCTCCTCGCGCATGGCAGATGTCTCAGGTATGTCACCCTCAGTC
GAAAGCAGCATCTTAAAGAAGGCCAGAGAGTCCGCAAGGGTGGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1016:8076..8770+

>mRNA_D-dudresnayi_contig1016.212.1 ID=mRNA_D-dudresnayi_contig1016.212.1|Name=mRNA_D-dudresnayi_contig1016.212.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at D-dudresnayi_contig1016:8076..8770+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCCGTCGAGGTGTCTTCTTCATCGGAATCGTCTGCTGCATCGTCACGTTC
AACTTCACGTACGACCCCGAAAAAAGTCAAGCAAGAAGGCCGTCGAGGTG
TCTTCTTCATCGGAATCGTCTGCTGCATCGTCACGTTCAACTTCACGTAC
GACCCCGAAAAAAGTCAAGCAAGAAGTGCCCCCTACATCCGCTGATCACA
GCCAAACCAAGAAACAGACACCGCACTCCTCTTCGTCCTCCTCCGCACCT
ACCATGCCGCCTCCCGGCCAAGAGGTAGCCCCACTACGAACTCCCTCCTC
GCGCATGGCAGATGTCTCAGGTATGTCACCCTCAGTCGAAAGCAGCATCT
TAAAGAAGGCCAGAGAGTCCGCAAGGGTGGAGTGCCCCCTACATCCGCTG
ATCACAGCCAAACCAAGAAACAGACACCGCACTCCTCTTCGTCCTCCTCC
GCACCTACCATGCCGCCTCCCGGCCAAGAGGTAGCCCCACTACGAACTCC
CTCCTCGCGCATGGCAGATGTCTCAGGTATGTCACCCTCAGTCGAAAGCA
GCATCTTAAAGAAGGCCAGAGAGTCCGCAAGGGTGGAG
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