mRNA_D-dudresnayi_contig1016.211.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1016.211.1
Unique NamemRNA_D-dudresnayi_contig1016.211.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1016.211.1 vs. uniprot
Match: D7G079_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G079_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.490e-26
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  166 RKQCEVPGCFVQSSYGVKGTGRPRFCTEHKKKGMVGMKNRPCLHPGCSTRPHYGKSEXXXXXXXXXXXXXXXHLLKEAV-LKKEEIA 423
            RK CEV GC VQ SYG+ GT RPRFC EHK KGMVG+KNRPCL PGC+TRPHYG S+               HLLKE++ ++KE IA
Sbjct:   66 RKLCEVEGCLVQPSYGLSGTSRPRFCREHKSKGMVGLKNRPCLFPGCTTRPHYGLSKGRAMYCASHKKDGMVHLLKESLNMEKERIA 152
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BLAST of mRNA_D-dudresnayi_contig1016.211.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 5.740e-20
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:  166 RKQCEVPGCFVQSSYGVKGTGRPRFCTEHKKKGMVGMKNRPCLHPGCSTRPHYGKSEXXXXXXXXXXXXXXXHLLKEAV-LKKEEIARER 432
            R++CE P C +Q SYG  GT RPRFC+ HK+K MV +KNRPCL PGC  RPHYG S                HLLKEA  L+KEE+ R+R
Sbjct:  255 RRKCEAPDCTIQPSYGDPGTSRPRFCSSHKEKQMVSLKNRPCLFPGCDIRPHYGLSMGRAVYCVSHKKDGMVHLLKEAKNLEKEELKRKR 344
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BLAST of mRNA_D-dudresnayi_contig1016.211.1 vs. uniprot
Match: A0A7S3XRW7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRW7_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 2.550e-8
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  139 RPPMLTPSGRK---QCEVPGCFVQSSYGVKGTGRPRFCTEHKKKGMVGMKNRPCLHPGCSTRPHY 324
            R PM+T  G+K   QC+  GC  Q S+   G    R+C +HK +GMV +K + C+HPGC+ RP +
Sbjct:   76 RYPMVTMLGQKSMRQCQADGCVTQPSFNFPGRTGGRYCLKHKAEGMVDVKAKKCIHPGCTKRPSF 140
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BLAST of mRNA_D-dudresnayi_contig1016.211.1 vs. uniprot
Match: A0A6C0DM39_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DM39_9ZZZZ)

HSP 1 Score: 53.5 bits (127), Expect = 6.840e-5
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:  175 CEVPGCFVQSSYGVKGTGRPRFCTEHKKKGMVGMKNRPCLHPGCSTRP 318
            CE   C + + + ++G    RFC  HK+ GMV +K+R C+HPGC T+P
Sbjct:   40 CET--CGINAIFNIEGENWGRFCKTHKELGMVDVKSRTCIHPGCKTQP 85
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1016.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G079_ECTSI1.490e-2659.77EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G084_ECTSI5.740e-2053.33Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A7S3XRW7_HETAK2.550e-843.08Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6C0DM39_9ZZZZ6.840e-543.75Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1016contigD-dudresnayi_contig1016:4611..8021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size611
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1016.211.1prot_D-dudresnayi_contig1016.211.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1016 4611..8021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.4316208-CDS-D-dudresnayi_contig1016:4610..47671622927516.4316208-CDS-D-dudresnayi_contig1016:4610..4767Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 4611..4767 +
1690556788.370203-CDS-D-dudresnayi_contig1016:4610..47671690556788.370203-CDS-D-dudresnayi_contig1016:4610..4767Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 4611..4767 +
1622927516.441626-CDS-D-dudresnayi_contig1016:5868..59311622927516.441626-CDS-D-dudresnayi_contig1016:5868..5931Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 5869..5931 +
1690556788.3785267-CDS-D-dudresnayi_contig1016:5868..59311690556788.3785267-CDS-D-dudresnayi_contig1016:5868..5931Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 5869..5931 +
1622927516.454875-CDS-D-dudresnayi_contig1016:6675..67571622927516.454875-CDS-D-dudresnayi_contig1016:6675..6757Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 6676..6757 +
1690556788.3950365-CDS-D-dudresnayi_contig1016:6675..67571690556788.3950365-CDS-D-dudresnayi_contig1016:6675..6757Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 6676..6757 +
1622927516.4664726-CDS-D-dudresnayi_contig1016:7352..74751622927516.4664726-CDS-D-dudresnayi_contig1016:7352..7475Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 7353..7475 +
1690556788.4088378-CDS-D-dudresnayi_contig1016:7352..74751690556788.4088378-CDS-D-dudresnayi_contig1016:7352..7475Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 7353..7475 +
1622927516.4755208-CDS-D-dudresnayi_contig1016:7837..80211622927516.4755208-CDS-D-dudresnayi_contig1016:7837..8021Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 7838..8021 +
1690556788.4162207-CDS-D-dudresnayi_contig1016:7837..80211690556788.4162207-CDS-D-dudresnayi_contig1016:7837..8021Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1016 7838..8021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1016.211.1

>prot_D-dudresnayi_contig1016.211.1 ID=prot_D-dudresnayi_contig1016.211.1|Name=mRNA_D-dudresnayi_contig1016.211.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=203bp
VSTPPAFLPESNSRASENAASPPQQAEDGSEALDSPSSRLETTPSSRPPM
LTPSGRKQCEVPGCFVQSSYGVKGTGRPRFCTEHKKKGMVGMKNRPCLHP
GCSTRPHYGKSEGRPVYCSTHKKRGMVHLLKEAVLKKEEIARERNVARKA
AREQELLAASAAKKSPTCGKGKTQDTNQAGQGTKGKMQMRTAQGKKITKV
QIT
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mRNA from alignment at D-dudresnayi_contig1016:4611..8021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1016.211.1 ID=mRNA_D-dudresnayi_contig1016.211.1|Name=mRNA_D-dudresnayi_contig1016.211.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3411bp|location=Sequence derived from alignment at D-dudresnayi_contig1016:4611..8021+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGTCCACGCCTCCCGCTTTTTTGCCAGAATCCAACTCCCGGGCCAGTGA
GAATGCTGCCAGTCCTCCTCAGCAGGCTGAAGATGGCTCCGAGGCATTGG
ATTCACCCTCTTCCCGATTAGAGACAACGCCTTCATCTCGGCCCCCAATG
CTGACACGTGAGGCCGAGACTGGAAAGGGACAGTTGTTCTGATACGGTAC
CGTGGCCCGAAAAATTCAGTTGGTGATTGTGCAACCGCGAGATAGTACGT
ATGAGATAGTACGTATGTAGTGCGGGATTGGAGCCGACGACAACCCCGAA
ATTTGAACCTTTCAAGGGGGCGTCACGATTGAAGTTGGGACCTAAACAGA
AGTGCCCTCCTTATGCAGACAAATATGGTGGTTGACTTTACAGCGTTCCC
ACATTTGCGCACGGCACTTTACATATATCTATATTTTTCTGTCCCATTAT
TATCTTCGCCCTATTCTTTCTCTTGCTCCATCTCTCTTCGTAACTCAGAT
CCGGGGCCACATAGTAGGCGCTCCTCCCTCCTTCCCACTACGGTACGTGC
CTATATTTTTATCGCGAGAAGACTGCAGCACTTTCTTCCCTCGTCGACAC
TCATCGAATTGTGCCTACTCACGCTCTCGCGTTTTCCGTGACGGAAGATG
GCACAGAAAAGTGCCACCGGGAATCGAACCCCCAACTTCCGCCAACAGAG
GCAACACCCTAACCATTAGACCACTGCGCTACATATAGACATGGCAAATA
TCAGAGAGCCTTGCCCGTACCAAGACGATGGCATTGCACCCCTTCTGGAT
TATAAGTGATAGAAAAGAACCCACGGTAATTTTTCCATGCCCGTTCGTTT
GTCCCTTTCCAGTTGTGCAACCAAAATATAGCAGGTCGTCATTTGCGTCC
TGGACGTGCCAACGACGATGGCGGTAATGCTGTCCTCGTTTATTTCATTT
TCAAGAGGGGCCCGTTGCAGAATAAACCTGCAAACGTTTCTGCAGTTGGG
GGAGATGTTTCGTTAAAATGAAAGGTCCCCAATATGTTTGTTTTATCATG
AAGAGTACTTGGTGTACCATACACCCTCACGTCACTTGACCTGAGCCCGA
TTCGTAAGGAGTTCAGTGCAACCTCCACCCGCCTCCGTTGCTGGCTTTTG
CGGCACTCCAAAGACCATGAGTATCGTGCCGCTATATTGTTGCCAAACGG
CAATCAAATCAATTTAATCATGCACTTCTCTCGTTTCTGCCTGCCCCGAA
CGCTGCAGCGTCGGGCCGGAAGCAATGCGAGGTCCCTGGCTGCTTTGTCC
AATCCAGCTACGGCGTCAAAGGTGAGTGAAAATCTTAGTGCCCCCAACGT
TACAAAACAAAAACAGAATTTAACATTTTCACATTTCGCATGCATGACAT
GATGACGTTCGTATAATTTTATTAGAAGGCATCAATAGATGGGGGGGAGG
GGGTTGTTCCAACGTGCTTGGAATATTGAACAATGTGCATCCCCATGGAC
GCAGACGCTAGGAAGAAAAAAATACGGCTCTTGCGAAGGGAAATCGATCT
ACGGCGTACACGGGTTTTATGGAGGTAATACTGTCGCGAGTTTGTTGTGT
GCCCAAGCGATAGCCGATGATCTATCAGGTCGTTATGTATCGCCGGCGCC
CGGTGCACAGGTCTCGTATTCCAGTGCATGACATTCGTCAGCGTTGCCCC
TGGGAGATCGAAATGTGCACACAATAGTTCACGGATGACTATATGCTTTA
CATCGTGATGTATTCAGTATCGCATGTACCGAGGGCAGACTGATTGCATT
TGTGCGGTAACTAGGGCGTAATTTGAAGTTGCTCGGGTCCGACGCCGTAT
TGGCTGGTCTGAAAACAGCAGCAATTTGAGTAACGCGGGCCGTTGGAGGC
GCAACAGGACGCGGCTGGCCGTGTGTTTCGTACCGTCAGTGGGCTAGTGT
GCTCTCGTCTTGTTTGCACATTGTGTACCTACCCCATCCACCCTCCCCTG
TCCCTACGCTCTGCCTACCTCCTCCACCGTCCCCGCTCCCGACGCTGTGC
GTCGTATGTGGTCAGGGACTGGTCGACCGAGGTTCTGTACTGAGCATAAG
AAGAAAGGCATGGTGGGAATGAAGAATCGCCCGTGTCTACACCCAGGGTA
GGCACAACACCCCACTGCATTTGTACGGTAAAGTATCACCCAGCCAAAAA
CCATTGAAACACCTATGACCTGGCGCGTCCGGGGTGTAGTTTACGCGTGA
AATGCCTCGTGCTACTATACACCTGTTTAACCTAGTCTCTGCTTGCCATA
TTGTAGTGCTAACAGAGGGTAAAGCTGGGTCTATTCATTCAGGGCGTCTT
TCCGACCATGTCTGTCCCGAGGCAGCCATCGGTAGGGGTAGGGCTAGTAT
GATGGTTTGTTAGCGCGTGACGCCGAGCATTTAAACCTACCAGGCTCGTG
GTAACCCCTGGTTTGTTATAGAATGACAGTGCTTCACACCGAGGGCGTAC
TCATGAAATGCCCACTTCGCCGTGTGCCGATGTTCCCACCATCAAGCAAG
AACCCCTGGGTATTTGAAACAAGTCTTCGTAATACGCTCCATACAAACGG
CCGTTGTTCACCGTATCTGAAAACGCGCCATTGGTTTGCCTTGCGGTCTA
TCCTGACTCGGAATGTGCACCAAGTCTTCACTCTTTGCGTGATACACTTC
GACGCTTAACGCGTACTGGTGCTTCATACTCTCTTGGCACAGATGCAGCA
CTCGACCTCACTACGGTAAGTCGGAGGGACGTCCTGTGTACTGCTCAACG
CACAAGAAACGCGGTATGGTGCACCTGCTAAAGGAAGCAGTGCTCAAGAA
AGAAGAGATTGCACGGTGGGTAGGGTGGGGATAGTGCGCGTGTTTTGTAT
TCCGTACTTTGTCAAGATTGTAGAGCCTTCGCCATCCCACAGTTGGCCAC
ACATACCCGAAGCGGCGCATTTTCCCTAGCGTTATATTACCGACGTGCAT
CTTAAACGAACACGTGTATGCGATCGCCGATTGGTAGTATGAAGGCTGAT
AGCAGAGCGGTGGCGACGCATCATGTCTACCTGCGATATTTTTAGTTGCT
GCGTTCTTGCCTGTCGACGGACCGGAGTGGGTGAAAATGTGCCGATTCGG
GCTGTGGTCTACCAGGATGCCCTCGATATATCTCAAAACGCGCTCTCCTC
GCATGTCACATTATCTGAACCGTGTAGGGAGCGTAACGTCGCTCGGAAGG
CCGCCCGGGAGCAGGAGCTGTTAGCGGCCTCAGCGGCCAAGAAAAGCCCA
ACATGCGGTAAGGGTAAGACGCAAGACACCAACCAGGCGGGTCAAGGCAC
CAAGGGCAAGATGCAAATGCGGACTGCGCAAGGCAAGAAAATAACAAAGG
TACAGATTACG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1016:4611..8021+

>mRNA_D-dudresnayi_contig1016.211.1 ID=mRNA_D-dudresnayi_contig1016.211.1|Name=mRNA_D-dudresnayi_contig1016.211.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at D-dudresnayi_contig1016:4611..8021+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGTCCACGCCTCCCGCTTTTTTGCCAGAATCCAACTCCCGGGCCAGTGA
GAATGCTGCCAGTCCTCCTCAGCAGGCTGAAGATGGCTCCGAGGCATTGG
ATTCACCCTCTTCCCGATTAGAGACAACGCCTTCATCTCGGCCCCCAATG
CTGACACGTGTCCACGCCTCCCGCTTTTTTGCCAGAATCCAACTCCCGGG
CCAGTGAGAATGCTGCCAGTCCTCCTCAGCAGGCTGAAGATGGCTCCGAG
GCATTGGATTCACCCTCTTCCCGATTAGAGACAACGCCTTCATCTCGGCC
CCCAATGCTGACACCGTCGGGCCGGAAGCAATGCGAGGTCCCTGGCTGCT
TTGTCCAATCCAGCTACGGCGTCAAAGCGTCGGGCCGGAAGCAATGCGAG
GTCCCTGGCTGCTTTGTCCAATCCAGCTACGGCGTCAAAGGGACTGGTCG
ACCGAGGTTCTGTACTGAGCATAAGAAGAAAGGCATGGTGGGAATGAAGA
ATCGCCCGTGTCTACACCCAGGGGACTGGTCGACCGAGGTTCTGTACTGA
GCATAAGAAGAAAGGCATGGTGGGAATGAAGAATCGCCCGTGTCTACACC
CAGGATGCAGCACTCGACCTCACTACGGTAAGTCGGAGGGACGTCCTGTG
TACTGCTCAACGCACAAGAAACGCGGTATGGTGCACCTGCTAAAGGAAGC
AGTGCTCAAGAAAGAAGAGATTGCACGATGCAGCACTCGACCTCACTACG
GTAAGTCGGAGGGACGTCCTGTGTACTGCTCAACGCACAAGAAACGCGGT
ATGGTGCACCTGCTAAAGGAAGCAGTGCTCAAGAAAGAAGAGATTGCACG
GGAGCGTAACGTCGCTCGGAAGGCCGCCCGGGAGCAGGAGCTGTTAGCGG
CCTCAGCGGCCAAGAAAAGCCCAACATGCGGTAAGGGTAAGACGCAAGAC
ACCAACCAGGCGGGTCAAGGCACCAAGGGCAAGATGCAAATGCGGACTGC
GCAAGGCAAGAAAATAACAAAGGTACAGATTACGGGAGCGTAACGTCGCT
CGGAAGGCCGCCCGGGAGCAGGAGCTGTTAGCGGCCTCAGCGGCCAAGAA
AAGCCCAACATGCGGTAAGGGTAAGACGCAAGACACCAACCAGGCGGGTC
AAGGCACCAAGGGCAAGATGCAAATGCGGACTGCGCAAGGCAAGAAAATA
ACAAAGGTACAGATTACG
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