mRNA_D-dudresnayi_contig10150.204.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10150.204.1
Unique NamemRNA_D-dudresnayi_contig10150.204.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10150.204.1 vs. uniprot
Match: A0A6H5KRS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 3.300e-50
Identity = 98/133 (73.68%), Postives = 110/133 (82.71%), Query Frame = 1 
Query:   28 AGEVSMATTAVAGEAASAGPASPMN----PAIGGLGYPGAFVQYQQDEILKIVSTLSQADVAVVPGVADIRAHALVFESEANLGLLMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGSYMYGEGHEQNQQ 414
            AG  S       GEA ++ PA+ +     PA GGLGYPGAF+QYQ D+ILKIVSTLSQ+DVAVVPGVADIR HAL FE++ANLGL+MRQRSVSIDECREQLRKGRPVHREGVIAGAVDYG+YMYGEGH+  QQ
Sbjct:  504 AGAASTDDMVTTGEADASSPAADVPEAPAPAPGGLGYPGAFIQYQPDDILKIVSTLSQSDVAVVPGVADIREHALAFEADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGEGHDPQQQ 636
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BLAST of mRNA_D-dudresnayi_contig10150.204.1 vs. uniprot
Match: D8LL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 5.150e-50
Identity = 90/106 (84.91%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:  103 PAIGGLGYPGAFVQYQQDEILKIVSTLSQADVAVVPGVADIRAHALVFESEANLGLLMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGSYMYGEGHEQNQQGG 420
            PA GGLGYPGAF+QYQ D+ILKIVSTLSQ+DVAVVPGVADIR H+L FE++ANLGL+MRQRSVSIDECREQLRKGRPVHREGVIAGAVDYG+YMYGEGH+  QQ G
Sbjct:  396 PAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVAVVPGVADIREHSLAFEADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGEGHDPQQQAG 501
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BLAST of mRNA_D-dudresnayi_contig10150.204.1 vs. uniprot
Match: A0A836CN94_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN94_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.470e-18
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:  121 GYPGAFVQYQQDEILKIVSTLSQADVAVVPGVADIRAHALVFESEANLGLLMRQRS-------------VSIDECREQLRKGRPVHREGVI-AGAVDYGSYMYGEG 396
            GY G F +Y+ +EIL+IV  +S  DVAV+ G  D   H L  E++A+ G+L+RQ S             VSIDE REQLR+GRPVHRE ++ AGAVDY + M+G+G
Sbjct:  484 GYSGPFTKYKPEEILRIVQGMSADDVAVIGGGVDPLEHTLALEAKADPGVLLRQHSXXXXXXXXXXXXXVSIDEVREQLRRGRPVHREAMLPAGAVDYSTMMFGDG 589
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BLAST of mRNA_D-dudresnayi_contig10150.204.1 vs. uniprot
Match: A0A7S3XW85_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW85_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 8.050e-16
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:  121 GYPGAFVQYQQDEILKIVSTLSQADVAVVPGVADIRAHALVFESEANLGLLMRQRSVSIDECREQLRKGRPVHREGVIAGAVDY 372
            GY G + +Y  +EIL++VS ++ AD+   PGV D  AH +   +  NLGLL  QR+VSIDE RE L++G+P+ RE V+ G VDY
Sbjct:   46 GYQGPYTKYDPEEILQLVSAMADADIYAPPGV-DPAAHEVAMVAAPNLGLLRNQRTVSIDETREVLKQGKPLIREAVMQGEVDY 128
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BLAST of mRNA_D-dudresnayi_contig10150.204.1 vs. uniprot
Match: A0A812SIG5_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SIG5_SYMMI)

HSP 1 Score: 63.9 bits (154), Expect = 8.250e-10
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:  259 NLGLLMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGSYMYGE 393
            N  LL+RQR+ SIDE REQ+++GRPV RE VIAG VDYGS  YGE
Sbjct:    6 NTDLLLRQRTFSIDETREQMQQGRPVQREAVIAGDVDYGSLFYGE 50
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BLAST of mRNA_D-dudresnayi_contig10150.204.1 vs. uniprot
Match: A0A836CKL7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.520e-9
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:  253 EANLGLLMRQRSVSIDECREQLRKGRPVHREGVIA-GAVDYGSYMYGEGH 399
            +A+ GLL RQRSVSIDE REQLR+G+PVHRE  +A GA DY + M+G+ H
Sbjct:    4 DADDGLLQRQRSVSIDEVREQLRQGKPVHREATVAAGAQDYCTLMFGDHH 53
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10150.204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KRS0_9PHAE3.300e-5073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL21_ECTSI5.150e-5084.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CN94_9STRA5.470e-1849.06HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S3XW85_HETAK8.050e-1648.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A812SIG5_SYMMI8.250e-1068.89Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A836CKL7_9STRA1.520e-964.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10150contigD-dudresnayi_contig10150:5666..6203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue3.3e-44
Seed eggNOG ortholog2880.D8LL21
KEGG koko:K15322,ko:K18757,ko:K18763
EggNOG free text desc.positive regulation of translation
EggNOG OGsKOG2591@1,KOG2591@2759
EC3.1.27.9
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.7343524-CDS-D-dudresnayi_contig10150:5665..62021622927515.7343524-CDS-D-dudresnayi_contig10150:5665..6202Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10150 5666..6202 +
1690556788.0617065-CDS-D-dudresnayi_contig10150:5665..62021690556788.0617065-CDS-D-dudresnayi_contig10150:5665..6202Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10150 5666..6202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10150.204.1prot_D-dudresnayi_contig10150.204.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10150 5666..6202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10150.204.1

>prot_D-dudresnayi_contig10150.204.1 ID=prot_D-dudresnayi_contig10150.204.1|Name=mRNA_D-dudresnayi_contig10150.204.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=179bp
AAGSRGLEDAGEVSMATTAVAGEAASAGPASPMNPAIGGLGYPGAFVQYQ
QDEILKIVSTLSQADVAVVPGVADIRAHALVFESEANLGLLMRQRSVSID
ECREQLRKGRPVHREGVIAGAVDYGSYMYGEGHEQNQQGGHSGSSTSGGP
PRGAHGNGSDGRSSQGSSAGGEKKKGDRG
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mRNA from alignment at D-dudresnayi_contig10150:5666..6203+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10150.204.1 ID=mRNA_D-dudresnayi_contig10150.204.1|Name=mRNA_D-dudresnayi_contig10150.204.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at D-dudresnayi_contig10150:5666..6203+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCAGCGGGGTCGAGAGGACTAGAGGACGCGGGCGAGGTTTCCATGGCTAC
TACCGCCGTCGCCGGAGAAGCGGCGTCGGCAGGGCCAGCATCACCGATGA
ATCCAGCGATCGGAGGGCTTGGATATCCGGGTGCGTTCGTCCAGTACCAG
CAGGACGAGATTCTGAAGATTGTGTCGACGCTGTCTCAGGCGGACGTCGC
TGTCGTGCCCGGGGTGGCCGACATCCGTGCGCACGCGCTCGTGTTCGAGA
GTGAGGCGAACTTGGGGCTGCTGATGCGCCAGCGATCGGTGTCGATCGAC
GAGTGCAGGGAGCAGCTCCGCAAAGGGAGGCCGGTACACCGTGAGGGCGT
CATCGCCGGTGCCGTTGACTACGGCAGTTACATGTACGGAGAAGGTCACG
AGCAGAATCAGCAGGGCGGGCACTCGGGGTCTTCGACCTCCGGCGGCCCC
CCACGAGGGGCTCACGGGAACGGGAGCGATGGCCGCAGCAGCCAGGGCAG
TAGCGCAGGAGGAGAAAAGAAGAAGGGGGATAGGGGTC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10150:5666..6203+

>mRNA_D-dudresnayi_contig10150.204.1 ID=mRNA_D-dudresnayi_contig10150.204.1|Name=mRNA_D-dudresnayi_contig10150.204.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at D-dudresnayi_contig10150:5666..6203+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCAGCGGGGTCGAGAGGACTAGAGGACGCGGGCGAGGTTTCCATGGCTAC
TACCGCCGTCGCCGGAGAAGCGGCGTCGGCAGGGCCAGCATCACCGATGA
ATCCAGCGATCGGAGGGCTTGGATATCCGGGTGCGTTCGTCCAGTACCAG
CAGGACGAGATTCTGAAGATTGTGTCGACGCTGTCTCAGGCGGACGTCGC
TGTCGTGCCCGGGGTGGCCGACATCCGTGCGCACGCGCTCGTGTTCGAGA
GTGAGGCGAACTTGGGGCTGCTGATGCGCCAGCGATCGGTGTCGATCGAC
GAGTGCAGGGAGCAGCTCCGCAAAGGGAGGCCGGTACACCGTGAGGGCGT
CATCGCCGGTGCCGTTGACTACGGCAGTTACATGTACGGAGAAGGTCACG
AGCAGAATCAGCAGGGCGGGCACTCGGGGTCTTCGACCTCCGGCGGCCCC
CCACGAGGGGCTCACGGGAACGGGAGCGATGGCCGCAGCAGCCAGGGCAG
TAGCGCAGGAGGAGAAAAGAAGAAGGGGGATAGGGGTGCAGCGGGGTCGA
GAGGACTAGAGGACGCGGGCGAGGTTTCCATGGCTACTACCGCCGTCGCC
GGAGAAGCGGCGTCGGCAGGGCCAGCATCACCGATGAATCCAGCGATCGG
AGGGCTTGGATATCCGGGTGCGTTCGTCCAGTACCAGCAGGACGAGATTC
TGAAGATTGTGTCGACGCTGTCTCAGGCGGACGTCGCTGTCGTGCCCGGG
GTGGCCGACATCCGTGCGCACGCGCTCGTGTTCGAGAGTGAGGCGAACTT
GGGGCTGCTGATGCGCCAGCGATCGGTGTCGATCGACGAGTGCAGGGAGC
AGCTCCGCAAAGGGAGGCCGGTACACCGTGAGGGCGTCATCGCCGGTGCC
GTTGACTACGGCAGTTACATGTACGGAGAAGGTCACGAGCAGAATCAGCA
GGGCGGGCACTCGGGGTCTTCGACCTCCGGCGGCCCCCCACGAGGGGCTC
ACGGGAACGGGAGCGATGGCCGCAGCAGCCAGGGCAGTAGCGCAGGAGGA
GAAAAGAAGAAGGGGGATAGGGGT
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