mRNA_D-dudresnayi_contig10147.197.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10147.197.1
Unique NamemRNA_D-dudresnayi_contig10147.197.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: M2VYV9_GALSU (50S ribosomal protein L31, chloroplastic n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VYV9_GALSU)

HSP 1 Score: 274 bits (700), Expect = 5.170e-91
Identity = 137/201 (68.16%), Postives = 160/201 (79.60%), Query Frame = 1 
Query:   34 MPKKNIHPKWFDETKVYYDGQLIMIVGSTKPELHVDIWSGNHPFYTGSQRIIDTEGRVERFLKKYKIENNIS*K*KIIKDMPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKK 636
            MPK NIHPKW+ E +VY +G+LI  +GSTKP+L+VD+WSGNHPF+T SQRIIDTE        KY+I    +        MPTIQQLIR  RK I+   K PAL +CPQ+RGVCTRV+T TPKKPNSA+RKVARVRLTSG+E+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RG LD+ GVK+R+  RSKYG KK
Sbjct:    1 MPKSNIHPKWYPEAEVYCEGKLIFKIGSTKPKLNVDVWSGNHPFFTDSQRIIDTE-------VKYQIHTQYN--------MPTIQQLIREARKDIRKNIKCPALNACPQKRGVCTRVYTNTPKKPNSALRKVARVRLTSGYEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDSAGVKNRKTSRSKYGAKK 186
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: A0A6P0NH41_9CYAN (30S ribosomal protein S12 n=53 Tax=cellular organisms TaxID=131567 RepID=A0A6P0NH41_9CYAN)

HSP 1 Score: 233 bits (593), Expect = 1.110e-75
Identity = 117/124 (94.35%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKPIK 645
            MPTIQQLIRVRR KI+ R KSPALK+CPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYG+KKP+K
Sbjct:    1 MPTIQQLIRVRRTKIKDRGKSPALKNCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGVKKPVK 124
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: A0A7S6U9Z3_9STRA (30S ribosomal protein S12, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z3_9STRA)

HSP 1 Score: 223 bits (569), Expect = 4.960e-72
Identity = 110/124 (88.71%), Postives = 118/124 (95.16%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKPIK 645
            MPTIQQL+R  RKK+Q RTKSPALK+CPQRRGVCTRV+TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYH++RGTLD++GVKDRRQ RSKYG KKP K
Sbjct:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRRSKYGTKKPRK 124
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: A0A8E5XRI9_9PHAE (30S ribosomal protein S12, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI9_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 2.860e-71
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKP 639
            MPTIQQLIRV RKKIQPRTKSPALKSCPQRRGVCTRV+TI PKKPNSA+RKVARVRLTSGFEVTAYIPG+ H LQEHSVVLLRGGRVKDLPGVRYHIIRGTLD+ GVK+RRQGRSKYG+KKP
Sbjct:    1 MPTIQQLIRVPRKKIQPRTKSPALKSCPQRRGVCTRVYTIAPKKPNSAVRKVARVRLTSGFEVTAYIPGVDHTLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDSGGVKNRRQGRSKYGVKKP 122
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: K9TNW7_9CYAN (30S ribosomal protein S12 n=68 Tax=cellular organisms TaxID=131567 RepID=K9TNW7_9CYAN)

HSP 1 Score: 220 bits (560), Expect = 1.160e-70
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKP 639
            MPTIQQLIR  R+KI+ +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDRRQGRSKYG K+P
Sbjct:    1 MPTIQQLIRTERQKIEKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: A0A3G1IVK8_9EUKA (Ribosomal protein S12 n=3 Tax=Glaucocystophyceae TaxID=38254 RepID=A0A3G1IVK8_9EUKA)

HSP 1 Score: 218 bits (555), Expect = 6.680e-70
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKP 639
            MPTIQQLIR++RKKI  +TKSPALK CPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHIIRG LD  GVKDRRQGRSKYG KKP
Sbjct:    1 MPTIQQLIRLKRKKIDKKTKSPALKGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIIRGALDAAGVKDRRQGRSKYGTKKP 122
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: K9S9M0_9CYAN (30S ribosomal protein S12 n=17 Tax=cellular organisms TaxID=131567 RepID=K9S9M0_9CYAN)

HSP 1 Score: 217 bits (552), Expect = 1.910e-69
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKP 639
            MPTIQQLIR  R+K + +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDRRQGRSKYG K+P
Sbjct:    1 MPTIQQLIRSERQKAKKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: A0A385KE48_9EMBR (30S ribosomal protein S12, chloroplastic n=6 Tax=Embryophyta TaxID=3193 RepID=A0A385KE48_9EMBR)

HSP 1 Score: 216 bits (549), Expect = 5.280e-69
Identity = 105/122 (86.07%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKP 639
            MPTIQQLIR +RK ++ RTKSPAL+ CPQRRGVCTRV+T TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDTVGVKDR+QGRSKYG+KKP
Sbjct:    1 MPTIQQLIRNQRKLVKNRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: A0A0P8BUW8_9CYAN (30S ribosomal protein S12 n=11 Tax=cellular organisms TaxID=131567 RepID=A0A0P8BUW8_9CYAN)

HSP 1 Score: 216 bits (549), Expect = 5.460e-69
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKP 639
            MPTIQQL+R  RKK   +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+LRGGRVKDLPGVRYHI+RGTLDT GVKDRRQ RSKYG K+P
Sbjct:    1 MPTIQQLVRSERKKAHKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMLRGGRVKDLPGVRYHIVRGTLDTAGVKDRRQSRSKYGAKRP 122
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BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Match: RR12_ANTAG (30S ribosomal protein S12, chloroplastic n=5 Tax=Embryophyta TaxID=3193 RepID=RR12_ANTAG)

HSP 1 Score: 215 bits (548), Expect = 7.490e-69
Identity = 104/122 (85.25%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:  274 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGMKKP 639
            MPTIQQLIR +R+ ++ RTKSPAL+ CPQRRGVCTRV+T TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDTVGVKDR+QGRSKYG+KKP
Sbjct:    1 MPTIQQLIRSKRQLVKSRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10147.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M2VYV9_GALSU5.170e-9168.1650S ribosomal protein L31, chloroplastic n=2 Tax=G... [more]
A0A6P0NH41_9CYAN1.110e-7594.3530S ribosomal protein S12 n=53 Tax=cellular organi... [more]
A0A7S6U9Z3_9STRA4.960e-7288.7130S ribosomal protein S12, chloroplastic n=1 Tax=S... [more]
A0A8E5XRI9_9PHAE2.860e-7190.9830S ribosomal protein S12, chloroplastic n=1 Tax=I... [more]
K9TNW7_9CYAN1.160e-7088.5230S ribosomal protein S12 n=68 Tax=cellular organi... [more]
A0A3G1IVK8_9EUKA6.680e-7088.52Ribosomal protein S12 n=3 Tax=Glaucocystophyceae T... [more]
K9S9M0_9CYAN1.910e-6987.7030S ribosomal protein S12 n=17 Tax=cellular organi... [more]
A0A385KE48_9EMBR5.280e-6986.0730S ribosomal protein S12, chloroplastic n=6 Tax=E... [more]
A0A0P8BUW8_9CYAN5.460e-6986.8930S ribosomal protein S12 n=11 Tax=cellular organi... [more]
RR12_ANTAG7.490e-6985.2530S ribosomal protein S12, chloroplastic n=5 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10147contigD-dudresnayi_contig10147:3005..3652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue3.8e-63
Seed eggNOG ortholog2880.D1J727
Preferred namerps12
KEGG koko:K02950,ko:K02992
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010467,GO:0019538,GO:0031976,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1750@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size648
Cds size375
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.3598912-UTR-D-dudresnayi_contig10147:3004..32771622927515.3598912-UTR-D-dudresnayi_contig10147:3004..3277Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10147 3005..3277 +
1690556787.8841054-UTR-D-dudresnayi_contig10147:3004..32771690556787.8841054-UTR-D-dudresnayi_contig10147:3004..3277Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10147 3005..3277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.3731709-CDS-D-dudresnayi_contig10147:3277..36521622927515.3731709-CDS-D-dudresnayi_contig10147:3277..3652Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10147 3278..3652 +
1690556787.8986185-CDS-D-dudresnayi_contig10147:3277..36521690556787.8986185-CDS-D-dudresnayi_contig10147:3277..3652Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10147 3278..3652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10147.197.1prot_D-dudresnayi_contig10147.197.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10147 3278..3652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10147.197.1

>prot_D-dudresnayi_contig10147.197.1 ID=prot_D-dudresnayi_contig10147.197.1|Name=mRNA_D-dudresnayi_contig10147.197.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=125bp
MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIR
KVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRG
TLDTVGVKDRRQGRSKYGMKKPIK*
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mRNA from alignment at D-dudresnayi_contig10147:3005..3652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10147.197.1 ID=mRNA_D-dudresnayi_contig10147.197.1|Name=mRNA_D-dudresnayi_contig10147.197.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at D-dudresnayi_contig10147:3005..3652+ (Desmarestia dudresnayi DdudBR16 monoicous)
TAAACATATTATATATACTTAAACATTATCTATATGCCAAAAAAGAATAT
ACATCCAAAATGGTTTGACGAGACTAAAGTTTATTACGATGGGCAACTTA
TTATGATTGTGGGATCAACAAAACCTGAATTGCATGTTGATATCTGGTCT
GGTAATCACCCTTTCTATACAGGTTCACAACGAATAATTGATACTGAAGG
GCGGGTAGAAAGATTTTTAAAAAAATATAAAATTGAGAATAATATCAGTT
AAAAATAAAAAATTATTAAAGATATGCCAACTATACAACAATTAATTCGA
GTACGCCGTAAAAAAATTCAACCCCGAACAAAATCACCTGCTTTAAAAAG
TTGTCCTCAACGAAGAGGTGTATGTACACGTGTTCATACAATTACACCGA
AAAAACCTAATTCAGCAATAAGAAAAGTAGCTCGTGTTAGATTAACCTCT
GGCTTTGAAGTTACTGCTTATATACCTGGGATTGGTCATAATTTGCAAGA
ACATTCAGTAGTTCTACTTCGTGGTGGTCGTGTAAAAGATTTACCAGGAG
TACGTTATCATATTATTAGAGGAACTCTTGATACAGTTGGGGTAAAAGAT
CGACGCCAAGGGCGTTCAAAATATGGAATGAAAAAACCAATAAAATAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10147:3005..3652+

>mRNA_D-dudresnayi_contig10147.197.1 ID=mRNA_D-dudresnayi_contig10147.197.1|Name=mRNA_D-dudresnayi_contig10147.197.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at D-dudresnayi_contig10147:3005..3652+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCAACTATACAACAATTAATTCGAGTACGCCGTAAAAAAATTCAACC
CCGAACAAAATCACCTGCTTTAAAAAGTTGTCCTCAACGAAGAGGTGTAT
GTACACGTGTTCATACAATTACACCGAAAAAACCTAATTCAGCAATAAGA
AAAGTAGCTCGTGTTAGATTAACCTCTGGCTTTGAAGTTACTGCTTATAT
ACCTGGGATTGGTCATAATTTGCAAGAACATTCAGTAGTTCTACTTCGTG
GTGGTCGTGTAAAAGATTTACCAGGAGTACGTTATCATATTATTAGAGGA
ACTCTTGATACAGTTGGGGTAAAAGATCGACGCCAAGGGCGTTCAAAATA
TGGAATGAAAAAACCAATAAAATAAATGCCAACTATACAACAATTAATTC
GAGTACGCCGTAAAAAAATTCAACCCCGAACAAAATCACCTGCTTTAAAA
AGTTGTCCTCAACGAAGAGGTGTATGTACACGTGTTCATACAATTACACC
GAAAAAACCTAATTCAGCAATAAGAAAAGTAGCTCGTGTTAGATTAACCT
CTGGCTTTGAAGTTACTGCTTATATACCTGGGATTGGTCATAATTTGCAA
GAACATTCAGTAGTTCTACTTCGTGGTGGTCGTGTAAAAGATTTACCAGG
AGTACGTTATCATATTATTAGAGGAACTCTTGATACAGTTGGGGTAAAAG
ATCGACGCCAAGGGCGTTCAAAATATGGAATGAAAAAACCAATAAAATAA
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