mRNA_D-dudresnayi_contig10147.194.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10147.194.1
Unique NamemRNA_D-dudresnayi_contig10147.194.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A127MG98_9SPHN (DNA repair protein RadA n=12 Tax=Sphingomonadales TaxID=204457 RepID=A0A127MG98_9SPHN)

HSP 1 Score: 522 bits (1345), Expect = 7.410e-184
Identity = 269/289 (93.08%), Postives = 280/289 (96.89%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGDTVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPDFVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            C EWNTLVEEAG+TVFA+KHNLQTGGREVRLVGLDSEI LP+R+KTGI EFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSA+LA AG SVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTL +DAPDFVVIDSIQTMHSDLIEGAPGTVSQVRASAQE+IKFAKEHGTM+MLVGHVTKDG+IAGPRVLEHMVDTVMSFEGERSHQYRILR+IKNRFGGTDEIGVFAMEE GL EV NPSALFLTDRSEEVTGATVFPA+EGTRPVLVEIQALTVRL
Sbjct:   27 CSEWNTLVEEAGETVFASKHNLQTGGREVRLVGLDSEIALPDRRKTGIAEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSARLAEAGLSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLGRDAPDFVVIDSIQTMHSDLIEGAPGTVSQVRASAQEIIKFAKEHGTMVMLVGHVTKDGSIAGPRVLEHMVDTVMSFEGERSHQYRILRSIKNRFGGTDEIGVFAMEEKGLTEVANPSALFLTDRSEEVTGATVFPAMEGTRPVLVEIQALTVRL 315
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BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A840HVC3_9SPHN (DNA repair protein RadA n=2 Tax=Rhizorhapis TaxID=1649487 RepID=A0A840HVC3_9SPHN)

HSP 1 Score: 464 bits (1193), Expect = 9.710e-161
Identity = 239/290 (82.41%), Postives = 265/290 (91.38%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGDTVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPD-FVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            CGEWN+L+EEAG+TVF+A+H+LQ GGR V LV LDS++ LP R+ TGI EFDRA+GGGLVAGSATL+GGDPGIGKSTLLLQ +A++A  G +VAYISGEEAADQVRLRA+RLGLGKAPV+LASATSVRDILTTL + AP  F+VIDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAKE GT ++LVGHVTKDG+IAGPRVLEHMVDTV++FEGERSHQYRILRAIKNRFGGTDEIGVF+ME  GL EV NPSALFLT R E VTGATVFPALEGTRPVLVEIQALTVRL
Sbjct:   27 CGEWNSLIEEAGETVFSARHSLQAGGRAVNLVALDSDVALPAREPTGIAEFDRALGGGLVAGSATLIGGDPGIGKSTLLLQAAARMAARGLAVAYISGEEAADQVRLRAQRLGLGKAPVQLASATSVRDILTTLSQGAPPAFLVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKERGTALVLVGHVTKDGSIAGPRVLEHMVDTVLNFEGERSHQYRILRAIKNRFGGTDEIGVFSMESEGLSEVANPSALFLTHRDESVTGATVFPALEGTRPVLVEIQALTVRL 316
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BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A371BJI9_9SPHN (DNA repair protein RadA n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A371BJI9_9SPHN)

HSP 1 Score: 459 bits (1182), Expect = 4.400e-159
Identity = 238/290 (82.07%), Postives = 259/290 (89.31%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGDTVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPD-FVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            CG WN+LVEEAG TVF  KH+LQ GGR+V LVGLDS+IKLP+R  TGI EFDRA+GGGLVAGSATL+GGDPGIGKSTLLLQ +A LA  G  VAYISGEEA DQVRLRARRLGLG APV+LA+ATSVRDILTT+    P   ++IDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAKE GT +MLVGHVTKDG+IAGPRVLEHMVDTV++FEGERSHQYRILRA KNRFGGTDEIGVFAM + GL EV NPSALFLTDR+E+VTGATVFPALEGTRPVLVEIQALTVRL
Sbjct:   27 CGAWNSLVEEAGATVFEMKHHLQNGGRDVGLVGLDSDIKLPDRASTGISEFDRALGGGLVAGSATLLGGDPGIGKSTLLLQTAANLARRGLDVAYISGEEAVDQVRLRARRLGLGDAPVQLAAATSVRDILTTMGSTKPPALLIIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKERGTALMLVGHVTKDGSIAGPRVLEHMVDTVLAFEGERSHQYRILRANKNRFGGTDEIGVFAMADSGLAEVGNPSALFLTDRAEQVTGATVFPALEGTRPVLVEIQALTVRL 316
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BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A258RS76_9SPHN (DNA repair protein RadA n=8 Tax=Sphingomonadales TaxID=204457 RepID=A0A258RS76_9SPHN)

HSP 1 Score: 459 bits (1181), Expect = 6.240e-159
Identity = 240/290 (82.76%), Postives = 258/290 (88.97%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGDTVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPD-FVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            CGEWNTL EEA  TVF  KH+LQ+GGR V L GL+S+IKLPER  TGI EFDRA+GGGLV GSATL+GGDPGIGKSTLLLQ +A LA  G +VAYISGEEA DQVRLRARRLGLG APV+LA+ATSVRDILTT+ + AP   +VIDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAKE GT +MLVGHVTKDG IAGPRVLEHMVDTV+SFEGERSHQYRILRA KNRFGGTDEIGVFAM E GL EV NPSALFLTDR+E+VTGATVFPALEGTRPVLVEIQALTVRL
Sbjct:   27 CGEWNTLAEEASATVFELKHHLQSGGRAVELSGLNSDIKLPERASTGISEFDRALGGGLVPGSATLLGGDPGIGKSTLLLQAAANLARRGLAVAYISGEEAVDQVRLRARRLGLGDAPVQLAAATSVRDILTTMAQGAPPALLVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKERGTALMLVGHVTKDGTIAGPRVLEHMVDTVLSFEGERSHQYRILRASKNRFGGTDEIGVFAMVEEGLTEVGNPSALFLTDRAEQVTGATVFPALEGTRPVLVEIQALTVRL 316
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BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: UPI001BAF954E (DNA repair protein RadA n=2 Tax=Sphingobium phenoxybenzoativorans TaxID=1592790 RepID=UPI001BAF954E)

HSP 1 Score: 459 bits (1181), Expect = 6.450e-159
Identity = 239/290 (82.41%), Postives = 261/290 (90.00%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGDTVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPD-FVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            CGEWN+LVEEA +TVF+AKH+L  GGR + L+GLDS++ LP R+ TGI EFDRA+GGGLV+GSATL+GGDPGIGKSTLLLQ SA++A  G SVAYISGEEAADQVRLRARRLGLG APV+LASATSVRDILTTL    P   VVIDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAKE GT ++LVGHVTKDG+IAGPRVLEHMVDTV+SFEGERSHQYRILRAIKNRFGGTDEIGVF+M E GL EV NPSALFLT+R E VTGATVFPALEGTRPVLVEIQALTVRL
Sbjct:   27 CGEWNSLVEEAAETVFSAKHDLHGGGRAISLIGLDSDVALPPREMTGIAEFDRALGGGLVSGSATLIGGDPGIGKSTLLLQASARMAMRGLSVAYISGEEAADQVRLRARRLGLGNAPVQLASATSVRDILTTLANGPPPALVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKERGTAVVLVGHVTKDGSIAGPRVLEHMVDTVLSFEGERSHQYRILRAIKNRFGGTDEIGVFSMAEEGLEEVANPSALFLTNRDETVTGATVFPALEGTRPVLVEIQALTVRL 316
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BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A7W9EF81_9SPHN (DNA repair protein RadA n=1 Tax=Sphingobium boeckii TaxID=1082345 RepID=A0A7W9EF81_9SPHN)

HSP 1 Score: 458 bits (1178), Expect = 1.970e-158
Identity = 242/292 (82.88%), Postives = 258/292 (88.36%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGDTV--FAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAP-DFVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            C EWNT+VEE G  V  FAAKHNLQ+GGR V LVGLDS+I LPER  TGI E DRA+GGG V GSATL+GGDPGIGKSTLLLQ +AKLA AG SVAY+SGEEAADQVRLRARRLGLG APV+LA+ATSVRDILTT    AP D +VIDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAKE GT ++LVGHVTKDG+IAGPRVLEHMVDTV+SFEGERSHQYRILRAIKNRFGGTDEIGVFAM E GL EV NPSALFLT R E VTG+TVFPALEGTRPVLVEIQALTVRL
Sbjct:   27 CAEWNTMVEEGGQVVTPFAAKHNLQSGGRAVSLVGLDSDIALPERAATGIKELDRALGGGFVEGSATLIGGDPGIGKSTLLLQAAAKLALAGKSVAYVSGEEAADQVRLRARRLGLGNAPVQLAAATSVRDILTTFGNGAPPDLLVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKERGTAVVLVGHVTKDGSIAGPRVLEHMVDTVLSFEGERSHQYRILRAIKNRFGGTDEIGVFAMVEEGLTEVSNPSALFLTSRDENVTGSTVFPALEGTRPVLVEIQALTVRL 318
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BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A1G6WSS7_9SPHN (DNA repair protein RadA n=1 Tax=Sphingomonas sp. YR710 TaxID=1882773 RepID=A0A1G6WSS7_9SPHN)

HSP 1 Score: 457 bits (1177), Expect = 2.610e-158
Identity = 239/290 (82.41%), Postives = 261/290 (90.00%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGD-TVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPDFVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            CGEWN LVEEA + TVF+A+H+L+TGGR + LVGLD+EI LP+R  TGI EFDRA+GGGLV GSATL+GGDPGIGKSTLLLQ +AK+A  G SVAYISGEEAADQVRLRARRLGLG +PVKLASATSVRDILTTL +DAP  VVIDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAKE GT ++LVGHVTKDG IAGPRVLEHMVDTV+SFEGERSHQYRILRA+KNRFGGTDEIGVFAM E GL EV NPSALFLT R E ++GATVFPA+EGTRPVLVEIQAL VRL
Sbjct:   27 CGEWNALVEEASNVTVFSARHDLRTGGRTIALVGLDAEIPLPKRSTTGIAEFDRALGGGLVPGSATLIGGDPGIGKSTLLLQAAAKMALDGMSVAYISGEEAADQVRLRARRLGLGHSPVKLASATSVRDILTTLERDAPAMVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKERGTAVVLVGHVTKDGAIAGPRVLEHMVDTVLSFEGERSHQYRILRAVKNRFGGTDEIGVFAMAEGGLEEVANPSALFLTARGEGMSGATVFPAMEGTRPVLVEIQALVVRL 316
[Close]
BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A8J7ISJ6_9SPHN (DNA repair protein RadA n=2 Tax=Novosphingopyxis TaxID=2709686 RepID=A0A8J7ISJ6_9SPHN)

HSP 1 Score: 456 bits (1172), Expect = 1.400e-157
Identity = 239/290 (82.41%), Postives = 259/290 (89.31%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGDTVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRK-DAPDFVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            C EWN+LVEEAG+TVFA KH+LQ GGR V L  LDS++ LP R  TGI EFD A+GGG+VAGSA L+GGDPGIGKSTLLLQ +A+LA +G SVAYISGEEAADQVRLRARRLGLGKAPV+LASATSVRDILTTL + + P  ++IDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAK  GT + LVGHVTKDGNIAGPRVLEHMVD V+SFEGERSHQYRILRAIKNRFGGTDEIGVFAMEE GL EV NPSALFLTDRSE +TGATVFPALEGTRPVLVEIQALTVRL
Sbjct:   27 CKEWNSLVEEAGETVFAQKHDLQRGGRRVDLSPLDSDVPLPARVSTGIAEFDLALGGGIVAGSAVLLGGDPGIGKSTLLLQAAARLAYSGLSVAYISGEEAADQVRLRARRLGLGKAPVQLASATSVRDILTTLGEGEPPALLIIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKTRGTALFLVGHVTKDGNIAGPRVLEHMVDCVLSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEEGLSEVANPSALFLTDRSEALTGATVFPALEGTRPVLVEIQALTVRL 316
[Close]
BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A2L0AAN5_9SPHN (DNA repair protein RadA n=3 Tax=Sphingobium TaxID=165695 RepID=A0A2L0AAN5_9SPHN)

HSP 1 Score: 455 bits (1171), Expect = 2.130e-157
Identity = 236/290 (81.38%), Postives = 258/290 (88.97%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGDTVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPD-FVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            CGEWN+L EEAGDTVFAA+H+LQTGGR +++V LDS I LP R  TGI EFDRA+GGGLV GSATL+GGDPGIGKSTLLLQ +A++A  G  VAYISGEEAADQVRLRA+RLGLG APV+LASATSVRDILTTL    P   +VIDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAK+ GT ++LVGHVTKDG+IAGPRVLEHMVDTV+SFEGERSHQYRILRAIKNRFGGTDEIGVF+M E GL EV NPSALFLT R E VTGATVFPALEGTRPVL+EIQALTVRL
Sbjct:   27 CGEWNSLYEEAGDTVFAARHDLQTGGRALQMVALDSAIALPPRASTGITEFDRALGGGLVTGSATLIGGDPGIGKSTLLLQAAARMAMRGLEVAYISGEEAADQVRLRAQRLGLGSAPVQLASATSVRDILTTLGDGPPPALLVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKQRGTAVVLVGHVTKDGSIAGPRVLEHMVDTVLSFEGERSHQYRILRAIKNRFGGTDEIGVFSMAEEGLAEVTNPSALFLTHRDESVTGATVFPALEGTRPVLIEIQALTVRL 316
[Close]
BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Match: A0A8I0KVK6_9SPHN (DNA repair protein RadA n=1 Tax=Rhizorhabdus sp. TaxID=1968843 RepID=A0A8I0KVK6_9SPHN)

HSP 1 Score: 454 bits (1169), Expect = 4.290e-157
Identity = 236/290 (81.38%), Postives = 262/290 (90.34%), Query Frame = 1 
Query:    1 CGEWNTLVEEAGD-TVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDEFDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEEAADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPDFVVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRVLEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQNPSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL 867
            CGEWNT+VEEA + TVF+AKHNL+TGG+ + +VGLD++I LP+R  TGI EFDRA+GGG+V GSATL+GGDPGIGKSTLLLQ +A++A AG  VAYISGEEAADQVRLRARRLGLG+APV+LASATSVRDILTTL K AP  +VIDSIQTMHSDLIEGAPGTVSQVRASAQELI+FAKE GT ++LVGHVTKDG IAGPRVLEHMVDTV+SFEGERSHQYRILRA+KNRFGGTDEIGVFAM E GL EV NPSALFLT R E V+GATVFPA+EGTRPVLVEIQAL VRL
Sbjct:   27 CGEWNTMVEEASNVTVFSAKHNLRTGGQAIAMVGLDADIPLPKRWSTGIAEFDRAMGGGIVPGSATLIGGDPGIGKSTLLLQAAARMALAGQRVAYISGEEAADQVRLRARRLGLGQAPVQLASATSVRDILTTLEKAAPSLLVIDSIQTMHSDLIEGAPGTVSQVRASAQELIRFAKERGTALVLVGHVTKDGAIAGPRVLEHMVDTVLSFEGERSHQYRILRAVKNRFGGTDEIGVFAMAEGGLDEVANPSALFLTARGEGVSGATVFPAMEGTRPVLVEIQALVVRL 316
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10147.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127MG98_9SPHN7.410e-18493.08DNA repair protein RadA n=12 Tax=Sphingomonadales ... [more]
A0A840HVC3_9SPHN9.710e-16182.41DNA repair protein RadA n=2 Tax=Rhizorhapis TaxID=... [more]
A0A371BJI9_9SPHN4.400e-15982.07DNA repair protein RadA n=2 Tax=Proteobacteria Tax... [more]
A0A258RS76_9SPHN6.240e-15982.76DNA repair protein RadA n=8 Tax=Sphingomonadales T... [more]
UPI001BAF954E6.450e-15982.41DNA repair protein RadA n=2 Tax=Sphingobium phenox... [more]
A0A7W9EF81_9SPHN1.970e-15882.88DNA repair protein RadA n=1 Tax=Sphingobium boecki... [more]
A0A1G6WSS7_9SPHN2.610e-15882.41DNA repair protein RadA n=1 Tax=Sphingomonas sp. Y... [more]
A0A8J7ISJ6_9SPHN1.400e-15782.41DNA repair protein RadA n=2 Tax=Novosphingopyxis T... [more]
A0A2L0AAN5_9SPHN2.130e-15781.38DNA repair protein RadA n=3 Tax=Sphingobium TaxID=... [more]
A0A8I0KVK6_9SPHN4.290e-15781.38DNA repair protein RadA n=1 Tax=Rhizorhabdus sp. T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10147contigD-dudresnayi_contig10147:65..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score457.6
Seed ortholog evalue4.3e-126
Seed eggNOG ortholog392499.Swit_4092
Preferred nameradA
KEGG koko:K04485
GOsGO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
EggNOG OGs1MUJQ@1224,2K1F3@204457,2TS6F@28211,COG1066@1,COG1066@2
COG Functional cat.O
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size870
Cds size870
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.2242334-CDS-D-dudresnayi_contig10147:64..9341622927515.2242334-CDS-D-dudresnayi_contig10147:64..934Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10147 65..934 +
1690556787.826868-CDS-D-dudresnayi_contig10147:64..9341690556787.826868-CDS-D-dudresnayi_contig10147:64..934Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10147 65..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10147.194.1prot_D-dudresnayi_contig10147.194.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10147 65..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10147.194.1

>prot_D-dudresnayi_contig10147.194.1 ID=prot_D-dudresnayi_contig10147.194.1|Name=mRNA_D-dudresnayi_contig10147.194.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=290bp
CGEWNTLVEEAGDTVFAAKHNLQTGGREVRLVGLDSEIKLPERKKTGIDE
FDRAVGGGLVAGSATLMGGDPGIGKSTLLLQVSAKLANAGCSVAYISGEE
AADQVRLRARRLGLGKAPVKLASATSVRDILTTLRKDAPDFVVIDSIQTM
HSDLIEGAPGTVSQVRASAQELIKFAKEHGTMIMLVGHVTKDGNIAGPRV
LEHMVDTVMSFEGERSHQYRILRAIKNRFGGTDEIGVFAMEEMGLCEVQN
PSALFLTDRSEEVTGATVFPALEGTRPVLVEIQALTVRL*
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mRNA from alignment at D-dudresnayi_contig10147:65..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10147.194.1 ID=mRNA_D-dudresnayi_contig10147.194.1|Name=mRNA_D-dudresnayi_contig10147.194.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at D-dudresnayi_contig10147:65..934+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGTGGAGAGTGGAATACGCTGGTTGAGGAAGCAGGTGATACTGTTTTCGC
GGCCAAGCATAATTTGCAGACCGGAGGCAGGGAGGTCCGACTAGTTGGTT
TGGATTCTGAAATAAAGCTGCCGGAGCGTAAGAAGACGGGGATCGACGAA
TTTGATCGTGCCGTTGGAGGTGGTTTAGTGGCCGGCTCTGCAACTCTAAT
GGGCGGTGATCCCGGGATCGGGAAATCGACGCTGTTGCTTCAGGTCTCGG
CCAAATTGGCTAATGCCGGATGTTCCGTCGCTTATATCTCTGGTGAGGAA
GCGGCGGATCAAGTGCGCTTAAGAGCGCGGCGATTGGGACTTGGAAAGGC
TCCGGTTAAATTGGCCTCGGCGACATCGGTCCGCGACATATTGACCACGC
TGCGTAAAGATGCACCTGATTTTGTGGTCATTGATTCTATCCAGACTATG
CATAGCGATCTTATCGAGGGCGCCCCCGGTACAGTCAGCCAAGTGCGGGC
TTCGGCGCAAGAGTTGATCAAATTTGCCAAAGAACATGGCACAATGATCA
TGCTAGTGGGCCATGTGACCAAAGACGGGAATATCGCTGGACCGCGGGTT
TTGGAACATATGGTCGACACGGTCATGAGTTTTGAAGGCGAACGCAGCCA
TCAATATCGGATTTTGCGTGCGATCAAGAACCGTTTTGGCGGTACCGATG
AAATCGGTGTGTTCGCGATGGAAGAAATGGGGCTCTGTGAGGTGCAGAAC
CCTTCAGCGCTGTTCCTGACCGATCGCAGCGAAGAAGTTACTGGCGCGAC
TGTTTTTCCAGCCCTTGAAGGAACAAGGCCAGTTTTAGTTGAAATTCAAG
CACTTACAGTCCGGCTATAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10147:65..934+

>mRNA_D-dudresnayi_contig10147.194.1 ID=mRNA_D-dudresnayi_contig10147.194.1|Name=mRNA_D-dudresnayi_contig10147.194.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at D-dudresnayi_contig10147:65..934+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGTGGAGAGTGGAATACGCTGGTTGAGGAAGCAGGTGATACTGTTTTCGC
GGCCAAGCATAATTTGCAGACCGGAGGCAGGGAGGTCCGACTAGTTGGTT
TGGATTCTGAAATAAAGCTGCCGGAGCGTAAGAAGACGGGGATCGACGAA
TTTGATCGTGCCGTTGGAGGTGGTTTAGTGGCCGGCTCTGCAACTCTAAT
GGGCGGTGATCCCGGGATCGGGAAATCGACGCTGTTGCTTCAGGTCTCGG
CCAAATTGGCTAATGCCGGATGTTCCGTCGCTTATATCTCTGGTGAGGAA
GCGGCGGATCAAGTGCGCTTAAGAGCGCGGCGATTGGGACTTGGAAAGGC
TCCGGTTAAATTGGCCTCGGCGACATCGGTCCGCGACATATTGACCACGC
TGCGTAAAGATGCACCTGATTTTGTGGTCATTGATTCTATCCAGACTATG
CATAGCGATCTTATCGAGGGCGCCCCCGGTACAGTCAGCCAAGTGCGGGC
TTCGGCGCAAGAGTTGATCAAATTTGCCAAAGAACATGGCACAATGATCA
TGCTAGTGGGCCATGTGACCAAAGACGGGAATATCGCTGGACCGCGGGTT
TTGGAACATATGGTCGACACGGTCATGAGTTTTGAAGGCGAACGCAGCCA
TCAATATCGGATTTTGCGTGCGATCAAGAACCGTTTTGGCGGTACCGATG
AAATCGGTGTGTTCGCGATGGAAGAAATGGGGCTCTGTGAGGTGCAGAAC
CCTTCAGCGCTGTTCCTGACCGATCGCAGCGAAGAAGTTACTGGCGCGAC
TGTTTTTCCAGCCCTTGAAGGAACAAGGCCAGTTTTAGTTGAAATTCAAG
CACTTACAGTCCGGCTATAATGTGGAGAGTGGAATACGCTGGTTGAGGAA
GCAGGTGATACTGTTTTCGCGGCCAAGCATAATTTGCAGACCGGAGGCAG
GGAGGTCCGACTAGTTGGTTTGGATTCTGAAATAAAGCTGCCGGAGCGTA
AGAAGACGGGGATCGACGAATTTGATCGTGCCGTTGGAGGTGGTTTAGTG
GCCGGCTCTGCAACTCTAATGGGCGGTGATCCCGGGATCGGGAAATCGAC
GCTGTTGCTTCAGGTCTCGGCCAAATTGGCTAATGCCGGATGTTCCGTCG
CTTATATCTCTGGTGAGGAAGCGGCGGATCAAGTGCGCTTAAGAGCGCGG
CGATTGGGACTTGGAAAGGCTCCGGTTAAATTGGCCTCGGCGACATCGGT
CCGCGACATATTGACCACGCTGCGTAAAGATGCACCTGATTTTGTGGTCA
TTGATTCTATCCAGACTATGCATAGCGATCTTATCGAGGGCGCCCCCGGT
ACAGTCAGCCAAGTGCGGGCTTCGGCGCAAGAGTTGATCAAATTTGCCAA
AGAACATGGCACAATGATCATGCTAGTGGGCCATGTGACCAAAGACGGGA
ATATCGCTGGACCGCGGGTTTTGGAACATATGGTCGACACGGTCATGAGT
TTTGAAGGCGAACGCAGCCATCAATATCGGATTTTGCGTGCGATCAAGAA
CCGTTTTGGCGGTACCGATGAAATCGGTGTGTTCGCGATGGAAGAAATGG
GGCTCTGTGAGGTGCAGAACCCTTCAGCGCTGTTCCTGACCGATCGCAGC
GAAGAAGTTACTGGCGCGACTGTTTTTCCAGCCCTTGAAGGAACAAGGCC
AGTTTTAGTTGAAATTCAAGCACTTACAGTCCGGCTATAA
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